BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G46460.1
Length=880
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485019 jgi|Araly1|485019|fgenesh2_kg.5__1011__AT3G46460.1 1245 0.0
Ahg950672 jgi|Araly1|950672|scaffold_802559.1 595 2e-169
> Ahg485019 jgi|Araly1|485019|fgenesh2_kg.5__1011__AT3G46460.1
Length=781
Score = 1245 bits (674), Expect = 0.0
Identities = 746/781 (96%), Gaps = 4/781 (1%)
Strand=Plus/Plus
Query 77 tcttcatcttcctcttctctcAGATCACTGGAAGCTCTAGCTCGATTTCTCA-CAATCCG 135
||||| ||||||||||||||||||||||| |||||||||||||||||||||| | ||||
Sbjct 1 TCTTCCTCTTCCTCTTCTCTCAGATCACTTGAAGCTCTAGCTCGATTTCTCATC-ATCCA 59
Query 136 CCATGAACTCACAAGCTTGTCTTCTTCTTCAGAAACAGCTTAAAGATCTTTGTAAGCATC 195
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 60 CCATGAACTCACAAGCTTGTCTTCTTCTTCAGAAACAGCTTAAAGATCTATGTAAGCATC 119
Query 196 CTGTAGATGGATTCTCTGCTGGTTTAGTTGATGAGAAGAATATATTCGAATGGAGCGTAA 255
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 120 CTGTAGATGGATTCTCTGCTGGTTTAGTTGATGAGAAGAATATATTCGAATGGAGCGTTA 179
Query 256 CTATTATTGGACCTCCTGATACTCTCTATGAAGGAGGATTTTTCTATGCCATTATGTCAT 315
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 180 CCATTATTGGACCTCCTGATACTCTCTATGAAGGAGGATTTTTCTATGCCATTATGTCTT 239
Query 316 TCCCACAAAACTATCCTAATAGCCCACCTACGGTGCGGTTTACTTCAGATATTTGGCATC 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TCCCACAAAACTATCCTAATAGCCCACCTACGGTGCGGTTTACTTCAGATATTTGGCATC 299
Query 376 CTAACGTTTATCCCGATGGCCGCGTTTGTATATCTATTCTACATCCTCCTGGTGATGATC 435
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 300 CTAACGTTTATCCCGATGGTCGTGTTTGTATATCTATTCTACATCCTCCTGGTGATGATC 359
Query 436 CAAGTGGATATGAGCTTGCAAGTGAGCGTTGGACGCCTGTTCACACAGTTGAGAGTATCA 495
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CAAGCGGATATGAGCTTGCAAGTGAGCGTTGGACGCCTGTTCACACAGTTGAGAGTATCA 419
Query 496 TGTTGAGTATTATATCAATGCTCTCTGGTCCCAACGACGAATCTCCAGCAAACGTTGAGG 555
|||||||||| ||||| |||||||||||||||||||| |||||||| || |||||||| |
Sbjct 420 TGTTGAGTATCATATCGATGCTCTCTGGTCCCAACGATGAATCTCCTGCGAACGTTGAAG 479
Query 556 CTGCTAAAGAATGgagagagaagagagaTGAGTTCAAGAAGAAAGTGAGCCGTTGTGTCA 615
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
Sbjct 480 CTGCTAAAGAATGGAGAGAGAAGAGAGACGAGTTTAAGAAGAAAGTGAGCCGTTGTGTGA 539
Query 616 GAAAGTCTCAAGAAATGTTTTGATCAAAGAAACACTTTCACACTCCAACACCATCTTCTA 675
|||||||||||||||||||||||||| | ||||||||||||||| |||| ||| ||||||
Sbjct 540 GAAAGTCTCAAGAAATGTTTTGATCATACAAACACTTTCACACTTCAACTCCACCTTCTA 599
Query 676 TGGAGTTCAAAAGCTCATTTATCTTATCGaaaaaaaTTCCCTTTGAAAAA-CTGTCCAAA 734
|||||||||||||||||||||||||||||| |||||| |||||| ||||| |||||||||
Sbjct 600 TGGAGTTCAAAAGCTCATTTATCTTATCGACAAAAAT-CCCTTTTAAAAAACTGTCCAAA 658
Query 735 CACTACTTGTAATAAACCCGTCTTGCATCTTTTAATCGCGTTCCTCAACGTGAAATGAAG 794
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 659 CACTACTTGTAATAAACCCGTCTTGCATCTTTTAATCGCGTTCTTGAACGTGAAATGAAG 718
Query 795 TGTTTGGTCGaaaaaaaTGTTGTTCTTGaaaaaaaCTGACATTAAAAGTTATACTATTCT 854
|||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||
Sbjct 719 TGTTTGGTCGAAAAAAATCTTGTTCTTGCAAAAAACTGACATTAAAATTTATACTATTCT 778
Query 855 T 855
|
Sbjct 779 T 779
> Ahg950672 jgi|Araly1|950672|scaffold_802559.1
Length=542
Score = 595 bits (322), Expect = 2e-169
Identities = 439/497 (88%), Gaps = 2/497 (0%)
Strand=Plus/Plus
Query 147 CAAGCTTGTCTTCTTCTTCAGAAACAGCTTAAAGATCTTTGTAAGCATCCTGTAGATGGA 206
|||||| | ||||| ||||||||||| ||||||||||| |||||||||||||| ||||||
Sbjct 30 CAAGCTAGCCTTCTCCTTCAGAAACAACTTAAAGATCTCTGTAAGCATCCTGTTGATGGA 89
Query 207 TTCTCTGCTGGTTTAGTTGATGAGAAGAATATATTCGAATGGAGCGTAACTATTATTGGA 266
|||||||||||| | |||||||| ||||||||||||||||||||||| || ||||| |||
Sbjct 90 TTCTCTGCTGGTCTCGTTGATGATAAGAATATATTCGAATGGAGCGTTACCATTATCGGA 149
Query 267 CCTCCTGATACTCTCTATGAAGGAGGATTTTTCTAT-GCCATTATGTCATTCCCACAAAA 325
||||||||||||||||||||||||||||| || || || |||||| |||| || |||||
Sbjct 150 CCTCCTGATACTCTCTATGAAGGAGGATTCTT-TAACGCTATTATGACATTTCCGCAAAA 208
Query 326 CTATCCTAATAGCCCACCTACGGTGCGGTTTACTTCAGATATTTGGCATCCTAACGTTTA 385
|||||| |||||||| || || ||| |||||||||| ||||| |||||||||||||||||
Sbjct 209 CTATCCGAATAGCCCGCCAACCGTGAGGTTTACTTCGGATATGTGGCATCCTAACGTTTA 268
Query 386 TCCCGATGGCCGCGTTTGTATATCTATTCTACATCCTCCTGGTGATGATCCAAGTGGATA 445
| | ||||| || ||||| ||||||||||| |||||||| ||||||||||| || || ||
Sbjct 269 TTCTGATGGTCGTGTTTGCATATCTATTCTTCATCCTCCCGGTGATGATCCTAGCGGTTA 328
Query 446 TGAGCTTGCAAGTGAGCGTTGGACGCCTGTTCACACAGTTGAGAGTATCATGTTGAGTAT 505
|||||||||||| ||||| ||||| |||||||| || ||||| ||||| |||||||||||
Sbjct 329 TGAGCTTGCAAGCGAGCGCTGGACTCCTGTTCATACTGTTGAAAGTATTATGTTGAGTAT 388
Query 506 TATATCAATGCTCTCTGGTCCCAACGACGAATCTCCAGCAAACGTTGAGGCTGCTAAAGA 565
||||| ||||| ||||||||||| || || ||||||||||| ||||| ||||| |||||
Sbjct 389 CATATCGATGCTTTCTGGTCCCAATGATGAGTCTCCAGCAAATGTTGAAGCTGCCAAAGA 448
Query 566 ATGgagagagaagagagaTGAGTTCAAGAAGAAAGTGAGCCGTTGTGTCAGAAAGTCTCA 625
|||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 449 ATGGCGAGAGAAGAGAGACGAGTTCAAGAAGAAAGTGAGCCGCTGTGTCAGAAAGTCTCA 508
Query 626 AGAAATGTTTTGATCAA 642
||||||||| ||| |||
Sbjct 509 AGAAATGTTGTGAACAA 525
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32595094035
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5