BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G46450.2
Length=2085
Score E
Sequences producing significant alignments: (Bits) Value
Ahg897457 jgi|Araly1|897457|Al_scaffold_0005_1423 2217 0.0
> Ahg897457 jgi|Araly1|897457|Al_scaffold_0005_1423
Length=1485
Score = 2217 bits (1200), Expect = 0.0
Identities = 1396/1491 (94%), Gaps = 12/1491 (1%)
Strand=Plus/Plus
Query 242 ATGGGGGATAATTCTGGTAGAAGTAGAAACTCTATGATGGCAACTGTTTCTTCTGGGAAA 301
||||| || ||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 ATGGGAGACAATTCCGGTAGAAGTAGAAACTCTGTGATGGCAACTGTTTCTTCTGGGAAA 60
Query 302 GAGTTGTTACCTAAAAGAAGCTTAGTAGCTGCTATTCCAAGAGCTGTTCAGCAGACAATC 361
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 61 GAGTTGTTACCTAAGAGAAGCTTAGTAGCTGCTATTCCAAGAGCGGTTCAGCAGACAATA 120
Query 362 TCTAAGCATGTTTCTTTTGGGAGTAATGGTAGATTTGGAAGTGGAACCGCTCGTAATGCA 421
| |||||||||||| || |||| |||||||||| |||| |||||||||| ||||||||||
Sbjct 121 TATAAGCATGTTTCATTGGGGAATAATGGTAGAATTGGTAGTGGAACCGTTCGTAATGCA 180
Query 422 GCTGTGTTTCTGCTTAAAATCGCTGTTTTAGAAGTTGTTCGAAGGGTTTCAAAGGCTAAA 481
|| ||||||||||| |||||||| ||||| |||||||||||||||||||| ||||||| |
Sbjct 181 GCGGTGTTTCTGCTGAAAATCGCGGTTTTGGAAGTTGTTCGAAGGGTTTCGAAGGCTAGA 240
Query 482 TGTCCTCATTTGTGGAATAGTCTTCAGGCGTTGCAATGTCTTTGTTATCCTCCTCTTAAG 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TGTCCTCATTTGTGGAATAGTCTTCAGGCGTTGCAATGTCTTTGTTATCCTCCTCTTAAG 300
Query 542 TGGATTCAAAGATGGGCTCCTTTCAAGGAGTTGATCAATGCAATGCAG------TTATTG 595
|||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 301 TGGATTCAGAGATGGGCTCCTTTCAAGGAGTTGATCAAGGCAATGCAGTCTCAATTATTG 360
Query 596 TGTGTGATCGTTATGCAGATGTTGTCTCGGCCATTGTTGGTCATCACGATAGCTGAGGCT 655
||||||||||||||||||||| ||||||||||||| |||||| |||| ||||||||||||
Sbjct 361 TGTGTGATCGTTATGCAGATGCTGTCTCGGCCATTATTGGTCCTCACCATAGCTGAGGCT 420
Query 656 CTGACAGACCAGTCAGAGTTAAAGCAAGAAGCCTCAGGTGGTACCAATTCTCATGCATCT 715
|| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 421 CTCACAGACCAGTCAGAGTTAAAGCAAGAAGCCTCAGGTGGTACCACTTCTCATACATC- 479
Query 716 TCAGAATCAGAATCACAATCTGACTCGCAGACTTTACAGTCTCCATCAGATATAAGAATT 775
| ||||||||||||||| || | ||||| | |||||||||||||||||||||||||
Sbjct 480 T-----TCAGAATCACAATCTTACCCACAGACGTCACAGTCTCCATCAGATATAAGAATT 534
Query 776 GAAGATGAGGCTCCACTTCCTGTAATTTCACAAGACTGGCTTAGAAAACTCTATGAAGAA 835
|||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||
Sbjct 535 GAAGATGAGGCTCCACTTTCTGTAACTTCACAAGACTGGCTTAGGCAACTCTATGAAGAA 594
Query 836 CTGGAAAAGCAGAGACTTAGCTTACCAGAGAGACTCAATGAAGACGAGCTTCATAGATTC 895
||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||
Sbjct 595 CTGGAAAAGCAGAGACTTAGCTTGCCTGAGAGACTCAACGAAGACGAGCTTCATAGATTC 654
Query 896 TACAGGGTGTCAAATGGAGACTTCACATCCTTACTATCTTCGATAAAAAAGACAATTCAT 955
|| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 655 TATAGAGTGTCAAATGGAGACTTCACATCCTTACTATCTTCAATAAAAAAGACAATTCAT 714
Query 956 TGGAGGGAGACTTACAGAATTCTTTCTGAAGAAGAACTTGAGACATGGTCAAGTTTACTC 1015
|||||||||||||||||||| || |||||||| |||||||||||||||||||||||| ||
Sbjct 715 TGGAGGGAGACTTACAGAATCCTATCTGAAGAGGAACTTGAGACATGGTCAAGTTTAGTC 774
Query 1016 TTTTGGCATGGATATGATAAGAACCAACGACCTTGCCTCATTGTTCGTTTGGGGCTAGCT 1075
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||
Sbjct 775 TTTTGGCATGGATATGACAAGAACCAACGACCTTGCCTCATTGTTCGCTTGGGGCTTGCT 834
Query 1076 TTTCTAAAGTTGCCATCTCATGAGAGACCTCGTTTCGCTCAGGCAATCATATCTCAGGTA 1135
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 835 TTTCTAAAGTTGCCATCTCATGAAAGACCTCGTTTCGCTCAAGCAATCATATCTCAGGTA 894
Query 1136 GAGCACGGCGTTTTGCATCTTCTGACCCCTGAGAATTCAGAACTTACAGTGTTAGTCGAT 1195
||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||
Sbjct 895 GAGCACGGCGTTTTGCATCTTTTGACCCCTGAGAATTCAGAACTTACTGTTTTAGTCGAT 954
Query 1196 TGTGAAGGATTATCTCCTCTGAGGATTCCCATGCAGATGATGAGATCTTGTTCTTCCATT 1255
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 955 TGTGAAGGATTATCTCCTCTGAGGATTCCCATGCAGATGATGAGATCTTGTTCATCCATT 1014
Query 1256 CTTCAAGATCACTTCCCTAACCGTCTTGGCTGCCTATTCATCATTCGCCTCCCTCCTGTT 1315
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 1015 CTTCAAGATCACTTCCCTAACCGTCTTGGCTGCCTATTTATCATTCGCCTCCCTCCTTTT 1074
Query 1316 GTCCGTGTCATTTCCCAGACTTTCATCCAAATTCTTAGACCAACCACACGCAAGAAGCTG 1375
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 GTTCGAGTCATTTCCCAGACTTTCATCCAAATTCTTAGACCAACCACACGCAAGAAGCTG 1134
Query 1376 AGAATTGAAGGGGAAACTTTCCATCGAGTCCTCTCTGAATACCTCCAGACACTTCCTTCA 1435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 AGAATTGAAGGGGAAACTTTCCATCGAGTCCTCTCTGAATACCTCCAGACACTTCCTTCA 1194
Query 1436 TACCTTGGTAGCAACTGCAACTGCAAAAGATGCTCAAATCTCAACGAACAAGATCCACCA 1495
|||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1195 TACCTTGGCAGCAACTGCAACTGCAAAAGATGCTCAAATCTCAGCGAACAAGATCCACAA 1254
Query 1496 CAGCCACAAACACACCCAAGAAGAAAGAGAAGAAGCTCGAGTGAAACAGAGAAGCTAGAC 1555
|| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 1255 CAACCACAAACACACCCAAGAAGCAAGAGAAGAAGCTTGAGTGAAACAGAGAAGCTAGAC 1314
Query 1556 GACAGCCACTGGAGTTACAATGCCCAGACACCTGATTTATCCTATGAAGACGAGCCGAGC 1615
|| ||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||
Sbjct 1315 GATAGCCACTGGAGTTACAATGTCCAGACTCCTGATTTAGCCTATGAAGACGAGCCGAGC 1374
Query 1616 CTGAACATATGCAGCCAAGTTCTGCGAACAGCAGTCGTGTTCTTACTCATGATATGGCTC 1675
||||||||||| |||||||| || || ||||| || |||||||| ||| ||| |||||||
Sbjct 1375 CTGAACATATGTAGCCAAGTGCTACGGACAGCGGTAGTGTTCTTGCTCGTGACATGGCTC 1434
Query 1676 TTCGGTGCACTACTAGCTGGATTTGCTGATCCTGAGAGCAGACCCTTTTAA 1726
|| || ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1435 TTTGGGGCACTACTAGCTGGATTCGCTGATCCTGAGAGCAGACCCTTTTAA 1485
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78427814455
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5