BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G46490.1
Length=993
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485020 jgi|Araly1|485020|fgenesh2_kg.5__1012__AT3G46490.1 1592 0.0
Ahg359346 jgi|Araly1|359346|fgenesh1_pg.C_scaffold_132000003 1153 0.0
Ahg485021 jgi|Araly1|485021|fgenesh2_kg.5__1013__AT3G46500.1 798 0.0
Ahg473661 jgi|Araly1|473661|fgenesh2_kg.1__3615__AT1G35190.1 728 0.0
Ahg937350 jgi|Araly1|937350|scaffold_501541.1 451 4e-126
> Ahg485020 jgi|Araly1|485020|fgenesh2_kg.5__1012__AT3G46490.1
Length=996
Score = 1592 bits (862), Expect = 0.0
Identities = 953/997 (96%), Gaps = 5/997 (1%)
Strand=Plus/Plus
Query 1 ATGGAGAATAAAACTGAGGAAG---AGGTATCAATCATCAAAGTTTCTTCCCTTACTTGC 57
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1 ATGGAGAATAAAACTGAGGAAGATAAGGTATCAATCATCAAAGTTTCTGCCCTTACTTGC 60
Query 58 ATCGATCTCGACAACTCTGATCTTCATCAATCAGCTGTTTTACTCAAGCAGGCATGTCTC 117
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATAGATCTCGACAACTCCAATCTTCATCAATCAGCTGTTTTACTCAAGCAGGCATGTCTC 120
Query 118 GATAGTGGATTTTTCTATGTCATAAATCATGGTATAAGTGAGGAACTCAAGGATGAGGCT 177
||||||||||||||||||||||| |||||||||||||| |||||||| ||||| ||||||
Sbjct 121 GATAGTGGATTTTTCTATGTCATTAATCATGGTATAAGCGAGGAACTGAAGGACGAGGCT 180
Query 178 TTCGAGCACAGCAAGAAGTTCTTCGCTCTTCCTTTGGAAGAGAAGATGAAAGTCTTGAGA 237
|| || || ||||||||||| || |||||||||||||| ||||| |||||||||||||||
Sbjct 181 TTTGAACAGAGCAAGAAGTTTTTTGCTCTTCCTTTGGAGGAGAAAATGAAAGTCTTGAGA 240
Query 238 AACGAAAAGTATCGAGGCTATGCACCATTCCATGATTCTCTCTTAGACCCTGAAAACCAA 297
|| |||||||||||||||||||||||||| || |||||||||||||||||| ||||||||
Sbjct 241 AATGAAAAGTATCGAGGCTATGCACCATTTCACGATTCTCTCTTAGACCCTAAAAACCAA 300
Query 298 GTCCGAGGGGACTACAAAGAGGGTTTTACCATTGGGTTCGAAGGTAGCAAAGATGGTCCC 357
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 301 TTCCGAGGGGACTACAAAGAGGGTTTTACCATTGGGTTCGAAGGTGGCAAAGATGGTCCC 360
Query 358 CATTGGGATAAACCATTCCATAGCCCCAATATTTGGCCTAACCCTGACGTTTTGCCCGGA 417
||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 361 CATGGGGATAAACCATTCCATAGCCCCAACATTTGGCCTAACTCTGACGTTTTGCCCGGA 420
Query 418 TGGCGGGAGACCATGGAGAAATATTATCAAGAAGCATTGAGGGTTTGTAAGTCTATTGCG 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TGGCGGGAGACCATGGAGAAATATTATCAAGAAGCATTGAGGGTTTGTAAGTCTATTGCG 480
Query 478 AAAATAATGGCTTTGGCGCTCGACTTGGATGTGGATTACTTT-AATACACCAGAGATGCT 536
| |||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||
Sbjct 481 AGAATAATGGCTTTGGCGCTCGACTTGGATGTGGATTA-TTTCAATACACCGGAGATGCT 539
Query 537 GGGAAATCCAATTGCAGATATGGTCTTGTTTCACTATGAAGGGAAGTCTGATCCCTCGAA 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GGGAAATCCAATTGCAGATATGGTCTTGTTTCACTATGAAGGGAAGTCTGATCCCTCGAA 599
Query 597 AGGAATATATGCATGTGGAGCACATTCTGATTTCGGAATGATGTCTCTCTTAGCAACTGA 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 AGGAATATATGCATGTGGAGCACATTCTGATTTCGGAATGATGTCTCTCTTAGCAACTGA 659
Query 657 TGGTGTCATGGGACTTCAGATATGCAAGGATAAAGACGTGAAGCCTCAAAAGTGGGAATA 716
|||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 660 TGGTGTAATGGGACTTCAGATTTGCAAGGATAAAGACGTGATGCCTCAAAAGTGGGAATA 719
Query 717 TACTCCATCGATTAAAGGAGCCTATATTGTGAATCTTGGTGATCTGCTTGAGCGTTGGAG 776
|| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 720 TATTCCATCAATTAAAGGAGCCTATATTGTGAATCTTGGTGATCTGCTGGAGCGTTGGAG 779
Query 777 TAATGGCTATTTCAAATCTACATTGCATCGGGTACTCGGGAATGGGCAGGACCGATATTC 836
||||||||||||||| || ||||| ||||||||||| ||||||||||| |||||||||||
Sbjct 780 TAATGGCTATTTCAAGTCGACATTACATCGGGTACTTGGGAATGGGCAAGACCGATATTC 839
Query 837 TATTCCATTCTTCCTGAAACCGAGTCATGACTGTATAATAGAGTGTCTTCCTACCTGCCA 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TATTCCATTCTTCCTGAAACCGAGTCATGACTGTATAATAGAGTGTCTTCCTACCTGCCA 899
Query 897 GTCTGAAAACAACCTTCCCAAATATCCAGCGATCAAATGTTCAACGTACATCTCCCAACG 956
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GTCCGAAAACAACCTTCCCAAATATCCAGCGATCAAATGTTCAACGTACATCTCCCAACG 959
Query 957 TTACAAAGCAGTACATGCACACCTAAAACAGACCTAG 993
||||||||||| |||||||||||||||||||||||||
Sbjct 960 TTACAAAGCAGCACATGCACACCTAAAACAGACCTAG 996
> Ahg359346 jgi|Araly1|359346|fgenesh1_pg.C_scaffold_132000003
Length=789
Score = 1153 bits (624), Expect = 0.0
Identities = 702/739 (95%), Gaps = 7/739 (1%)
Strand=Plus/Plus
Query 1 ATGGAGAATAAAACTGAGGAAG---AGGTATCAATCATCAAAGTTTCTTCCCTTACTTGC 57
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1 ATGGAGAATAAAACTGAGGAAGATAAGGTATCAATCATCAAAGTTTCTGCCCTTACTTGC 60
Query 58 ATCGATCTCGACAACTCTGATCTTCATCAATCAGCTGTTTTACTCAAGCAGGCATGTCTC 117
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATAGATCTCGACAACTCCAATCTTCATCAATCAGCTGTTTTACTCAAGCAGGCATGTCTC 120
Query 118 GATAGTGGATTTTTCTATGTCATAAATCATGGTATAAGTGAGGAACTCAAGGATGAGGCT 177
||||||||||||||||||||||| |||||||||||||| |||||||| ||||| ||||||
Sbjct 121 GATAGTGGATTTTTCTATGTCATTAATCATGGTATAAGCGAGGAACTGAAGGACGAGGCT 180
Query 178 TTCGAGCACAGCAAGAAGTTCTTCGCTCTTCCTTTGGAAGAGAAGATGAAAGTCTTGAGA 237
|| || || ||||||||||| || |||||||||||||| ||||| |||||||||||||||
Sbjct 181 TTTGAACAGAGCAAGAAGTTTTTTGCTCTTCCTTTGGAGGAGAAAATGAAAGTCTTGAGA 240
Query 238 AACGAAAAGTATCGAGGCTATGCACCATTCCATGATTCTCTCTTAGACCCTGAAAACCAA 297
|| |||||||||||||||||||||||||| || |||||||||||||||||| ||||||||
Sbjct 241 AATGAAAAGTATCGAGGCTATGCACCATTTCACGATTCTCTCTTAGACCCTAAAAACCAA 300
Query 298 GTCCGAGGGGACTACAAAGAGGGTTTTACCATTGGGTTCGAAGGTAGCAAAGATGGTCCC 357
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 301 TTCCGAGGGGACTACAAAGAGGGTTTTACCATTGGGTTCGAAGGTGGCAAAGATGGTCCC 360
Query 358 CATTGGGATAAACCATTCCATAGCCCCAATATTTGGCCTAACCCTGACGTTTTGCCCGGA 417
||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 361 CATGGGGATAAACCATTCCATAGCCCCAACATTTGGCCTAACTCTGACGTTTTGCCCGGA 420
Query 418 TGGCGGGAGACCATGGAGAAATATTATCAAGAAGCATTGAGGGTTTGTAAGTCTATTGCG 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TGGCGGGAGACCATGGAGAAATATTATCAAGAAGCATTGAGGGTTTGTAAGTCTATTGCG 480
Query 478 AAAATAATGGCTTTGGCGCTCGACTTGGATGTGGATTACTTT-AATACACCAGAGATGCT 536
| |||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||
Sbjct 481 AGAATAATGGCTTTGGCGCTCGACTTGGATGTGGATTA-TTTCAATACACCGGAGATGCT 539
Query 537 GGGAAATCCAATTGCAGATATGGTCTTGTTTCACTATGAAGGGAAGTCTGATCCCTCGAA 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GGGAAATCCAATTGCAGATATGGTCTTGTTTCACTATGAAGGGAAGTCTGATCCCTCGAA 599
Query 597 AGGAATATATGCATGTGGAGCACATTCTGATTTCGGAATGATGTCTCTCTTAGCAACTGA 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 AGGAATATATGCATGTGGAGCACATTCTGATTTCGGAATGATGTCTCTCTTAGCAACTGA 659
Query 657 TGGTGTCATGGGACTTCAGATATGCAAGGATAAAGACGTGAAGCCTCAAAAGTGGGAATA 716
|||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 660 TGGTGTAATGGGACTTCAGATTTGCAAGGATAAAGACGTGATGCCTCAAAAGTGGGAATA 719
Query 717 TACTCCATCGA-TTAAAGG 734
|| |||||| | |||||||
Sbjct 720 TATTCCATC-ACTTAAAGG 737
> Ahg485021 jgi|Araly1|485021|fgenesh2_kg.5__1013__AT3G46500.1
Length=1199
Score = 798 bits (432), Expect = 0.0
Identities = 726/863 (84%), Gaps = 39/863 (5%)
Strand=Plus/Plus
Query 107 AGGCATGTCTCGATAGTGGATTTTTCTATGTCATAAATCATGGTATAAGTGAGGAACTCA 166
|||||||||| ||| |||||||||||||||||| |||||||||||| |||||||| | |
Sbjct 198 AGGCATGTCTAGATTGTGGATTTTTCTATGTCACAAATCATGGTATTAGTGAGGAGTTAA 257
Query 167 AGGATGAGGCTTTCGAGCACAGCAAGAAGTTCTTCGCTCTTCCTTTGGAAGAGAAGATGA 226
|||| |||||||||||||| |||||||||||||| |||||||||||||| ||||| ||||
Sbjct 258 AGGACGAGGCTTTCGAGCAAAGCAAGAAGTTCTTTGCTCTTCCTTTGGACGAGAAAATGA 317
Query 227 AAGTCTTGAGAAACGAAAAGTATCGAGGCTATGCACCATTCCATGATTCTCTCTTAGA-C 285
||||||||| ||| |||||| ||| ||||||| |||| ||| || || | | |
Sbjct 318 AAGTCTTGAAAAATGAAAAGCATCAAGGCTATTCACCCGTCC----TT-AGTC--AAATC 370
Query 286 CCTGAAAACCAAGTCCGA-GGGGACTACAAAGAGGGTTTTACCATTGGGTTCGAAGGTAG 344
|||| |||||| ||| | ||||| |||||||| ||||| |||| | ||| |
Sbjct 371 TCTGATAACCAAATCC-ATGGGGATTACAAAGAAAGTTTTTTCATT--G---GAA--T-- 420
Query 345 CAAAGATGGTCCCCATTGGGATAAACCATTCCATAGCCCCAATATTTGGCCTAACCCTGA 404
| || | | | ||| |||| ||||||| | || | || |||||||||||||||||
Sbjct 421 CGAA-A--G-CTCCA--ACGATACACCATTCTGTCGCGCTAACATTTGGCCTAACCCTGA 474
Query 405 CGTTTTGCCCGGATGGCGGGAGACCATGGAGAAATATTATCAAGAAGCATTGAGGGTTTG 464
|||||||| ||||||| || ||||||||||||||| ||||||||||||||||||||||
Sbjct 475 TGTTTTGCCGGGATGGCAGGCGACCATGGAGAAATACCATCAAGAAGCATTGAGGGTTTG 534
Query 465 TAAGTCTATTGCGAAAATAATGGCTTTGGCGCTCGACT-TGGATGTG-GATTACTTTAAT 522
|||| ||||||| | | || |||| ||||||||||| | |||||| | ||||||||| ||
Sbjct 535 TAAGGCTATTGCTAGAGTACTGGCATTGGCGCTCGA-TGTGGATG-GAGATTACTTTGAT 592
Query 523 ACACCAGAGATGCTGGGAAATCCAATTGCAGATATG-GTCTTGTTTCACTATGAAGGGAA 581
| |||||| |||||||||||||| | ||| |||| | |||| |||||||||||||||
Sbjct 593 AAACCAGAAATGCTGGGAAATCCCCTCGCATTTATGCG-CTTGCTTCACTATGAAGGGAT 651
Query 582 GTCTGATCCCTCGAAAGGAATATATGCATGTGGAGCACATTCTGATTTCGGAATGATGTC 641
|||||||||||| ||||||||||||| ||| || ||||||||||||||||||||||| |
Sbjct 652 GTCTGATCCCTCAAAAGGAATATATGGATGCGGCCCACATTCTGATTTCGGAATGATGAC 711
Query 642 TCTCTTAGCAACTGATGGTGTCATGGGACTTCAGATATGCAAGGATAAAGACGTGAAGCC 701
|||||||||||| ||| |||| ||||| || |||||||||||||||| ||||||||||||
Sbjct 712 TCTCTTAGCAACCGATAGTGTAATGGGGCTCCAGATATGCAAGGATAGAGACGTGAAGCC 771
Query 702 TCA-AAAGTGGGAATATACT-CCATCGATTAAAGGAGCCTATATTGTGAATCTTGGTGAT 759
| | ||||||||||||| | |||||||||||||| || |||||||||||| |||||||
Sbjct 772 T-AGGAAGTGGGAATATA-TACCATCGATTAAAGGCGCATATATTGTGAATATTGGTGA- 828
Query 760 C-TGCTTGAGCGTTGGAGTAATGGCTA-TTTCAAATCTACATTGCATCGGGTACTCGGGA 817
| |||| ||||||||||| |||||| | ||| ||||| |||||||||||||||| ||||
Sbjct 829 CTTGCTGGAGCGTTGGAGCAATGGC-ATTTTTAAATCCGCATTGCATCGGGTACTTGGGA 887
Query 818 ATGGGCAGGACCGATATTCTATTCCATTCTTCCTGAAACCGAGTCATGACTGTATAATAG 877
|||| || ||||||||||| ||| ||||||| ||| |||||||||| ||||||||| |||
Sbjct 888 ATGGTCAAGACCGATATTCCATTGCATTCTTTCTGCAACCGAGTCACGACTGTATAGTAG 947
Query 878 AGTGTCTTCCTACCTGCCAGTCTGAAAACAACCTTCCCAAATATCCAGCGATCAAATGTT 937
| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 948 AATGTCTTCCTACCTGCCAGTCTGAAAACAACCCTCCCAAATATCCAGCTATCAAATGTT 1007
Query 938 CAACGTACATCTCCCAACGTTAC 960
|||||||| || |||||||||||
Sbjct 1008 CAACGTACCTCACCCAACGTTAC 1030
> Ahg473661 jgi|Araly1|473661|fgenesh2_kg.1__3615__AT1G35190.1
Length=1210
Score = 728 bits (394), Expect = 0.0
Identities = 765/943 (81%), Gaps = 30/943 (3%)
Strand=Plus/Plus
Query 33 CATCAAAGTTTCTTCCCTTACTTGCATCGATCTCGAC-AACTCTGATCTTCATCAATCAG 91
||| |||||||| || |||| ||| |||||||| | | ||| ||||||||||| ||||
Sbjct 27 CATGAAAGTTTCATCTCTTAATTGTATCGATCTAG-CTAACGATGATCTTCATCTTTCAG 85
Query 92 CTGTTTTACTCAAGCAGGCATGTCTCGATAGTGGATTTTTCTATGTCATAAATCATGGTA 151
|| || || || ||||||| | | ||| |||||||||||||||| || |||||||| |
Sbjct 86 TTGCTTCCCTTAAACAGGCATCTTTGGATTGTGGATTTTTCTATGTGATCAATCATGGGA 145
Query 152 TAAGTGAGGAACTCAAGGATGAGGCTTTCGAGCACAGCAAGAAGTTCTTCGCTCTTCCTT 211
||| || || ||| ||| || | ||||||||| ||||||||||| || || |||||||
Sbjct 146 TAAACGAAGAGTTCATGGAAGATGTTTTCGAGCAGAGCAAGAAGTTTTTTGCCCTTCCTT 205
Query 212 TGGAAGAGAAGATGAAAGTCTTGAGAAACGAAAAGTATCGAGGCTATGCACCAT-TCCAT 270
| || |||||||||||||| ||||||||||||||| || |||||||| |||| | | | |
Sbjct 206 TAGAGGAGAAGATGAAAGTGTTGAGAAACGAAAAGCATAGAGGCTATACACC-TGTTCTT 264
Query 271 GATTCTCTCTTAGA-CCCTGAA-AACCAAGTCCGA-GGGGACT-ACAAAGAGGGTT-TTA 325
||| ||||| ||| || || ||||| | | ||||| | ||||||| |||| |||
Sbjct 265 GATGAAAAATTAGATCCC--AAGAATCAAGT-CAATGGGGA-TCACAAAGAAGGTTATTA 320
Query 326 CCATTGG-GTTCGAAGGTAGC-AAAGATGGTCCCCATTGGGATAAACCATTCCATAGCCC 383
|||||| || ||| || | ||||||| ||| ||||||||||||||||| || ||||
Sbjct 321 -CATTGGAATT-GAA-GTTCCTAAAGATGATCCTCATTGGGATAAACCATTTTATGGCCC 377
Query 384 CAATATTTGGCCTAACCCTGACGTTTTGCCCGGATGGCGGGAGACCATGGAGAAATATTA 443
|| ||||||| | |||| ||||| || || ||||| || || |||||||||||| |
Sbjct 378 TAACCCTTGGCCTGATACTGATGTTTTACCTGGTTGGCGAGAAACAATGGAGAAATATCA 437
Query 444 TCAAGAAGCATTGAGGGTTTGTAAGTCTATTGCGAAAA-TAATGGCTTTGGCGCTCGACT 502
|||||||||||||||||||| |||| |||||| ||||| || |||| || || |||||||
Sbjct 438 TCAAGAAGCATTGAGGGTTTCTAAGGCTATTG-GAAAACTATTGGCGTTAGCACTCGACT 496
Query 503 TGGATGTGGATTACTTTAATA-CACCAGAGATGCTGGGAAATCCAATTGCAGA-TATG-G 559
|||||||||| |||||| ||| | |||||||||| ||||| || |||||| | |||| |
Sbjct 497 TGGATGTGGAATACTTTGATAGGA-CAGAGATGCTTGGAAAGCCTATTGCA-ACTATGCG 554
Query 560 TCTTGTTTCACTATGAAGGGAAGTCTGATCCCTCGAAAGGAATATATGCATGTGGAGCAC 619
||||| | |||| |||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 555 -ATTGTTGCGCTATCAAGGGATTTCTGATCCCTCAAAAGGAATATATGCATGTGGAGCAC 613
Query 620 ATTCTGATTTCGGAATGATGTCTCTCTTAGCAACTGATGGTGTCATGGGACTTCAGATAT 679
|||| ||||||||||||||| |||| ||||| || |||||||| |||||||| |||||||
Sbjct 614 ATTCAGATTTCGGAATGATGACTCTGTTAGCCACCGATGGTGTAATGGGACTCCAGATAT 673
Query 680 GCAAGGATAAAGA-CGTGAAGCCTCAAAAGTGGGAATATACT-CCATCGATTAAAGGAGC 737
|||| ||||| || || || |||||| |||||||||||| | || |||||||||||||
Sbjct 674 GCAAAGATAA-GAACGCGACGCCTCAGAAGTGGGAATATG-TACCGCCGATTAAAGGAGC 731
Query 738 CTATATTGTGAATCTTGGTGATCTGCTTGAGCGTTGGAGTAATGGCTATTTCAAATCTAC 797
| ||| ||||||||||| ||| |||| || |||||||||||||||| ||||||||| ||
Sbjct 732 ATTTATCGTGAATCTTGGCGATATGCTGGAACGTTGGAGTAATGGCTTTTTCAAATCCAC 791
Query 798 ATTGCATCGGGTACTCGGGAATGGGCAGGACCGATATTCTATTCCATTCTTCCTGAAACC 857
||||||||||| || ||||| || ||||| |||||||| ||||||||||| || ||||
Sbjct 792 GTTGCATCGGGTTCTTGGGAACGGTCAGGAACGATATTCCATTCCATTCTTTGTGGAACC 851
Query 858 GAGTCATGACTGTATAATAGAGTGTCTTCCTACCTGCCAGTCTGAAAACAACCTTCCCAA 917
| |||||||||| | | |||||||| || |||||| |||| |||| | ||||||| ||
Sbjct 852 AAATCATGACTGTCTCGTGGAGTGTCTCCCAACCTGCAAGTCGGAAAGCGACCTTCCTAA 911
Query 918 ATATCCAGCGATCAAATGTTCAACGTACATCTCCCAACGTTAC 960
||||||| |||||||||| || || ||| || |||| ||||||
Sbjct 912 ATATCCACCGATCAAATGCTCGACATACCTCACCCAGCGTTAC 954
> Ahg937350 jgi|Araly1|937350|scaffold_501541.1
Length=533
Score = 451 bits (244), Expect = 4e-126
Identities = 270/282 (96%), Gaps = 3/282 (1%)
Strand=Plus/Plus
Query 464 GTAAGTCTATTGCGAAAATAATGGCTTTGGCGCTCGACTTGGATGTGGATTACTTT-AAT 522
||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 1 GTAAGTCTATTGCGAGAATAATGGCTTTGGCGCTCGACTTGGATGTGGATTA-TTTCAAT 59
Query 523 ACACCAGAGATGCTGGGAAATCCAATTGCAGATATGGTCTTGTTTCACTATGAAGGGAAG 582
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 ACACCGGAGATGCTGGGAAATCCAATTGCAGATATGGTCTTGTTTCACTATGAAGGGAAG 119
Query 583 TCTGATCCCTCGAAAGGAATATATGCATGTGGAGCACATTCTGATTTCGGAATGATGTCT 642
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TCTGATCCCTCGATAGGAATATATGCATGTGGAGCACATTCTGATTTCGGAATGATGTCT 179
Query 643 CTCTTAGCAACTGATGGTGTCATGGGACTTCAGATATGCAAGGATAAAGACGTGAAGCCT 702
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 180 CTCTTAGCAACTGATGGTGTAATGGGACTTCAGATTTGCAAGGATAAAGACGTGAAGCCT 239
Query 703 CAAAAGTGGGAATATACTCCATCGATTAAAGGAGCCTATATT 744
|||||||||||||||| |||||| |||||||| | ||| |||
Sbjct 240 CAAAAGTGGGAATATATTCCATCAATTAAAGG-GTCTACATT 280
Score = 320 bits (173), Expect = 1e-86
Identities = 195/205 (95%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 793 TCTACATTGCATCGGGTACTCGGGAATGGGCAGGACCGATATTCTATTCCATTCTTCCTG 852
|||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 273 TCTACATTACATCGGGTACTTGGGAATGGGCAAGACCGATATTCTATTCCATTCTTCCTG 332
Query 853 AAACCGAGTCATGACTGTATAATAGAGTGTCTTCCTACCTGCCAGTCTGAAAACAACCTT 912
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 333 AAACCGAGTCATGACTGTATAATAGAGTGTCTTCCTAACTGCCAGTCCGAAAACAACCTT 392
Query 913 CCC--A-A-ATATCCAGCGATCAAATGTTCAACGTACATCTCCCAACGTTACAAAGCAGT 968
||| | | ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 393 CCCAAATATATATCCAGCGATCAAATGTTCAACGTACATCTCCCCACGTTACAAAGCAGT 452
Query 969 ACATGCACACCTAAAACAGACCTAG 993
|||||||||||||||||||||||||
Sbjct 453 ACATGCACACCTAAAACAGACCTAG 477
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36902983656
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5