BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G46340.1
Length=2670
Score E
Sequences producing significant alignments: (Bits) Value
Ahg897453 jgi|Araly1|897453|Al_scaffold_0005_1419 4000 0.0
Ahg897454 jgi|Araly1|897454|Al_scaffold_0005_1420 1447 0.0
Ahg897452 jgi|Araly1|897452|Al_scaffold_0005_1418 689 0.0
> Ahg897453 jgi|Araly1|897453|Al_scaffold_0005_1419
Length=2670
Score = 4000 bits (2166), Expect = 0.0
Identities = 2512/2680 (94%), Gaps = 20/2680 (1%)
Strand=Plus/Plus
Query 1 ATGGAGTTTCCCCATTCGGTTTTGTTGGTCGTACTAATTATTGCAACTTTCGCTATTTCT 60
|||||| ||||||| |||||||||||||||||| ||||||||||||| |||||||||
Sbjct 1 ATGGAGAGTCCCCATGCGGTTTTGTTGGTCGTAC---TTATTGCAACTTTTGCTATTTCT 57
Query 61 AACCTTGTTCAAGCTGAAGAAGATCAAGAAGGGTTCATCAGTTTGGATTGCGGTTTACCC 120
||||||||||||||| |||| ||| ||||||||||||||||||||||||||||| ||
Sbjct 58 AACCTTGTTCAAGCT---CAAGACCAAAAAGGGTTCATCAGTTTGGATTGCGGTTTAGCC 114
Query 121 CCAAATGAAGTGTCACCATATATCGAGCCGTTTACTGGACTACGGTTTTCATCAGACTCA 180
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 115 CCGAATGAAGTGTCACCATATATCGAGCCGTTTACTGGACTACGATTTTCATCAGACTCA 174
Query 181 AGCTTTATTCAAAGTGGAAAAATCGGTAAAGTTGATAAAAGTTTTGAGGCCACGACTCTA 240
||||| ||||||||||||||||| |||| ||||||||||||||| |||||||| ||||||
Sbjct 175 AGCTTCATTCAAAGTGGAAAAATTGGTAGAGTTGATAAAAGTTTAGAGGCCACTACTCTA 234
Query 241 AAGTCATACATGACGTTGAGATACTTTCCAGATGGAAAACGCAATTGTTACAATCTTATT 300
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 235 AAGTCATACATGACGCTGAGATACTTTCCAGATGGAAAACGCAATTGTTACAATCTAATT 294
Query 301 GTGAAGCAAGGGAAAACTTATATGATTAGAGCTACAGCTCTATATGGAAATTATGACGGT 360
||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 295 GTGAAGCAAGGGACAACTTATTTGATGAGAGCTACAGCTCTATATGGAAATTATGACGGT 354
Query 361 CTTAATATTAGTCCTAAGTTTGATTTATACATTGGCGCTAACTTCTGGACAACACTAGAC 420
||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 355 CTTAATAATAGTCCTAAATTTGATTTATACATTGGCGCTAACTTATGGACAACACTAGAC 414
Query 421 GCGGGAGA-ATATTTATCTGGCGTGGTTGAGGAGGTCAATTACATCCCAAGATCAAATTC 479
| ||| | || |||| |||| |||| | ||||| ||| ||||||| |||||||||||||
Sbjct 415 ACAGGA-ATATCTTTAACTGGTGTGGCTAAGGAGATCATTTACATCACAAGATCAAATTC 473
Query 480 TTTAGACGTGTGTCTTGTTAAAACAGACACGTCGACGCCATTCTTATCACTCTTGGAACT 539
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 474 TTTAGACGTGTGTCTTGTCAAAACAGACACGTCGACGCCATTTTTATCACTCTTGGAACT 533
Query 540 AAGGCCTCTAGATAATGATTCTTACCTCACTGGTTCGGGTTCCTTGAAAACTTTCAGGCG 599
||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||| ||
Sbjct 534 AAGGCCTCTAGATAATGATACTTACCTCACTAGTTCGGGTTCCTTGAAAAAATTCAGCCG 593
Query 600 GTACTATCTTAGTAATTCAGAATCCGTTATCGCGTATCCAGAAGACGTCAAGGACAGAAT 659
|||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 594 GTACTATCTTAGTAATTCAGAATCTATTATCGCGTATCCAGACGACGTCAAGGACAGAAT 653
Query 660 ATGGGAACCAACCTTTGATTCAGAATGGAAGCAGATTTGGACCACTCTCAAACCGAACAA 719
||||||| ||| ||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 654 ATGGGAATCAAGATTTGAGTCAGAATGGAAGCAGATTTCCACCACTCTCAAACCGAACAA 713
Query 720 CTCCA---ATGGTTATCTTGTGCCGAAGAATGTGCTTATGACCGCAGCAATACCTGCAAA 776
||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 714 CTCCATTGGTGGTTATTTTGTGCCGCAGAATGTGCTTATGACCGCAGCAATACCTGCAAA 773
Query 777 TGATAGTGCACCGTTTAGATTTACCGAGGAGCTCGATTCTCCTACTGACGAACTTTACGT 836
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 774 TGATAGTGCACCGTTTAGTTTTACCGAGGAGCTCGATTCTCCTACTGACGAAATTTACGT 833
Query 837 GTACCTCCACTTCTCTGAGGTTCAGTCACTACAGGCCAATGAATCTAGAGAGTTTGACAT 896
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 834 GTACCTCCACTTCTCTGAGGTTCAGTCACTACAAGCCAATGAATCTAGAGAGTTTGACAT 893
Query 897 TTTATGGAGTGGAGAAGTTGCGTACGAAGCTTTTATCCCTGAA-TATCTGAATATCACGA 955
|||||||||||||||||||| ||||||| ||||| |||| || ||||||||||||||||
Sbjct 894 TTTATGGAGTGGAGAAGTTGTTTACGAAGGTTTTAGCCCT-AATTATCTGAATATCACGA 952
Query 956 CAATTCAAACCAATACTCCAGTTACTTGCCCAGGA-GGAAAATGCAACTTAGAGCTAAAA 1014
||||| |||||||||||||| ||||||| | | || |||||||||||||||| ||| | |
Sbjct 953 CAATTAAAACCAATACTCCACTTACTTG-CGAAGATGGAAAATGCAACTTAGGGCTGAGA 1011
Query 1015 AGAACTAAAAACTCTACTCACCCACCTCTTATCAATGCCATCGAGTTTTACACGGTGGTA 1074
||||||||||||||||| | ||||||| || ||||||||||||||||||||||||||||
Sbjct 1012 AGAACTAAAAACTCTACGCTCCCACCTTTTCTCAATGCCATCGAGTTTTACACGGTGGTT 1071
Query 1075 AATTTTCCACAGTTGGAAACAAATGAAACTGATGTTGTTGCTATCAAAGATATCAAAGCA 1134
|| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1072 AAGTTTCCACAGTTGGAAACAAATGGAACTGATGTTGTTGCTATCAAAGATATCAAAGCC 1131
Query 1135 ACCTATGAATTGAATAGAATCACATGGCAAGGAGATCCATGCGTCCCACAAAAGTTTATC 1194
||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 1132 ACCTATGAATTGAATAGAAACACATGGCAAGGAGATCCATGCGTCCCGCAAAAGTTTAGA 1191
Query 1195 TGGGAGGGTCTGGATTGCAACAGCAAAGATGCATTAACACTACCAAGAATCACTTCATTG 1254
||||| ||||||||||| |||||| |||| ||||||| |||||||||||||||||||||
Sbjct 1192 TGGGACGGTCTGGATTGTAACAGCTTAGATACATTAACGCTACCAAGAATCACTTCATTG 1251
Query 1255 AACTTGTCTTCAACCGGCTTAACCGGAAATATTGCAGCTGGAATTCAAAATCTTACCCAC 1314
|||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct 1252 AACTTGTCTTCAACCGGCTTAAAGGGAAACATTGCAGCTGGAATCCAAAATCTTACCCAT 1311
Query 1315 CTTGACAAATTGGATTTGTCAAATAACAATTTGACCGGAGGAGTTCCTGAATTTCTAGCT 1374
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1312 CTTGAAAAATTGGATTTGTCAAATAACAATTTGACCGGAGGAATTCCTGAATTTCTAGCT 1371
Query 1375 AGTATGAAGTCTCTGTCATTCATAAACTTGAGCAAGAACAATCTGAATGGTTCAATCCCA 1434
| |||||||||| | | ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1372 AATATGAAGTCTTTAACGTTCATAAACTTGAGCAATAACAATCTGAATGGTTCAATCCCA 1431
Query 1435 CAAGCTCTTCTTAAAAGAGAAAAGGATGGACTGAAGTTATCTGTTGATGAACAGATTCGG 1494
||||||||||||||||||||||| || |||||||||||||||||||||||| ||| ||||
Sbjct 1432 CAAGCTCTTCTTAAAAGAGAAAAAGAAGGACTGAAGTTATCTGTTGATGAAAAGACTCGG 1491
Query 1495 TGTTTTCCTGGTTCATGTGT---CATCACTAAGAAGAAATTCCCAGTAATGATTGTTGCA 1551
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1492 TGTTTTCCTGGTTCATGTGTCACCACCACTAAGAAGAAATTCCCAGTAATGATTGTTGCA 1551
Query 1552 TTAGTATCTTCGGCTGTGGTGGTCATTCTAGTGGTACTAGTTCTCATTTTTGTATTTAAG 1611
|||||||||||||| |||||||||||| ||||||| ||||||||||||||||| ||||||
Sbjct 1552 TTAGTATCTTCGGCGGTGGTGGTCATTGTAGTGGTTCTAGTTCTCATTTTTGTGTTTAAG 1611
Query 1612 AAGAAAAAGCCATCAAATTTGGAAGATCTACCACCGTCATCAAATACGCCGCGTGAAAAC 1671
|||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 1612 AAGAAAAAACCATCAAATTTGGAAGCTCTACCACCGTCATCAAATACGCCACGTGAAAAT 1671
Query 1672 ATTACATCTACCAGTATATCTGATACATCGATTGAGACAAAAAGAAAAAGATTCAGTTAC 1731
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1672 GTTACATCTACCAGTATTTCTGATACATCGATTGAGACAAAAAGAAAAAGATTCAGTTAC 1731
Query 1732 TCAGAGGTTATGGAAATGACAAAGAACTTGCAAAGACCACTTGGCGAAGGAGGTTTTGGA 1791
||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1732 TCAGAGGTTCTGGAAATGACAAAGAACTTGCAAAGACCACTTGGTGAAGGAGGGTTTGGT 1791
Query 1792 GTCGTTTATCATGGTGATATAAAT-GGTTCATCACAACAAGTAGCCGTTAAACTACTTTC 1850
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 1792 GTCGTTTATCATGGTGATAT-AATGGGTTCATCACAACAAGTAGCCGTTAAACTACTTTC 1850
Query 1851 CCAATCATCAACACAAGGCTATAAAGAGTTTAAAGCTGAGGTCGAACTTTTGTTGAGAGT 1910
|||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||
Sbjct 1851 CCAATCATCAACACAAGGCTATAAAGAGTTCAAAGCCGAGGTCGAACTTCTGTTGAGAGT 1910
Query 1911 TCACCACATAAACTTGGTAAGCCTTGTAGGGTATTGTGATGAACGAGATCACTTGGCTCT 1970
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1911 TCACCACATAAACTTGGTAAGCCTTGTAGGGTATTGCGATGAACGAGATCACTTGGCTCT 1970
Query 1971 CATCTATGAATACATGTCGAATAAAGACTTAAAACATCATTTGTCAGGAAAACACGGTGG 2030
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1971 CATCTATGAATACATGTCCAATAAAGACTTAAAACATCATTTGTCAGGAAAACACGGTGG 2030
Query 2031 CTCTGTTTTAAAGTGGAATACCCGACTACAAATAGCCGTCGATGCCGCACTAGGACTGGA 2090
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2031 CTCTGTTTTGAAGTGGAATACTCGACTACAAATAGCCGTCGATGCCGCACTAGGACTGGA 2090
Query 2091 ATACTTACATATTGGATGTCGACCATCGATGGTGCATAGAGATGTCAAAAGTACAAATAT 2150
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2091 ATACTTGCATATTGGATGTCGACCATCGATGGTGCATAGAGATGTCAAAAGTACAAATAT 2150
Query 2151 ATTGTTGGACGATCAATTTACTGCTAAAATGGCGGATTTCGGGCTGTCAAGATCTTTCCA 2210
|||||||||||| |||||||| |||||||| || ||||||||||||||||||||||||||
Sbjct 2151 ATTGTTGGACGAGCAATTTACCGCTAAAATTGCTGATTTCGGGCTGTCAAGATCTTTCCA 2210
Query 2211 ACTCGGAGATGAATCTCAGGTTTCAACCGTTGTTGCTGGTACTCCTGGATATCTTGACCC 2270
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 2211 ACTCGGAGATGAATCTCAGGTTTCAACCGTTGTTGCTGGCACTCCTGGATATCTTGATCC 2270
Query 2271 CGAATATTACAGAACAGGTCGGTTAGCTGAAATGAGCGATGTCTACAGTTTTGGAATTGT 2330
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 2271 CGAATATTACAGAACAGGTCGGTTGGCTGAAATGAGCGATGTCTACAGTTTCGGAATTGT 2330
Query 2331 GTTATTGGAGATAATAACAAACCAACGTGTGATTGACCCAGCCCGAGAAAAATCTCACAT 2390
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2331 ATTATTGGAGATAATCACAAACCAACGTGTGATTGACCCAGCCCGCGAAAAATCTCACAT 2390
Query 2391 AACAGAATGGACAGCATTTATGCTTAATAGAGGAGATATTACAAGAATCATGGATCCTAA 2450
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2391 AACAGACTGGACGGCATTTATGCTTAATAGAGGAGATATTACAAGAATCATGGATCCTAA 2450
Query 2451 CCTTCAAGGAGATTATAACTCTCGTTCTGTCTGGAGAGCTCTTGAATTAGCAATGATGTG 2510
|||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2451 CCTTCACGGTGATTATAACTCTCGTTCTGTCTGGAAAGCTCTTGAATTAGCAATGATGTG 2510
Query 2511 CGCTAACCCTTCATCAGAAAAACGACCGAGCATGTCCCAAGTTGTTATCGAGCTAAAAGA 2570
|| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2511 TGCCAACCCTTCATCAGAAAAACGACCGAACATGTCCCAAGTTGTTATCGAGCTAAAAGA 2570
Query 2571 GTGTATACGTTCTGAAAATAAAACTCAAGGCATGGATTCTCATAGTTCCTTTGAACAAAG 2630
|||| |||||||||||||||||||| |||| ||||||||||||||||| | |||||||||
Sbjct 2571 GTGTCTACGTTCTGAAAATAAAACTGAAGGGATGGATTCTCATAGTTCATATGAACAAAG 2630
Query 2631 CATGAGTTTTGATACCAAAGCTGTCCCTAGTGCAAGGTAG 2670
||||||||||||||||||||||||||||||||||||||||
Sbjct 2631 CATGAGTTTTGATACCAAAGCTGTCCCTAGTGCAAGGTAG 2670
> Ahg897454 jgi|Araly1|897454|Al_scaffold_0005_1420
Length=2673
Score = 1447 bits (783), Expect = 0.0
Identities = 2123/2740 (77%), Gaps = 211/2740 (8%)
Strand=Plus/Plus
Query 41 TTGCAACTTTCGCTAT--TTCTAACCTTGTTCAAGCTGAAGAAGATCAAGAAGGGTTCAT 98
||| |||||| ||||| ||| || ||||||||||| || ||| |||||||| ||
Sbjct 35 TTGTAACTTTTGCTATAATTC--ACTTTGTTCAAGCT-CAG--GAT---GAAGGGTTTAT 86
Query 99 CAGTTTGGATTGCGGTTTACCCCCAAATGAAGTGTCACCATATATCG-AGCCGTTTACTG 157
||||||||||||||| ||| | || || ||| ||| || |||| || | | | ||||
Sbjct 87 CAGTTTGGATTGCGGGTTATCTCCGAACGAACCGTCTCCTTATACCGAATCTG-CAACTG 145
Query 158 GACTACGGTTTTCATCAGACTCAAGCTTTATTCAAAGTGGAAAAATCGGTAAAG-TTGAT 216
|| ||| || ||||||| |||| |||||| |||| ||||||||| ||| | | || |
Sbjct 146 GATTACAGTACACATCAGATTCAAACTTTATCCAAACTGGAAAAATTGGT-AGGATTCAG 204
Query 217 A-AAAGTTTTGAGGC-CACGACTCTAAAGTCATACATGACGTTGAGATACTTTCCAGATG 274
| ||| | |||| || | || |||||| | | |||||| | |||||||||||||| |
Sbjct 205 AGAAA-TCTTGAAGCAAATTAC-CTAAAGCCCCAGATGACGGTCAGATACTTTCCAGACG 262
Query 275 GAAAACGCAATTGTTACAATCTTATTGTGAAGCAAGGGAA--AACTTATATGATTAGAGC 332
||| |||||| ||||| ||| ||| |||| |||| |||| ||| ||| | || |||||
Sbjct 263 GAATACGCAACTGTTATAATATTACGGTGATGCAA-GGAACCAAC-TATCTAATCAGAGC 320
Query 333 TACAGCTCTATATGGAAATTATGACGGTCTTAATA-TTAGTCCTAAGTTTGATTTATACA 391
|| ||| ||||||| |||||||| ||||||| | ||| |||||||||||| || ||||
Sbjct 321 TAGAGCAATATATGGGAATTATGATAGTCTTAACATTTA-TCCTAAGTTTGACTTGTACA 379
Query 392 TTGGCGCTAACTTCTGGACAACACTAGACGCGGGAGAATAT-TTATCTGG--CGTGGTTG 448
| ||| ||||||||||| ||||| ||||| ||| ||||| | | | || | || |
Sbjct 380 TAGGCCCTAACTTCTGGGCAACAATAGACATTGGAAAATATGTAAAC-GGTACAAGG--G 436
Query 449 AGGAGGTCAATTACATCCC-AAGATCAAA-TTCTTTAGA-CGTGTGTCTTGTTAAAACAG 505
|||| ||||||||||||| || |||||| | |||||| | | ||||||||||| ||||
Sbjct 437 AGGAAATCAATTACATCCCTAA-ATCAAACAT-TTTAGATC-TATGTCTTGTTAAGACAG 493
Query 506 ACACG-T-CGACGCCATTCT-TATC-ACTCTTGGA-ACTAAGGCCTCTAG--ATAATGAT 558
||| | | || ||||| | |||| || ||| || | |||| ||||| | | ||||||
Sbjct 494 --ACGATACTACACCATT-TATATCGAC-CTTCGAGA-TAAGACCTCT-GCCA-AATGAT 546
Query 559 TCTTACCTCACTGGTTCGGGTTCC-TTGAA-A-ACTTTCAGGCGGTACTATCTT-A-GTA 613
|||| |||| || || ||| ||||| | |||| |||||| ||| || | |
Sbjct 547 AGTTACATCACCACATCTGG-TCCGTTGAAGATGTTTTC--GCGGTATTAT-TTAACG-G 601
Query 614 ATTCAGAA-TCCGT-TATCGCGTATCCAGAAGACGTCAAGGACAGAATATGGGAA-CCA- 669
|||||||| | | || | ||| || | || ||| | || ||||||| |||| ||
Sbjct 602 ATTCAGAAGACTATCTA-AG-GTACCCTGTGGATGTCTATGATAGAATAT-GGAATTCAT 658
Query 670 ACCTTTGATTCAGAATGGAAGCAGATTTGGACCACTCTCAAACCGAACAAC-TCCAATGG 728
| | ||| |||| ||||||||||| | || | ||| | | |||| || |||||| |
Sbjct 659 A-CACTGAGACAGACTGGAAGCAGATATCCACTAGTCTTACAGTGAAC-ACTTCCAATAG 716
Query 729 TTAT-CTTGTGCCGAAGAATG-TGCTTATGACCGCAGCAATACCTGCAAATGATAGTGCA 786
|| | | | | || || ||| | || | ||||| |||| ||| | |||| ||||||
Sbjct 717 TT-TCCGTCTTCCTCAGGATGCT-CTCAAAACCGCTGCAACACCGGTGAATGCGAGTGCA 774
Query 787 CCGTT--TAGATTTACCGAGGAGCTC-GATT-CTCCTACTGACGAACTTTACGTGTACCT 842
||||| |||| || |||| | | | |||| || ||| ||| || ||||| | |||||
Sbjct 775 CCGTTGATAGA--TATCGAGTATC-CGGATTCCT-CTAATGATAAAGTTTACATTTACCT 830
Query 843 CCACTTCT-CTGAGGTTC-AGTCACTACAGGCCAATGA-ATCTAGAGAGTTTGACATTTT 899
||||| | ||||||||| |||| || |||||||||| | ||||||||||||| | |||
Sbjct 831 TCACTT-TGCTGAGGTTCAAGTC-TTAAAGGCCAATGAGA-CTAGAGAGTTTGA-AATTT 886
Query 900 ATG-GAGTGGAGAAGTTGCGT-ACGAAGCTTTTATCCCTGAATATCTGAATATCACG--A 955
|| || |||||| | | | |||| | | || ||| ||||||| | |||| | |
Sbjct 887 CTGTGAACGGAGAA-TCCCTTGACGACTCCTATAGGCCTTTATATCTGCA-ATCA-GAAA 943
Query 956 CAATTCAAAC-CAATACTCCAGTTACTTGCCCAGGAGGAA-AATGCAAC-TTAGAGCT-A 1011
| | ||||| | | ||||| ||| ||| | | || || ||||| | ||| |||| |
Sbjct 944 CGGTACAAACTCCGT-CTCCAATTATTTG-CGAAGACAAAGAATGCGTCGTTA-AGCTGA 1000
Query 1012 AAAAGAACTA-AAAACTCTACTCACCCACCTCTTATCAATGCCATCG-A-GTTTTACACG 1068
||| | | | || ||||| ||||||||||| | || ||| ||| | ||||| ||
Sbjct 1001 CAAA-ATC-AGGGAAGTCTACACACCCACCTCTGCTTAACGCCGTCGAAGGTTTT--GCG 1056
Query 1069 GTGGTAAATTTTCCACAGT-TGGAAACAAATGAAACTGATGTTG-TTGCTATCAAAGATA 1126
|| ||| |||||| ||| | | ||| || |||||| ||||| || | ||||| ||| | |
Sbjct 1057 GTTGTAGATTTTCTACAATCT-GAATCAGATGAAAATGATG-TGATCGCTATTAAAAACA 1114
Query 1127 TCAAAGCAACCTATGAATTGAATAGAA-TCACATGGCAAGGAGATCCATGCG-TCCCACA 1184
||| ||| ||||| | |||||| || | |||||||||| |||||||| | ||| |
Sbjct 1115 TCAGAGCCGTCTATGGAGTGAATA-AAGTGTCATGGCAAGGTGATCCATGTGTTCCTA-G 1172
Query 1185 AAAGTTTATCTGGGAGGGTCTGGATTGCAACAGCAAAGATGCA-T-TAACACTACCAAGA 1242
||||| | ||||| ||||| |||| | |||| ||| | | | |||| | |||||
Sbjct 1173 GCAGTTTTTGTGGGATGGTCTAAATTGTAGTAGCACGGAT-AAGTCT-ACACCATCAAGA 1230
Query 1243 ATCACTTCATTGAACTTGTCTTCAACCGGCTTAACCGGAAATATTGCA-GCTGGAATTCA 1301
||||||||||| ||||||||||||| ||| ||||| |||| ||| | | |||||||||||
Sbjct 1231 ATCACTTCATTAAACTTGTCTTCAAGCGGGTTAACGGGAACTATAG-ACGCTGGAATTCA 1289
Query 1302 AAATCTTACCCACCTTGACAAATTGGATTTGTCAAATAACAATTTGACCGGAGGAGTTCC 1361
|||||| || ||||| || |||||||| ||||||||||| | |||||| |||| | | ||
Sbjct 1290 AAATCTAACACACCTAGAAAAATTGGACTTGTCAAATAATAGTTTGACTGGAGCAATCCC 1349
Query 1362 TGAATTTCTAGCTAGTATGAAGTC-TCTG-TCATTCATAAACTTGAGCAAGAACAATCTG 1419
||||||||||||| ||||| || | || | | ||||||| ||||||||||||||| ||
Sbjct 1350 CGAATTTCTAGCTAACATGAAATCAT-TGTTGA-TCATAAATTTGAGCAAGAACAATTTG 1407
Query 1420 AATGGTTCAATCCCACAAGCTCTTCTTAAAAGAGAAAAGGATGGACTGAAGTT-ATCTGT 1478
|||| |||||| |||||||||||||| || ||||||||||| |||||||| || || |||
Sbjct 1408 AATGATTCAATTCCACAAGCTCTTCTCAATAGAGAAAAGGAAGGACTGAAATTAAT-TGT 1466
Query 1479 TGATGAACA---GAT---TCGGTGTTTTCCTGGTTCATGTGTCATCACTAAGAAGAAATT 1532
||||| ||| ||| || ||| | ||||||||||||| | | | || ||||| ||
Sbjct 1467 TGATGGACATGGGATAAATCAATGTCTGCCTGGTTCATGTG-C--CCCAAAAAAGAATTT 1523
Query 1533 CCCAGTAATGATTGTTGCATTAGTAT-CTTCGGCTGTGGTGGTCAT--TC-TAGTGGT-A 1587
||||| |||||||||||| | || | || | || |||| ||| || || ||||||| |
Sbjct 1524 TCCAGTGATGATTGTTGCACTGGT-TGCTACAGCGGTGGCGGTAATAATCGTAGTGGTGA 1582
Query 1588 CTAG-TTCTCATTTTTGTATTTAAG-AAGAAAAAGCCATCAA---ATTTGGAAGAT-CTA 1641
| | ||||| ||| ||| ||||| ||||||||| |||||| || |||||| | ||
Sbjct 1583 -T-GATTCTCGTTTGTGT-GTTAAGAAAGAAAAAGACATCAAGTCATGTGGAAGCTAATA 1639
Query 1642 CCACCGTCA-TCAAATACGCCGCGTGAAAACATT-ACATCTAC-C-AGTATATCTGATAC 1697
|| || ||| | || ||||||||| | ||| || ||| | || | ||||| || || ||
Sbjct 1640 CC-CCTTCAGT-AATTACGCCGCGGGCGAAC-TTCACA-C-ACACTAGTATGTCAGAGAC 1694
Query 1698 ATCGATTGAGACAAAAAGAAA-AAGATTCAGTTACT-CAGAGGTTATGGAAATGACAAAG 1755
||| || ||||| |||||||| ||| || ||| | | |||||||||| ||||||||||
Sbjct 1695 ATCAATCGAGAC-AAAAGAAAGAAGGTTTAGTCA-TACAGAGGTTATACAAATGACAAAC 1752
Query 1756 AACTTGC-AAAGACCACTTGGCGAAGGAGGTTTTGG-AGTCGTTTATCATGG-TGATATA 1812
|| || | ||||| | || ||||||||||| ||||| | ||||||||||||| | |||||
Sbjct 1753 AAGTT-CGAAAGAGCTCTAGGCGAAGGAGGGTTTGGTA-TCGTTTATCATGGAT-ATATA 1809
Query 1813 AATGGTTCATCACAACAAGTAGCCGTTAAACTACTTTCCCAATCATCAACACAAGGCTAT 1872
|| || | ||||| |||||||| |||||| ||||||| |||||||| ||||||| |||
Sbjct 1810 AACGG-T--TCACAGCAAGTAGCTGTTAAAGTACTTTCTGAATCATCATCACAAGGTTAT 1866
Query 1873 AAAGAGTTTAAAGCTGAGGTCGAACTT-TTGTTGAGAGTTCACCACATAAACTTGGTAAG 1931
|||||||| ||||| ||||| |||||| || || ||||||||||||||||| |||||||
Sbjct 1867 AAAGAGTTCAAAGCAGAGGTTGAACTTCTT-TTAAGAGTTCACCACATAAATTTGGTAAA 1925
Query 1932 CCTTGTAGGGTATTGTGATGAACGAGATCACTTGGCTCTCATCTATGAATACATGTCGAA 1991
|||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||| ||
Sbjct 1926 CCTTGTTGGGTATTGTGATGAACGAGGTCACTTGGCTCTCATCTACGAATACATGTCCAA 1985
Query 1992 TAAAGACTTAAAACATCATTTGTCAGGAAAACACGGTGGCTCTGTTTTAAAGTGGAATAC 2051
| |||||||||| | |||||||||||||||| ||||||| | ||| || |||| |||
Sbjct 1986 TGGAGACTTAAAAGAACATTTGTCAGGAAAACGCGGTGGC-C--CTTTGAATTGGAGTAC 2042
Query 2052 CCGACTACAAATAGCCGTC-GATGCCGCACTAGGACTGGAATACTTACATATTGGATGTC 2110
||| ||| |||||| | | ||||| ||||||||| |||| |||||||||| ||| || |
Sbjct 2043 TCGATTACGAATAGCTG-CTGATGCTGCACTAGGATTGGAGTACTTACATACTGGGTGCC 2101
Query 2111 GACCATCGATGGTGCATAGAGATGTCAAAAGTACAAATATATTGTT-GGACGATCAATT- 2168
|||||| |||||||| |||||||||||| |||| || |||||||| ||| || || ||
Sbjct 2102 AACCATCAATGGTGCACAGAGATGTCAAATGTACGAACATATTGTTGGGA-GAGCAGTTC 2160
Query 2169 TAC-TGCTAAAATGGCGGATTTCGGGCTGTCAAGATCTTTCCAACTCGGAGATGAATCTC 2227
| | || ||||| || ||||| || || ||||||||||||||||||||||||||||| |
Sbjct 2161 T-CAGGC-AAAATTGCAGATTTTGGTCTTTCAAGATCTTTCCAACTCGGAGATGAATCCC 2218
Query 2228 AGGTTTCAACCGTTGTTGCTGGTACTCCTGGATATCTTGACCCCGAATATTACAGAACAG 2287
| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 2219 ATGTTTCAACCGTTGTTGCGGGTACTCCTGGATATCTTGACCCTGAATATTACAGAACAG 2278
Query 2288 GTCGGTTAGCTGAAA-TGAGCGATGTCTACAGTTTTGGAATTGTGTTATTGGAGATAATA 2346
||||||| || |||| | || ||||| || |||||||| ||||| || ||||| || ||
Sbjct 2279 GTCGGTTGGCGGAAACT-AGTGATGTATATAGTTTTGGGATTGTATTGTTGGAAATGATC 2337
Query 2347 ACAAACCAACGTGTGATTGACCCAGCCCGAGAAAAA-TCTCACATAACAGAATGGACAGC 2405
|||||||||||||||||||| | | |||| ||||| || ||||||||||||||||| ||
Sbjct 2338 ACAAACCAACGTGTGATTGATCAAACCCGC-AAAAAGTCCCACATAACAGAATGGACGGC 2396
Query 2406 ATTTATGCTTAATAGAGGAGATATTACAAGAATCATGGATCCTAACCTTCAAGGAGATTA 2465
||||||||||||||||||||||||||| || ||||||||||||||||| || || |||||
Sbjct 2397 ATTTATGCTTAATAGAGGAGATATTACTAGGATCATGGATCCTAACCTCCACGGTGATTA 2456
Query 2466 TAACTCTCGTTCTGTCTGGAGAGCTCTTGAATTAGCAATGATGTGCGCTAACCCTTCATC 2525
|||||||||||||| ||||||||||||||||| || ||| ||||||| |||||||| ||
Sbjct 2457 CAACTCTCGTTCTGTTTGGAGAGCTCTTGAATTGGCTATGTTGTGCGCAAACCCTTCTTC 2516
Query 2526 AGAAAA-ACGACCGAGCATGTCCCAAGTTGTTATCGAGCTAAAAGAGTGTAT-ACGTTCT 2583
|||||| | |||| ||||||||||||||||||||||| || ||||||||| | || ||||
Sbjct 2517 AGAAAATA-GACCAAGCATGTCCCAAGTTGTTATCGAACTGAAAGAGTGTCTTAC-TTCT 2574
Query 2584 GAAAA-T--A--AAAC-T------CAAGGCATGGATTCTCATAGTTCCTTTGAACAA-AG 2630
||||| | | ||| | |||| || || |||||||||||||||||| | ||
Sbjct 2575 GAAAAATCGATGAAAGGTAAGAATCAAGACACAGACTCTCATAGTTCCTTTGAA-ATGAG 2633
Query 2631 CATGAGTTTTGATACCAAAGCTGTCCCTAGTGCAAGGTAG 2670
|||||| ||||| | |||||||| |||||||||||||||
Sbjct 2634 CATGAGCTTTGACGCAAAAGCTGTGCCTAGTGCAAGGTAG 2673
> Ahg897452 jgi|Araly1|897452|Al_scaffold_0005_1418
Length=2640
Score = 689 bits (373), Expect = 0.0
Identities = 733/903 (81%), Gaps = 40/903 (4%)
Strand=Plus/Plus
Query 1706 AGAC-AAAAAGAAAAAGATTCAGTTACT-CAGAGGTTATGGAAATGACAAAGAACTTGCA 1763
|||| |||||| ||||| || | ||| | |||| ||| || ||||||| |||||||||||
Sbjct 1652 AGACGAAAAAG-AAAAGGTTTACTTA-TCCAGAAGTTTTGAAAATGACTAAGAACTTGCA 1709
Query 1764 AAGACCACTTGGCGAAGGAGGTTTTGGAGTCGTTTATCATGGTGATATAAATGGTTCATC 1823
|||||| ||||| |||||||| ||||| || ||||||||||||||| ||||||| | ||
Sbjct 1710 AAGACCTCTTGGTGAAGGAGGGTTTGGCGTTGTTTATCATGGTGATCTAAATGG--C-TC 1766
Query 1824 ACAACAAGTAGCCGTTAAACTACTTTCCCAATCATCAACACAAGGCTATAAAGAGTTTAA 1883
| | |||||||| |||||||||||||||||| ||||| |||||||||||||||| |||||
Sbjct 1767 AGAGCAAGTAGCTGTTAAACTACTTTCCCAAACATCAGCACAAGGCTATAAAGAATTTAA 1826
Query 1884 AGCTGAGGTCGAACTT-TTGTTGAGAGTTCACCACATAAACTTGGTAAGCCTTGTAGGGT 1942
|| ||||| |||||| || | || |||||||||||||| |||||||||||||| || |
Sbjct 1827 GGCAGAGGTTGAACTTCTT-CTAAGGGTTCACCACATAAATTTGGTAAGCCTTGTTGGAT 1885
Query 1943 ATTGTGATGAACGAGATCACTTGGCTCTCATCTATGAATACATGTCGAATAAAGACTTAA 2002
| || ||||||| ||||||||| |||||||| |||||||||||||| ||| |||||||
Sbjct 1886 ACTGCGATGAACAAGATCACTTTGCTCTCATTTATGAATACATGTCTAATGGAGACTTAC 1945
Query 2003 AACATCATTTGTCAGGAAAACACGGTGGCTCTGTTTTAAAGTGGAATACCCGACTACAAA 2062
| || ||||| ||||||||||||||||||||||||||||| ||| ||| || | ||||
Sbjct 1946 ATCAGCATTTATCAGGAAAACACGGTGGCTCTGTTTTAAATTGGGGTACTAGATTGCAAA 2005
Query 2063 TAGCCGTCGATGCCGCACTAGGACTGGAATACTTACATATTGGATGTC-GACCATCGATG 2121
|||| |||| | ||| ||||| | |||||||| |||| |||||| | |||| | |||
Sbjct 2006 TAGCTATCGAAACTGCATTAGGATTAGAATACTTGCATACTGGATG-CAAACCAGCAATG 2064
Query 2122 GTGCATAGAGATGTCAAAAGTACAAATATATTGTTGGACGATCAATTTACTGCTAAAATG 2181
|||||||||||||||||||||||||||||||||||||| || | || | || |||||
Sbjct 2065 GTGCATAGAGATGTCAAAAGTACAAATATATTGTTGGATGAAGAGTTCAAAGCCAAAATT 2124
Query 2182 GCGGATTTCGGGCTGTCAAGATC-TTTCCAACTCGGAG---ATGAATCTC-AGGTTTCAA 2236
||||||||||| || || ||||| |||| || | |||| || |||||| || ||||||
Sbjct 2125 GCGGATTTCGGACTCTCTAGATCGTTTC-AAGTTGGAGGCGATCAATCTCGAG-TTTCAA 2182
Query 2237 CCGTTGTTGCTGGTACTCCT-GGATATCTTGACCCCGAATATTACAGAACAGGTCG-GTT 2294
| ||||||||||||||| | ||||||||||| |||||||||||| |||| || | |||
Sbjct 2183 CAGTTGTTGCTGGTACTT-TAGGATATCTTGATCCCGAATATTACTTAACAAGT-GAGTT 2240
Query 2295 AG-CTGA-AATGAGCGATGTCTACAGTTTTGGAAT-TGTGTTATTGGAGATAATAACAAA 2351
| |||| || ||| ||||||||||||||||| || | ||||| | ||||| || |||||
Sbjct 2241 -GTCTGAGAA-GAGTGATGTCTACAGTTTTGGGATCT-TGTTACTAGAGATTATCACAAA 2297
Query 2352 CCAACGTGTGATTGACCCAGCCCGAGAAAAATCTCACATAACAGAATGGAC-AGCATTTA 2410
|||||| |||||||| | | |||| ||||| || ||||| |||||||| | |||||
Sbjct 2298 CCAACGAGTGATTGAACAAACCCGTGAAAAGCCTAACATAGCAGAATGGGTGA-CATTTT 2356
Query 2411 TGCTTAATAGAGGAGATATTA--CAAGAATCATGGATCCTAACCTTCAAGGAGATTATAA 2468
|| |||||| |||||| | || || || || |||||||||| ||||| ||| ||||| |
Sbjct 2357 TGATTAATAAAGGAGACACTAGTCA-GA-TCGTGGATCCTAAACTTCACGGAAATTATGA 2414
Query 2469 CTCTCGTTCTGTCT-GGAGAGCTCTTGAATTAGCAATGATG-TGCGCTAACCCTTCATCA 2526
| ||| |||| || |||||||||||||| |||||||| | ||||| || ||||| ||
Sbjct 2415 CACTCACTCTG-CTTGGAGAGCTCTTGAAGTAGCAATG-TCATGCGCAAATCCTTCTTCG 2472
Query 2527 GAAAAACGACCGAGCATGTCCCAAGTTGTTATCGAGCTAAAAGAGTGTATA-CGTTCTGA 2585
| |||||||| | |||||| ||||| | ||| | || ||||||||| | | ||||||
Sbjct 2473 GCCAAACGACCAAACATGTCTCAAGTAATCATCAATCTTAAAGAGTGTCTTGC-TTCTGA 2531
Query 2586 AAA 2588
|||
Sbjct 2532 AAA 2534
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100710607780
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5