BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G46440.1
Length=1424
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485016 jgi|Araly1|485016|fgenesh2_kg.5__1008__AT3G46440.1 1930 0.0
Ahg496056 jgi|Araly1|496056|fgenesh2_kg.8__1872__AT5G59290.1 1258 0.0
> Ahg485016 jgi|Araly1|485016|fgenesh2_kg.5__1008__AT3G46440.1
Length=1319
Score = 1930 bits (1045), Expect = 0.0
Identities = 1266/1363 (93%), Gaps = 53/1363 (4%)
Strand=Plus/Plus
Query 8 TTTTCCAGATAATATATTCAAAATTTTACAGA-GAGGAAGAAGAAGTTCCCGACACTTGT 66
|||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||
Sbjct 1 TTTTCCAGATAATATATTCAAAATTTTACAGAGGAAGAAGAAGAAGTT-CCGACACTTGT 59
Query 67 GAGAGACTATAAAAGTATACGATCTCCTCCTCTCGCTCTCTTCAGATCACAAAGTTTTCG 126
|||||||||| | | | | ||||||||||||||||||||||||||||
Sbjct 60 GAGAGACTAT-----T-T---A--------T-TCGCTCTCTTCAGATCACAAAGTTTTCG 101
Query 127 TTTTTAGGGTTCTCTCATCGATCTCGGT-TTGTGATCTTCT-TCT-TCATCAATGGCGTC 183
||||||||||||||||||||||||| || || | || ||| ||| ||||||||||||||
Sbjct 102 TTTTTAGGGTTCTCTCATCGATCTC-GTATTCT--TCCTCTCTCTCTCATCAATGGCGTC 158
Query 184 TAGTGATAAACAAACAAGCCCAAAGCCTCCTCCTTCACCGTCTCCTCTCCGTAATTCCAA 243
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 159 AAGTGATAAACAAACAAGCCCAAAGCCTCCTCCTTCTCCTTCTCCTCTCCGTAATTCCAA 218
Query 244 GTTTTGTCAGTCAAATATGAGGATTTTGATCTCAGGAGGAGCTGGATTCATTGGTTCTCA 303
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 219 GTTTTGTCAGTCAAATATGAGGATCTTGATCTCAGGAGGAGCTGGATTCATTGGCTCTCA 278
Query 304 CCTTGTTGATAAGCTGATGGAAAACGAAAAGAATGAGGTGATTGTTGCTGATAACTATTT 363
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 279 CCTTGTTGATAAGTTGATGGAAAACGAAAAGAATGAGGTGATTGTTGCTGATAACTATTT 338
Query 364 CACTGGTTCAAAGGACAACCTTAAGAAGTGGATTGGTCATCCAAGATTTGAGCTTATCCG 423
||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 339 CACCGGTTCAAAGGACAACCTTAAGAAGTGGATCGGTCATCCGAGATTTGAGCTTATCCG 398
Query 424 TCACGATGTCACGGAGCCACTTTTGATCGAGGTTGATCAGATTTACCATCTTGCATGTCC 483
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 399 TCACGATGTCACGGAGCCACTTTTGATCGAGGTTGATCAGATTTACCATCTCGCATGTCC 458
Query 484 TGCTTCTCCTATCTTCTACAAGTACAACCCTGTGAAGACAATCAAGACCAATGTGATTGG 543
||||||||| || ||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 459 TGCTTCTCCCATTTTCTACAAGTATAACCCTGTGAAGACAATCAAGACAAATGTGATTGG 518
Query 544 CACACTGAACATGCTAGGTCTCGCCAAGCGTGTTGGAGCAAGGATTTTGCTTACCTCAAC 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 CACACTGAACATGCTAGGTCTCGCCAAGCGTGTTGGAGCAAGGATTTTGCTTACCTCAAC 578
Query 604 CTCGGAGGTATATGGAGATCCTCTCATTCATCCCCAGCCTGAGAGCTATTGGGGAAATGT 663
|||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 579 CTCGGAAGTGTATGGAGATCCTCTCATCCATCCCCAGCCTGAGAGCTATTGGGGAAATGT 638
Query 664 CAACCCAATTGGTGTTAGGAGCTGTTATGATGAAGGCAAGCGTGTTGCTGAGACCTTGAT 723
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 639 CAACCCAATTGGTGTTAGGAGCTGTTATGATGAAGGCAAGCGTGTAGCTGAGACCTTGAT 698
Query 724 GTTTGACTACCACAGGCAACATGGAATTGAAATCCGCATTGCTAGAATCTTCAACACTTA 783
|||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 699 GTTTGACTACCATAGGCAGCATGGAATTGAAATCCGCATTGCCAGAATCTTCAACACTTA 758
Query 784 TGGTCCACGCATGAACATCGATGATGGCCGTGTTGTAAGCAACTTCATTGCACAAGCACT 843
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 759 TGGTCCACGCATGAACATTGATGATGGCCGTGTTGTAAGCAACTTCATTGCACAAGCACT 818
Query 844 CCGGGGTGAGGCATTGACTGTTCAGAAACCAGGGACACAGACTCGCAGTTTCTGTTATGT 903
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 819 CCGTGGTGAGGCATTGACTGTTCAGAAACCAGGGACACAGACACGCAGTTTCTGTTATGT 878
Query 904 ATCTGACATGGTTGATGGACTTATGCGCCTCATGGAAGGAGATGACACTGGTCCCATCAA 963
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 879 ATCTGACATGGTTGATGGACTTATGCGCCTCATGGAAGGAGATGACACTGGTCCCATCAA 938
Query 964 CATCGGTAACCCAGGTGAGTTTACAATGGTGGAG-TTGGCTGAGACAGTGAAAGAGCTGA 1022
|||||||||||||||||||||||| |||||||| ||| ||||||||||||| |||||||
Sbjct 939 CATCGGTAACCCAGGTGAGTTTACCATGGTGGAACTTG-CTGAGACAGTGAAGGAGCTGA 997
Query 1023 TTAACCCGAGCATAGAGATAAAGATGGTTGAGAACACACCGGATGATCCAAGACAGAGGA 1082
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 998 TTAACCCGAGCATAGAGATAAAGATGGTTGAGAACACACCGGATGATCCAAGACAGAGGA 1057
Query 1083 AGCCAGACATCACAAAGGCTAAAGAAGTGTTGGGATGGGAACCAAAGGTGAAGCTTCGTG 1142
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1058 AGCCGGACATCACAAAGGCTAAAGAAGTGTTGGGATGGGAACCAAAGGTGAAGCTTCGTG 1117
Query 1143 AAGGCCTTCCACTTATGGAAGAAGACTTCAGGCTAAGGCTCGGAGTCCACAAGAACTAAA 1202
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1118 AAGGCCTTCCCCTTATGGAAGAAGACTTCAGGCTAAGGCTCGGAGTCCCCAAGAACTAAA 1177
Query 1203 ACTCCATCACCGATCACACGCAAACGTGAATGCACTACATAACCAAGTTCTACTTTTCAT 1262
|||| ||| || | ||| | | | | || | || |||||||||||||
Sbjct 1178 ACTCTGTCA--GA--AT--GCA--C-T-A-T-CAGT-CA-------GTTCTACTTTTCAA 1217
Query 1263 A-TTCCATGGTGCAAGCGGTTGGTTTCATATAATATGTTTCT-A--CTTTCCACAGTCGA 1318
| ||||||||||||| ||||||||||||||||||||||||| | ||||||||||| |
Sbjct 1218 AATTCCATGGTGCAATTGGTTGGTTTCATATAATATGTTTCTCATACTTTCCACAGTT-A 1276
Query 1319 AATTATTCCTAGAGAAAAATAAAGATTATGAACGAATGCTTTT 1361
||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1277 TATTGTCCCTAGAGAAAAATAAAGATTATGAACGAATGCTTTT 1319
> Ahg496056 jgi|Araly1|496056|fgenesh2_kg.8__1872__AT5G59290.1
Length=1378
Score = 1258 bits (681), Expect = 0.0
Identities = 926/1043 (89%), Gaps = 21/1043 (2%)
Strand=Plus/Plus
Query 174 CAATGGC-G-T-CTAGTGATAAACA-AACAAGCCCAAAGCCTCCTCCTTCACCGTCTCCT 229
||||||| | | | ||||| ||||| ||| ||| |||||||||||||||| || ||||||
Sbjct 129 CAATGGCAGCTACAAGTGAGAAACAGAAC-AGCACAAAGCCTCCTCCTTCTCCTTCTCCT 187
Query 230 CTCCGTAATTCCAAGTTTTGTCAGTCAAATATGAGGATTTTGATCTCAGGAGGAGCTGGA 289
||||| |||||||||||||||||||| ||||||||||| |||||||| |||||||||||
Sbjct 188 CTCCGCAATTCCAAGTTTTGTCAGTCCAATATGAGGATCTTGATCTCTGGAGGAGCTGGG 247
Query 290 TTCATTGGTTCTCACCTT-GTTGATAAGCTGATGGAAAACGAAAAGAATGAGGTGATTGT 348
|||||||||||||| ||| ||||||||||| |||||||| || |||||||||||||||||
Sbjct 248 TTCATTGGTTCTCA-CTTGGTTGATAAGCTTATGGAAAATGAGAAGAATGAGGTGATTGT 306
Query 349 TGCTGATAACTATTTCACTGGTTCAAAGGACAACCTTAAGAAGTGGATTGGTCATCCAAG 408
||||||||||||||||||||| ||||| || ||||| ||||||||||| ||||| || ||
Sbjct 307 TGCTGATAACTATTTCACTGGATCAAAAGAAAACCTCAAGAAGTGGATCGGTCACCCGAG 366
Query 409 ATTTGAGCTTATCCGTCACGATGTCACGGAGCCACTT-TTGATCGAGGTTGATCAGATTT 467
||||||||||| ||||||||||| |||||||| || |||||||||||||||| |||||
Sbjct 367 GTTTGAGCTTATTCGTCACGATGTTACGGAGCC-TTTGTTGATCGAGGTTGATCGGATTT 425
Query 468 ACCATCTTGCATGTCCTGCTTCTCCTATCTTCTACAAGTACAACCCTGTGAAGACAATCA 527
|||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 426 ACCATCTTGCTTGTCCTGCCTCTCCTATCTTCTACAAGTACAACCCTGTTAAGACAATCA 485
Query 528 AGACCAATGTGATTGGCACACTGAACATGCTAGGTCTCGCCAAGCGTGTTGGAGCAAGGA 587
||||||||||||| || ||||| |||||||||||||| |||||||||||||||||||| |
Sbjct 486 AGACCAATGTGATCGGTACACTCAACATGCTAGGTCTTGCCAAGCGTGTTGGAGCAAGAA 545
Query 588 TTTTGCTTACCTCAACCTCGGAGGTATATGGAGATCCTCTCATTCATCCC-CAGCCTGAG 646
|||| || |||||||||||||| || ||||||||||||||||| || ||| || || |||
Sbjct 546 TTTTACTAACCTCAACCTCGGAAGTGTATGGAGATCCTCTCATCCA-CCCTCAACCAGAG 604
Query 647 AGCTATTGGGGAAATGTCAACCCAATTGGTGTTA-GGAGCTGTTATGATGAAGGCAAGCG 705
||||| ||||||||||||||||||||||||| || |||| || ||||| |||||||||||
Sbjct 605 AGCTACTGGGGAAATGTCAACCCAATTGGTG-TACGGAGTTGCTATGACGAAGGCAAGCG 663
Query 706 TGTTGCTGAGACCTTGATGTTTGACTACCACAGGCAACATGGAATTGAAATCCGCATTGC 765
||| || |||||||||||||||||||||||||| ||||| || |||||||||||||||||
Sbjct 664 TGTAGCCGAGACCTTGATGTTTGACTACCACAGACAACACGGCATTGAAATCCGCATTGC 723
Query 766 TAGAATCTTCAACACTTATGGTCCACGCATGAACATCGATGATGGCCGTGTTGTAAGCAA 825
|||||||||||||||||||||||| || |||||||| |||||||| ||||| || |||||
Sbjct 724 TAGAATCTTCAACACTTATGGTCCTCGAATGAACATTGATGATGGGCGTGTGGTGAGCAA 783
Query 826 CTTCATTGCACAAGCACTCCGGGGTGAGGCATTGACTGTTCAGAAACCAGGGACACAGAC 885
||||||||| ||||||||| | |||||||||||||| ||||||||||| |||||||||||
Sbjct 784 CTTCATTGCTCAAGCACTCAGAGGTGAGGCATTGACAGTTCAGAAACCGGGGACACAGAC 843
Query 886 TCGCAGTTTCTGTTATGTATCTGACATGGTTGATGGACTTATGCGCCTCATGGAAGGAGA 945
||||||||||||||||| || |||||||| ||||||||||| || || |||||||| ||
Sbjct 844 CCGCAGTTTCTGTTATGTCTCCGACATGGTGGATGGACTTATCCGTCTTATGGAAGGGGA 903
Query 946 TGACACTGGTCCC-ATCAACATCGGTAACCCAGGTGAGTTTACAATGGTGGAG-TTGGCT 1003
||| ||||| ||| ||||||||||||||||||||||| || ||||||||||| ||| ||
Sbjct 904 TGATACTGG-CCCTATCAACATCGGTAACCCAGGTGAATTCACAATGGTGGAACTTG-CT 961
Query 1004 GAGACAGTGAAAGAGCTGATTAACCCGAGCATAGAGATAAAGATGGTTGAGAACACACCG 1063
||||| || || ||||| |||||||| |||||||||||||||||||| ||||||||||||
Sbjct 962 GAGACGGTTAAGGAGCTTATTAACCCAAGCATAGAGATAAAGATGGTGGAGAACACACCG 1021
Query 1064 GATGATCCAAGACAGAGGAAGCCAGACATCACAAAGGCTAAAGAAGTGTTGGGATGGGAA 1123
|| ||||||||||||||||| |||||||| | ||||| |||||||||||||| |||||
Sbjct 1022 GACGATCCAAGACAGAGGAAACCAGACATTAGTAAGGCCAAAGAAGTGTTGGGTTGGGAG 1081
Query 1124 CCAAAGGTGAAGCTTC-GTGAAGGCCTTCCACTTATGGAAGAAGACTTCAGGCTAAGGCT 1182
|||||||||||||| | | ||||| ||||| || ||||||||||| ||| | ||||||||
Sbjct 1082 CCAAAGGTGAAGCT-CAGAGAAGGACTTCCTCTCATGGAAGAAGATTTCCGACTAAGGCT 1140
Query 1183 CGGA-GTCCACAAGAACTAAAAC 1204
| | |||| ||| |||||||||
Sbjct 1141 CA-ACGTCCCCAAAAACTAAAAC 1162
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53250162510
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5