BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G46330.1
Length=2904
Score E
Sequences producing significant alignments: (Bits) Value
Ahg897452 jgi|Araly1|897452|Al_scaffold_0005_1418 4002 0.0
Ahg897453 jgi|Araly1|897453|Al_scaffold_0005_1419 678 0.0
Ahg887748 jgi|Araly1|887748|Al_scaffold_0109_2 178 2e-43
Ahg481819 jgi|Araly1|481819|fgenesh2_kg.4__879__AT2G29010.1 80.5 6e-14
> Ahg897452 jgi|Araly1|897452|Al_scaffold_0005_1418
Length=2640
Score = 4002 bits (2167), Expect = 0.0
Identities = 2494/2651 (94%), Gaps = 25/2651 (1%)
Strand=Plus/Plus
Query 128 ATGAAGAATCTTTGTTGGGTT-TTTCTGTCGCTGTTTTGGTTTGGAGTTTTCCTC-ATCA 185
||||||| |||||||||| || | | ||||| ||||||||||||||||||||| | |||
Sbjct 1 ATGAAGAGTCTTTGTTGGCTTCTGT-TGTCGTTGTTTTGGTTTGGAGTTTTCC-CGATCC 58
Query 186 TTCGTTTTGCTGAAGGACAAAATCAAGAAGGTTTTATCAGTTTAGATTGTGGCTTACCTC 245
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 59 TTCGTTTTGCTGAAGGACAAAATCAAGAAGGTTTTATTAGTTTAGATTGTGGCTTACCTC 118
Query 246 TAAATGAGCCACCTTACATAGAATCGGAAACCGGAATACAGTTCTCATCAGACGAGAATT 305
|||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 119 TAAATGAGCCTCCTTACACAGAATCGGAAACCGGAATACAATTCTCATCAGACGAGAATT 178
Query 306 TCATCCAAAGTGGAAAGACCGGTAGAATCCCGAAAAATCTTGAATCGGAAAATTTAAAAC 365
||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||
Sbjct 179 TCATCCAAAGTGGAAAGACCGGTAGAATCCCTAAAAATCTTGAATCAGATAATTTAAAAC 238
Query 366 AGTATGCAACCCTACGATACTTTCCAGATGGAATACGAAACTGCTATGATCTAAGGGTGG 425
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 239 AGTATGCGACCGTACGATACTTTCCAGATGGAATACGAAACTGCTATGATCTAAGAGTGG 298
Query 426 AAGAAGGGAGGAACTACCTTATTAGAGCTACATTTTTCTATGGAAATTTTGACGGGCTTA 485
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 299 AAGAAGGGAGGAACTATCTTATAAGAGCTACATTTTTCTATGGAAATTTTGACGGGCTTA 358
Query 486 ATGTTAGCCCTGAATTCGATATGCATATCGGTCCTAATAAGTGGACAACAATAGATTTGC 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 ATGTTAGCCCTGAATTCGATATGCATATCGGTCCTAATAAGTGGACAACAATAGATTTGC 418
Query 546 AAATAGTGCCAGATGGTACAGTGAAGGAGATCATTCACATTCCAAGATCAAACTCTTTGC 605
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 419 AAATAGTGCCAGATGGTACAGTGAAGGAGATCATTCACATCCCAAGATCAAACTCTTTGC 478
Query 606 AAATTTGTCTTGTTAAGACAGGGGCAACTATACCAATGATATCAGCTTTGGAATTACGAC 665
|||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 479 AAATTTGTATTGTTAAGACAGGGGCAACTACCCCAATGATATCAGCTTTGGAACTACGAC 538
Query 666 CTTTGGCGAATGATACTTACATCGCTAAATCTGGTTCCTTGAAATATTATTTTCGCATGT 725
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 539 CTTTGGCGAGTGATACTTACATCGCTAAATCTGGTTCCTTGAAATATTACTTTCGCATGT 598
Query 726 ATCTTAGCAATGCCACCGTTCTTCTTCGGTACCCGAAAGATGTTTATGATCGTTCGTGGG 785
|||||| ||||||||||||| ||||||||||||| |||||||||||||||||||| ||||
Sbjct 599 ATCTTAACAATGCCACCGTTATTCTTCGGTACCCAAAAGATGTTTATGATCGTTCATGGG 658
Query 786 TTCCATATAT-TCAACCCGAATGGA-ATCAAATTTCAACAACTTCAAATGTGTCCAATAA 843
|||||||| | ||||| ||||||| | ||||||||||||||| ||||||||||||||||
Sbjct 659 TTCCATAT-TCTCAACAAGAATGGACA-CAAATTTCAACAACTGCAAATGTGTCCAATAA 716
Query 844 AAATCACTATGATCCACCACAAGTTGCTCTTAAGATGGCCGCAACGCCTACAAATCTTGA 903
|||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||
Sbjct 717 AAATCACTATGATCCACCCCAAGCTGCTCTTAAGATGGCCGCAACACCTACAAATCTTGA 776
Query 904 TGCAGCACTGACAATGGTTTGGCGTTTGGAGAATCCTGATGATCAAATCTACTTGTACAT 963
|||| | |||| |||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 777 TGCACCCCTGATGATGGTTTGGCGTTTGGAGAACCCTGATGACCAAATCTACTTGTACAT 836
Query 964 GCACTTCTCGGAGATCCAAGTCCTAAAAGCCAATGACACTAGAGAATTCGACATTATATT 1023
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 837 GCACTTCGCGGAGATCCAAGTCCTAAAAGCCAATGACACTAGAGAATTCGACATTGTATT 896
Query 1024 GAATGGAGAAACAATTAACACTAGAGGTGTTACTCCTAAATATCTTGAAATAATGACCTG 1083
||||||||||| ||||||||||| || |||| |||||||||||||||||||||||| ||
Sbjct 897 GAATGGAGAAAAAATTAACACTATTGGAGTTAGTCCTAAATATCTTGAAATAATGACTTG 956
Query 1084 GCTTACAACAAATCCTAGGCAATGCAACGGAGGTATCTGCCGAATGCAGTTAACAAAAAC 1143
|||||||||||||||||||||||||||| |||||||||||||||| ||||| | ||||||
Sbjct 957 GCTTACAACAAATCCTAGGCAATGCAACAGAGGTATCTGCCGAATTCAGTTGATAAAAAC 1016
Query 1144 CCAAAAATCGACACTTCCACCTCTACTTAATGCTTTTGAAGTTTACTCAGTTCTCCAGCT 1203
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 CCAAAGATCGACACTTCCACCTCTACTTAATGCTTTTGAAGTTTACTCAGTTCTCCAGCT 1076
Query 1204 TCCACAATCTCAGACAAATGAAATTGAAGTGGTTGCTATCAAAAACATTAGAACTACTTA 1263
|| |||||||||||||||||||||||||||||||||||| || ||||| |||||||||||
Sbjct 1077 TCTACAATCTCAGACAAATGAAATTGAAGTGGTTGCTATGAAGAACATCAGAACTACTTA 1136
Query 1264 TGGACTGAGTAGAATCAGTTGGCAAGGAGATCCATGCGTACCGAAACAATTCTTGTGGGA 1323
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 TGGATTGAGTAGAATCAGTTGGCAAGGAGATCCATGCGTACCGAAACAATTCTTGTGGGA 1196
Query 1324 TGGATTGAATTGTAACATCACAGATATATCTGCACCACCAAGAATAATTTCTTTAAATTT 1383
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1197 TGGATTGAATTGTAACATCACAGATATATCTGCACCACCAAGGATAATTTCTTTAAATTT 1256
Query 1384 ATCATCGAGTGGCTTGAGTGGGACTATAGTGTC-TAACTTTCAGAATCTGGCGCATCTAG 1442
||| ||||||||||||||||||||||||||| | | ||||||||||||| | |||||||
Sbjct 1257 ATCTTCGAGTGGCTTGAGTGGGACTATAGTG-CATGACTTTCAGAATCTAACTCATCTAG 1315
Query 1443 AAAGTTTGGATTTGTCAAATAACAGTTTGAGTGGAATAGTGCCCGAGTTTCTAGCCACTA 1502
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||
Sbjct 1316 AAAGTTTGGATTTGTCAAATAACACTTTGAGTGGAACGGTGCCCGAGTTTCTAGCCTCTA 1375
Query 1503 TGAAATCATTGTTGGTCATAAACTTGAGCGGGAATAAACTTAGTGGTGCAATTCCTCAAG 1562
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1376 TGAAATCATTGTTGGTCATAAACTTGAGCGGGAACAAACTTAGTGGTGCAATACCTCAAG 1435
Query 1563 CTCTTCGCGATAGAGAAAGGGAGGGGCTAAAGTTAAATGTTC-TTGGAAACAAAGAGCTT 1621
|||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||
Sbjct 1436 CTCTTCGCGATAGAGAAAGGGAAGGGCTAAAGTTAAATGT-CGTTGGAAACAAAGAGCTT 1494
Query 1622 TGTCTATCTAGTACATGCATAGATAAGCCAAAGAAAAAAGTTGCGGTAAAGGTTGTTGCA 1681
||||| || |||||||||||||||||| |||||||||| || | |||| | ||||||||
Sbjct 1495 TGTCTCTCCGGTACATGCATAGATAAGCAAAAGAAAAAAATTCCAGTAACGATTGTTGCA 1554
Query 1682 CCAGTCGCTTCCATTGCCGCTATCGTTGTTGTG---ATCCTCCTTTTTGTATTCAAAAAG 1738
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1555 CCAGTCACTTCCATTGCCGCTATCGTTGTTGTGTTGATCCTCCTTTTTGTATTCAAAAAG 1614
Query 1739 AAAATGTCATCAAGAAATAAACCTGAACCGTGGATCAAGACCAAAAAGAAAAGGTTTACT 1798
||||| |||||||||||||| | |||||||||||||||||| ||||||||||||||||||
Sbjct 1615 AAAATCTCATCAAGAAATAAGCATGAACCGTGGATCAAGACGAAAAAGAAAAGGTTTACT 1674
Query 1799 TATTCAGAAGTTATGGAAATGACTAAGAACTTGCAAAGACCTCTTGGGGAAGGGGGGTTT 1858
||| |||||||| || ||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1675 TATCCAGAAGTTTTGAAAATGACTAAGAACTTGCAAAGACCTCTTGGTGAAGGAGGGTTT 1734
Query 1859 GGTGTTGTTTATCATGGCGATCTAAATGGCTCAGAGCAAGTAGCTGTCAAACTACTATCC 1918
|| |||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1735 GGCGTTGTTTATCATGGTGATCTAAATGGCTCAGAGCAAGTAGCTGTTAAACTACTTTCC 1794
Query 1919 CAAACATCAGCACAAGGCTATAAAGAATTTAAGGCAGAGGTTGAACTTCTTCTTAGGGTT 1978
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1795 CAAACATCAGCACAAGGCTATAAAGAATTTAAGGCAGAGGTTGAACTTCTTCTAAGGGTT 1854
Query 1979 CACCACATAAATTTGGTCAA-CCTTGTTGGATATTGTGATGAACAAGATCACTTTGCTCT 2037
||||||||||||||||| || |||||||||||| || |||||||||||||||||||||||
Sbjct 1855 CACCACATAAATTTGGT-AAGCCTTGTTGGATACTGCGATGAACAAGATCACTTTGCTCT 1913
Query 2038 CATCTATGAATACATGTCTAATGGAGACTTACATCAACATTTATCAGGAAAACACGGTGG 2097
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1914 CATTTATGAATACATGTCTAATGGAGACTTACATCAGCATTTATCAGGAAAACACGGTGG 1973
Query 2098 CTCTGTTTTAAATTGGGGTACTAGATTGCAAATAGCTATCGAAGCTGCATTAGGATTAGA 2157
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1974 CTCTGTTTTAAATTGGGGTACTAGATTGCAAATAGCTATCGAAACTGCATTAGGATTAGA 2033
Query 2158 ATACTTGCATACTGGATGCAAACCAGCAATGGTGCATAGAGATGTCAAAAGTACAAATAT 2217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2034 ATACTTGCATACTGGATGCAAACCAGCAATGGTGCATAGAGATGTCAAAAGTACAAATAT 2093
Query 2218 ATTGTTGGATGAAGAATTCAAGGCCAAAATTGCGGATTTTGGACTGTCTAGATCGTTTCA 2277
||||||||||||||| ||||| ||||||||||||||||| ||||| ||||||||||||||
Sbjct 2094 ATTGTTGGATGAAGAGTTCAAAGCCAAAATTGCGGATTTCGGACTCTCTAGATCGTTTCA 2153
Query 2278 AGTAGGAGGCGATCAATCTCAAGTTTCAACAGTTGTTGCCGGTACTCTAGGATATCTTGA 2337
||| |||||||||||||||| |||||||||||||||||| |||||| |||||||||||||
Sbjct 2154 AGTTGGAGGCGATCAATCTCGAGTTTCAACAGTTGTTGCTGGTACTTTAGGATATCTTGA 2213
Query 2338 TCCCGAATATTACTTAACAAGTGAGTTATCCGAGAAGAGTGATGTCTACAGTTTCGGGAT 2397
||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||
Sbjct 2214 TCCCGAATATTACTTAACAAGTGAGTTGTCTGAGAAGAGTGATGTCTACAGTTTTGGGAT 2273
Query 2398 CTTGTTACTAGAGATTATCACAAACCAACGAGTGATTGATCAAACCCGTGAAAACCCTAA 2457
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 2274 CTTGTTACTAGAGATTATCACAAACCAACGAGTGATTGAACAAACCCGTGAAAAGCCTAA 2333
Query 2458 CATAGCAGAATGGGTTACATTTGTGATCAAGAAAGGAGATACTAGTCAAATTGTGGATCC 2517
||||||||||||||| |||||| |||| || |||||||| |||||||| || ||||||||
Sbjct 2334 CATAGCAGAATGGGTGACATTTTTGATTAATAAAGGAGACACTAGTCAGATCGTGGATCC 2393
Query 2518 TAAACTTCACGGAAACTATGACACCCACTCTGTCT-GGAGAGCTCTTGAAGTAGCAATGT 2576
||||||||||||||| |||||||| ||||||| || ||||||||||||||||||||||||
Sbjct 2394 TAAACTTCACGGAAATTATGACACTCACTCTG-CTTGGAGAGCTCTTGAAGTAGCAATGT 2452
Query 2577 CATGCGCAAATCCTTCTTCAGTCAAACGACCAAACATGTCTCAAGTAATCATCAATCTTA 2636
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 2453 CATGCGCAAATCCTTCTTCGGCCAAACGACCAAACATGTCTCAAGTAATCATCAATCTTA 2512
Query 2637 AAGAGTGTCTTGCATCTGAAAACACGAGGATAAGTAGGAATAATCAAAACATGGACTCTG 2696
||||||||||||| ||||||||| | ||| |||||||| | |||||||||||||||||
Sbjct 2513 AAGAGTGTCTTGCTTCTGAAAACGCAAGGGCAAGTAGGA-T--TCAAAACATGGACTCTG 2569
Query 2697 GTCATAGCTCGGATCAGCTTAATGTGACTGTGACCTTTGATACTGATG---TGAAGCCTA 2753
||||||||||||||||||||| ||||||||||||||||||||| || | |||||||||
Sbjct 2570 GTCATAGCTCGGATCAGCTTAGTGTGACTGTGACCTTTGATACCGACGACGTGAAGCCTA 2629
Query 2754 AGGCAAGATAG 2764
|||||||||||
Sbjct 2630 AGGCAAGATAG 2640
> Ahg897453 jgi|Araly1|897453|Al_scaffold_0005_1419
Length=2670
Score = 678 bits (367), Expect = 0.0
Identities = 720/888 (81%), Gaps = 34/888 (4%)
Strand=Plus/Plus
Query 1776 AGACCAAAAAG-AAAAGGTTTACTTATTCAGAAGTTATGGAAATGACTAAGAACTTGCAA 1834
||| ||||||| ||||| || | ||| ||||| ||| |||||||||| ||||||||||||
Sbjct 1706 AGA-CAAAAAGAAAAAGATTCAGTTACTCAGAGGTTCTGGAAATGACAAAGAACTTGCAA 1764
Query 1835 AGACCTCTTGGGGAAGGGGGGTTTGGTGTTGTTTATCATGGCGATCTAAAT-GG--C-TC 1890
||||| ||||| ||||| ||||||||||| ||||||||||| ||| | ||| || | ||
Sbjct 1765 AGACCACTTGGTGAAGGAGGGTTTGGTGTCGTTTATCATGGTGATAT-AATGGGTTCATC 1823
Query 1891 AGAGCAAGTAGCTGTCAAACTACTATCCCAAACATCAGCACAAGGCTATAAAGAATTTAA 1950
| | |||||||| || |||||||| |||||| ||||| |||||||||||||||| || ||
Sbjct 1824 ACAACAAGTAGCCGTTAAACTACTTTCCCAATCATCAACACAAGGCTATAAAGAGTTCAA 1883
Query 1951 GGCAGAGGTTGAACTTCTTCTT-AGGGTTCACCACATAAATTTGGTCAA-CCTTGTTGGA 2008
|| ||||| ||||||| | || || |||||||||||||| ||||| || |||||| ||
Sbjct 1884 AGCCGAGGTCGAACTTC-TGTTGAGAGTTCACCACATAAACTTGGT-AAGCCTTGTAGGG 1941
Query 2009 TATTGTGATGAACAAGATCACTTTGCTCTCATCTATGAATACATGTCTAATGGAGACTTA 2068
||||| ||||||| ||||||||| ||||||||||||||||||||||| ||| |||||||
Sbjct 1942 TATTGCGATGAACGAGATCACTTGGCTCTCATCTATGAATACATGTCCAATAAAGACTTA 2001
Query 2069 CATCAACATTTATCAGGAAAACACGGTGGCTCTGTTTTAAATTGGGGTACTAGATTGCAA 2128
| || ||||| |||||||||||||||||||||||||| || ||| |||| || | |||
Sbjct 2002 AAACATCATTTGTCAGGAAAACACGGTGGCTCTGTTTTGAAGTGGAATACTCGACTACAA 2061
Query 2129 ATAGCTATCGAAGCTGCATTAGGATTAGAATACTTGCATACTGGATG-CAAACCAGCAAT 2187
||||| |||| || ||| ||||| | ||||||||||||| |||||| | |||| | ||
Sbjct 2062 ATAGCCGTCGATGCCGCACTAGGACTGGAATACTTGCATATTGGATGTC-GACCATCGAT 2120
Query 2188 GGTGCATAGAGATGTCAAAAGTACAAATATATTGTTGGATGAAG-AATTCAAGGCCAAAA 2246
||||||||||||||||||||||||||||||||||||||| || | |||| | || ||||
Sbjct 2121 GGTGCATAGAGATGTCAAAAGTACAAATATATTGTTGGACGA-GCAATTTACCGCTAAAA 2179
Query 2247 TTGCGGATTTTGGACTGTCTAGATCGTTTC-AAGTAGGAGGCGATCAATCTCAAGTTTCA 2305
|||| ||||| || ||||| ||||| |||| || | |||| || ||||||| ||||||
Sbjct 2180 TTGCTGATTTCGGGCTGTCAAGATC-TTTCCAACTCGGAG---ATGAATCTCAGGTTTCA 2235
Query 2306 ACAGTTGTTGCCGGTACTC-TAGGATATCTTGATCCCGAATATTACTTAACAAGT-GAGT 2363
|| |||||||| || |||| | |||||||||||||||||||||||| |||| || | ||
Sbjct 2236 ACCGTTGTTGCTGGCACTCCT-GGATATCTTGATCCCGAATATTACAGAACAGGTCG-GT 2293
Query 2364 TATCCGAGAA-GAGTGATGTCTACAGTTTCGGGATCT-TGTTACTAGAGATTATCACAAA 2421
| | || || ||| ||||||||||||||||| || | | ||| | ||||| ||||||||
Sbjct 2294 TGGCTGA-AATGAGCGATGTCTACAGTTTCGGAAT-TGTATTATTGGAGATAATCACAAA 2351
Query 2422 CCAACGAGTGATTGATCAAACCCGTGAAAACCCTAACATAGCAGAATGGGTTACATTTGT 2481
|||||| |||||||| | | |||| ||||| || ||||| |||| ||| ||||| |
Sbjct 2352 CCAACGTGTGATTGACCCAGCCCGCGAAAAATCTCACATAACAGACTGGACGGCATTTAT 2411
Query 2482 GATCAAGAAAGGAGATACTAGTCAA-ATTG-TGGATCCTAAACTTCACGGAAACTATGAC 2539
| | || | |||||||| || ||| | | |||||||||| |||||||| | ||| ||
Sbjct 2412 GCTTAATAGAGGAGATATTA--CAAGAATCATGGATCCTAACCTTCACGGTGATTATAAC 2469
Query 2540 ACCCACTCTGTCTGGAGAGCTCTTGAAGTAGCAATG-TCATGCGCAAATCCTTCTTCAGT 2598
| | |||||||||| |||||||||| |||||||| | || || || ||||| ||||
Sbjct 2470 TCTCGTTCTGTCTGGAAAGCTCTTGAATTAGCAATGATG-TGTGCCAACCCTTCATCAGA 2528
Query 2599 CAAACGACCAAACATGTCTCAAGTAATCATCAATCTTAAAGAGTGTCT 2646
|||||||| |||||||| ||||| | ||| | || |||||||||||
Sbjct 2529 AAAACGACCGAACATGTCCCAAGTTGTTATCGAGCTAAAAGAGTGTCT 2576
> Ahg887748 jgi|Araly1|887748|Al_scaffold_0109_2
Length=1071
Score = 178 bits (96), Expect = 2e-43
Identities = 242/312 (78%), Gaps = 12/312 (4%)
Strand=Plus/Plus
Query 1779 CCAAAAAGAAAAGGTTTACTTATTCAGAAGTTATGGAAATGACTAAGAACTTGC-AAAGA 1837
||||||| |||| ||| ||||||| ||||| | || | || | ||||| | |||||
Sbjct 704 CCAAAAATAAAAAGTTCACTTATTTGGAAGTCGTTGAGCTAACGGATAACTT-CAAAAGA 762
Query 1838 CCTCTTGGGGAAGGGGGGTTTGGTGTTGTTTATCATGGCGATCTAAATGGCT-CAGAGCA 1896
|||||| ||||| || ||||| ||||| || || || | | | | | | | || |
Sbjct 763 GTTCTTGGAGAAGGAGGATTTGGAGTTGTCTACCACGGTTCTTTGAGT-GATACCGAACC 821
Query 1897 AGTAGCTGTCAAACTACTATCCCAAACATCAGCACAAGGCTATAAAGAATTTAAGGCAGA 1956
|||||| || ||| | || ||| | |||||| ||||||||||||||||||||||||||
Sbjct 822 AGTAGCGGTTAAAGTTCTTTCCGAGTCATCAGTTCAAGGCTATAAAGAATTTAAGGCAGA 881
Query 1957 GGTTGAACTTCTTCTTAGG-GTTCACCACATAAATTTGGTCAA-CCTTGTTGGATATTGT 2014
||| || ||||| ||| | ||||| |||||||| ||||| || ||||||||| || |||
Sbjct 882 GGTGGAGCTTCTA-TTAAGAGTTCATCACATAAACTTGGT-AAGCCTTGTTGGTTACTGT 939
Query 2015 GATGAACAAGATCACTTTG-CTCTCATCTATGAATACATGTCTAATGGAGAC-TTACATC 2072
|||||| || ||| |||| | ||||||||||| |||||| ||||||||||| ||| | |
Sbjct 940 GATGAAGGAGGTCA-TTTGGCACTCATCTATGAGTACATGGCTAATGGAGACCTTAAA-C 997
Query 2073 AACATTTATCAG 2084
||||||||||||
Sbjct 998 AACATTTATCAG 1009
> Ahg481819 jgi|Araly1|481819|fgenesh2_kg.4__879__AT2G29010.1
Length=3408
Score = 80.5 bits (43), Expect = 6e-14
Identities = 137/183 (75%), Gaps = 4/183 (2%)
Strand=Plus/Plus
Query 1779 CCAAAAAGAAAAGGTTTACTTATTCAGAAGTTATGGAAATGACTAAGAACTTGC-AAAGA 1837
|||||||||||| ||| ||||||| ||||| | || | || | ||||| | |||||
Sbjct 2152 CCAAAAAGAAAAAGTTCACTTATTTGGAAGTCGTTGAGCTAACGGATAACTT-CAAAAGA 2210
Query 1838 CCTCTTGGGGAAGGGGGGTTTGGTGTTGTTTATCATGGCGATCTAAATGGCT-CAGAGCA 1896
|||||| ||||| || ||||| ||||| || || || | | | | | | | || |
Sbjct 2211 GTTCTTGGAGAAGGAGGATTTGGAGTTGTCTACCACGGTTCTTTGAGT-GATACCGAACC 2269
Query 1897 AGTAGCTGTCAAACTACTATCCCAAACATCAGCACAAGGCTATAAAGAATTTAAGGCAGA 1956
|||||| || ||| | || ||| | |||||| ||||||||||||||||||||||||||
Sbjct 2270 AGTAGCGGTTAAAGTTCTTTCCGAGTCATCAGTTCAAGGCTATAAAGAATTTAAGGCAGA 2329
Query 1957 GGT 1959
|||
Sbjct 2330 GGT 2332
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109623725110
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5