BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G46500.1
Length=1212
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485021 jgi|Araly1|485021|fgenesh2_kg.5__1013__AT3G46500.1 1808 0.0
Ahg937351 jgi|Araly1|937351|scaffold_501542.1 676 0.0
Ahg473661 jgi|Araly1|473661|fgenesh2_kg.1__3615__AT1G35190.1 549 2e-155
> Ahg485021 jgi|Araly1|485021|fgenesh2_kg.5__1013__AT3G46500.1
Length=1199
Score = 1808 bits (979), Expect = 0.0
Identities = 1104/1165 (95%), Gaps = 5/1165 (0%)
Strand=Plus/Plus
Query 1 GGAGAACAAAACTCAAGAGGAAGCTTCGACCATTAATGTTTCATCCCTTGCTTGTATAGA 60
||| ||||||||||||||||||||||||||||| ||||||||||| ||| |||| |||||
Sbjct 1 GGAAAACAAAACTCAAGAGGAAGCTTCGACCATCAATGTTTCATCTCTTACTTGCATAGA 60
Query 61 TCTCGCCAACTCCAATCTTCATCGATCAGCTGCTTCGCTTAAGCAGGCTTGGCTCTTCTT 120
|||||||||| |||||||||||| |||||||| | |||||||||||||||| ||||||||
Sbjct 61 TCTCGCCAACACCAATCTTCATCAATCAGCTGATGCGCTTAAGCAGGCTTGTCTCTTCTT 120
Query 121 CTTTCTTTTTCTCAACGTCAATGATTACGGTTTGGCCTTTATTAGTTATGTGACTAGTTG 180
|||| ||||| ||||| |||||||||| || |||| ||||||| |||||||||| ||||
Sbjct 121 CTTTATTTTTATCAACATCAATGATTATGGCGTGGCTTTTATTACTTATGTGACTCGTTG 180
Query 181 TTGGTTATTCTTGTTCTAGGCATGTCTAGATTGTGGATTTTTCTATGTCACAAATCATGG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTGGTTATTCTTGTTCTAGGCATGTCTAGATTGTGGATTTTTCTATGTCACAAATCATGG 240
Query 241 TATAAGTGAGGAGTTAAAGGACGAGGCTTTCGAGCAAAGCAAGAAGTTCTTTGCTCTTCC 300
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TATTAGTGAGGAGTTAAAGGACGAGGCTTTCGAGCAAAGCAAGAAGTTCTTTGCTCTTCC 300
Query 301 TTTGGACGAGAAGATGAAAGTCTTGAAAAACGAAAAACATCAAGGCTATTCACCCGTCCT 360
|||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 301 TTTGGACGAGAAAATGAAAGTCTTGAAAAATGAAAAGCATCAAGGCTATTCACCCGTCCT 360
Query 361 TAGTCAAATCTCTGATAACCAAATCCATGGGGATTACAAAGAAAGTTTTTTCATTGGAAT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TAGTCAAATCTCTGATAACCAAATCCATGGGGATTACAAAGAAAGTTTTTTCATTGGAAT 420
Query 421 CGAAGGCTCCAACGATACACCATTCTGTCGCGCTAACATTTGGCCTAACCCTGATGTTTT 480
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CGAAAGCTCCAACGATACACCATTCTGTCGCGCTAACATTTGGCCTAACCCTGATGTTTT 480
Query 481 GTCGGGATGGCAGGCGACCATGGAGAAATATCATCAAGAAGCATTGAGGGTTTGTAAGGC 540
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 481 GCCGGGATGGCAGGCGACCATGGAGAAATACCATCAAGAAGCATTGAGGGTTTGTAAGGC 540
Query 541 TATTGCTAGAGTATTGGCATTGGCGCTCAACGTGGATGGAGATTACTTTGATACACCGGA 600
||||||||||||| |||||||||||||| | |||||||||||||||||||||| ||| ||
Sbjct 541 TATTGCTAGAGTACTGGCATTGGCGCTCGATGTGGATGGAGATTACTTTGATAAACCAGA 600
Query 601 AATGCTTGGAAATCCCCTCACATTTATGCGCTTGCTTCACTATGAAGGGATGTCTGATCC 660
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AATGCTGGGAAATCCCCTCGCATTTATGCGCTTGCTTCACTATGAAGGGATGTCTGATCC 660
Query 661 CTCAAAAGGAATATATGGCTGCGGGCCACATTCTGATTTTGGTATGATGACTCTCTTAGG 720
|||||||||||||||||| ||||| |||||||||||||| || ||||||||||||||||
Sbjct 661 CTCAAAAGGAATATATGGATGCGGCCCACATTCTGATTTCGGAATGATGACTCTCTTAGC 720
Query 721 AACGGATAGTGTAATGGGGCTCCAGATATGCAAGGATAGAGACGTGAAGCCTAGGAAGTG 780
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 AACCGATAGTGTAATGGGGCTCCAGATATGCAAGGATAGAGACGTGAAGCCTAGGAAGTG 780
Query 781 GGAATATATACTATCGATAAAAGGGGCATATATCGTGAATATTGGTGACTTGCTAGAGCG 840
||||||||||| |||||| ||||| |||||||| |||||||||||||||||||| |||||
Sbjct 781 GGAATATATACCATCGATTAAAGGCGCATATATTGTGAATATTGGTGACTTGCTGGAGCG 840
Query 841 TTGGAGCAATGGCATTTTTAAATCCACATTGCATCGGGTACTTGGGAATGGTCAAGACCG 900
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 841 TTGGAGCAATGGCATTTTTAAATCCGCATTGCATCGGGTACTTGGGAATGGTCAAGACCG 900
Query 901 ATATTCCATTGCATTCTTTCTGCAACCTAGTCACGACTGTATAGTAGAATGTCTTCCTAC 960
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 901 ATATTCCATTGCATTCTTTCTGCAACCGAGTCACGACTGTATAGTAGAATGTCTTCCTAC 960
Query 961 CTGCCAGTCTGAAAACAACCCTCCCAAATATCCAGCTATAAAATGTTCAACGTACCTCAC 1020
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 961 CTGCCAGTCTGAAAACAACCCTCCCAAATATCCAGCTATCAAATGTTCAACGTACCTCAC 1020
Query 1021 TCAACGTTACCAGGATTCACAAGTGGATTTGAGCATCTACAAAAAATAGACCTAAGTGAA 1080
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1021 CCAACGTTACCAGGATTCACAAGTGGATTTGAGCATCTACAAAAAACAGACCTAAGTGAA 1080
Query 1081 AGTCttttt-ggttttttttAGAAAGGTCCAAGCCCTTCCCACTATA-A--A-TGCTTTG 1135
||||||||| || |||| ||||||||||||| |||||||||||||| | | |||||||
Sbjct 1081 AGTCTTTTTTGGAATTTTGTAGAAAGGTCCAATCCCTTCCCACTATATATGAATGCTTTG 1140
Query 1136 GTTTTCTAGTTGGGCTCCTCGTTAA 1160
|| |||||||||||||| | |||||
Sbjct 1141 GTGTTCTAGTTGGGCTCGTTGTTAA 1165
> Ahg937351 jgi|Araly1|937351|scaffold_501542.1
Length=809
Score = 676 bits (366), Expect = 0.0
Identities = 400/417 (96%), Gaps = 0/417 (0%)
Strand=Plus/Plus
Query 389 GGGGATTACAAAGAAAGTTTTTTCATTGGAATCGAAGGCTCCAACGATACACCATTCTGT 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 274 GGGGATTACAAAGAAAGTTTTTTCATTGGAATCGAAGGCTCCAACGATACACCATTCTGT 333
Query 449 CGCGCTAACATTTGGCCTAACCCTGATGTTTTGTCGGGATGGCAGGCGACCATGGAGAAA 508
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 334 CGCGCTAACATTTGGCCTAACCCTGATGTTTTGCCGGGATGGCAGGCGACCATGGAGAAA 393
Query 509 TATCATCAAGAAGCATTGAGGGTTTGTAAGGCTATTGCTAGAGTATTGGCATTGGCGCTC 568
|| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 394 TACCATCAAGAAGCATTGAGGGTTTGTAAGGCTATTGCTAGAGTACTGGCATTGGCGCTC 453
Query 569 AACGTGGATGGAGATTACTTTGATACACCGGAAATGCTTGGAAATCCCCTCACATTTATG 628
| |||||||||||||||||||||| ||| |||||||| |||||||||||| ||||||||
Sbjct 454 GATGTGGATGGAGATTACTTTGATAAACCAGAAATGCTGGGAAATCCCCTCGCATTTATG 513
Query 629 CGCTTGCTTCACTATGAAGGGATGTCTGATCCCTCAAAAGGAATATATGGCTGCGGGCCA 688
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 514 CGCTTGCTTCACTATGAAGGGATGTCTGATCCCTCGAAAGGAATATATGGATGCGGGCCA 573
Query 689 CATTCTGATTTTGGTATGATGACTCTCTTAGGAACGGATAGTGTAATGGGGCTCCAGATA 748
||||||||||| || |||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 574 CATTCTGATTTCGGAATGATGACTCTCTTAGCAACCGATAGTGTAATGGGGCTCCAGATA 633
Query 749 TGCAAGGATAGAGACGTGAAGCCTAGGAAGTGGGAATATATACTATCGATAAAAGGG 805
||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 634 TGCAAGGATAGAGACGTGAAGCCTAGGAAGTGGGAATATATACCATCGATTAAAGGG 690
Score = 257 bits (139), Expect = 1e-67
Identities = 145/148 (98%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 198 AGGCATGTCTAGATTGTGGATTTTTCTATGTCACAAATCATGGTATAAGTGAGGAGTTAA 257
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 128 AGGCATGTCTAGATTGTGGATTTTTCTATGTCACAAATCATGGTATTAGTGAGGAGTTAA 187
Query 258 AGGACGAGGCTTTCGAGCAAAGCAAGAAGTTCTTTGCTCTTCCTTTGGACGAGAAGATGA 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 188 AGGACGAGGCTTTCGAGCAAAGCAAGAAGTTCTTTGCTCTTCCTTTGGACGAGAAAATGA 247
Query 318 AAGTCTTGAAAAACGAAAAACATCAAGG 345
||||||||||||||||||| ||||||||
Sbjct 248 AAGTCTTGAAAAACGAAAAGCATCAAGG 275
Score = 150 bits (81), Expect = 2e-35
Identities = 99/108 (92%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 1 GGAGAACAAAACTCAAGAGGAAGCTTCGACCATTAATGTTTCATCCCTTGCTTGTATAGA 60
||| ||||||||||||||||||||||||||||| ||||||||||| ||| |||| |||||
Sbjct 24 GGAAAACAAAACTCAAGAGGAAGCTTCGACCATCAATGTTTCATCTCTTACTTGCATAGA 83
Query 61 TCTCGCCAACTCCAATCTTCATCGATCAGCTGCTTCGCTTAAGCAGGC 108
|||||||||| |||||||||||| |||||||| | |||||||||||||
Sbjct 84 TCTCGCCAACACCAATCTTCATCAATCAGCTGATGCGCTTAAGCAGGC 131
> Ahg473661 jgi|Araly1|473661|fgenesh2_kg.1__3615__AT1G35190.1
Length=1210
Score = 549 bits (297), Expect = 2e-155
Identities = 704/896 (79%), Gaps = 45/896 (5%)
Strand=Plus/Plus
Query 198 AGGCATGTCTAGATTGTGGATTTTTCTATGTCA-CAAATCATGGTATAAGTGAGGAGTTA 256
|||||| | | |||||||||||||||||||| | | |||||||| |||| || |||||
Sbjct 101 AGGCATCTTTGGATTGTGGATTTTTCTATGTGATC-AATCATGGGATAAACGAAGAGTTC 159
Query 257 AAGGACGAGGCTTTCGAGCAAAGCAAGAAGTTCTTTGCTCTTCCTTTGGACGAGAAGATG 316
| ||| || | ||||||||| ||||||||||| ||||| |||||||| || |||||||||
Sbjct 160 ATGGAAGATGTTTTCGAGCAGAGCAAGAAGTTTTTTGCCCTTCCTTTAGAGGAGAAGATG 219
Query 317 AAAGTCTTGAAAAACGAAAAACATCA-AGGCTATTCACCCGTCCTT-A-GTCAAA-T--C 370
||||| |||| ||||||||| ||| | ||||||| |||| || ||| | | ||| |
Sbjct 220 AAAGTGTTGAGAAACGAAAAGCAT-AGAGGCTATACACCTGTTCTTGATGAAAAATTAGA 278
Query 371 T-CTGATAACCAAATCCATGGGGATTACAAAGAAAGTTTTTTCATT-G----GAA--T-C 421
| | | || ||| || |||||||| |||||||| ||| || |||| | ||| | |
Sbjct 279 TCCCAAGAATCAAGTCAATGGGGATCACAAAGAAGGTTATTACATTGGAATTGAAGTTCC 338
Query 422 -GAAG--GCT-C-CA--ACGATACACCATTCTGTCGCGCTAACATTTGGCCTAACCCTGA 474
||| | | | || |||| |||||| | | || ||||| ||||||| | ||||
Sbjct 339 TAAAGATGATCCTCATTGGGATAAACCATTTTATGGCCCTAACCCTTGGCCTGATACTGA 398
Query 475 TGTTTTGTCGGGATGGCAG-GCGACCATGGAGAAATATCATCAAGAAGCATTGAGGGTTT 533
|||||| | || |||| | | || ||||||||||||||||||||||||||||||||||
Sbjct 399 TGTTTTACCTGGTTGGC-GAGAAACAATGGAGAAATATCATCAAGAAGCATTGAGGGTTT 457
Query 534 GTAAGGCTATTGCTAGAGTATTGGCATTGGCGCTCAACGTGGATG-GAGATTACTTTGAT 592
||||||||||| | | ||||||| || || ||| || |||||| | || |||||||||
Sbjct 458 CTAAGGCTATTGGAAAACTATTGGCGTTAGCACTCGACTTGGATGTG-GAATACTTTGAT 516
Query 593 AC-ACCGGAAATGCTTGGAAATCCCCTCACATTTATGCGCTTGCTT-CACTATGAAGGGA 650
| || | | ||||||||||| || | || |||||| ||| || | |||| ||||||
Sbjct 517 AGGACAG-AGATGCTTGGAAAGCCTATTGCAACTATGCGATTG-TTGCGCTATCAAGGGA 574
Query 651 TGTCTGATCCCTCAAAAGGAATATATGGC-TGCGG-GCCACATTCTGATTTTGGTATGAT 708
| ||||||||||||||||||||||||| | || || || |||||| ||||| || |||||
Sbjct 575 TTTCTGATCCCTCAAAAGGAATATATG-CATGTGGAGC-ACATTCAGATTTCGGAATGAT 632
Query 709 GACTCTCTTAGGAACGGATAGTGTAATGGGGCTCCAGATATGCAAGGATAGAGA-CGTGA 767
|||||| |||| || ||| |||||||||| |||||||||||||| |||| ||| || ||
Sbjct 633 GACTCTGTTAGCCACCGATGGTGTAATGGGACTCCAGATATGCAAAGATA-AGAACGCGA 691
Query 768 AGCCT-AGGAAGTGGGAATATATACTATCGATAAAAGGGGCATATATCGTGAATATTGGT 826
|||| || |||||||||||| ||| |||| ||||| |||| |||||||||| ||||
Sbjct 692 CGCCTCAG-AAGTGGGAATATGTACCGCCGATTAAAGGAGCATTTATCGTGAATCTTGGC 750
Query 827 GACT-TGCTAGAGCGTTGGAGCAATGGCATTTTT-AAATCCACATTGCATCGGGTACTTG 884
|| | |||| || |||||||| |||||| ||||| |||||||| ||||||||||| ||||
Sbjct 751 GA-TATGCTGGAACGTTGGAGTAATGGC-TTTTTCAAATCCACGTTGCATCGGGTTCTTG 808
Query 885 GGAATGGTCAAGACCGATATTCCATTGCATTCTTTCTGCAACCTAGTCACGACTGTATAG 944
|||| ||||| || |||||||||||| |||||||| || |||| | ||| |||||| | |
Sbjct 809 GGAACGGTCAGGAACGATATTCCATTCCATTCTTTGTGGAACCAAATCATGACTGTCTCG 868
Query 945 TAGAATGTCTTCCTACCTGCCAGTCTGAAAACAACCCTCCCAAATATCCAGCTATAAAAT 1004
| || ||||| || |||||| |||| |||| | ||| ||| ||||||||| | || ||||
Sbjct 869 TGGAGTGTCTCCCAACCTGCAAGTCGGAAAGCGACCTTCCTAAATATCCACCGATCAAAT 928
Query 1005 GTTCAACGTACCTCACTCAACGTTACCAGGATTCACAAGTGGATTTGAGCATCTAC 1060
| || || |||||||| || |||||| |||| |||| | | | || |||||||||
Sbjct 929 GCTCGACATACCTCACCCAGCGTTACGAGGAAACACATGCGAAGTTAAGCATCTAC 984
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45251902479
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5