BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G46510.1
Length=2502
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937358 jgi|Araly1|937358|scaffold_501549.1 3179 0.0
> Ahg937358 jgi|Araly1|937358|scaffold_501549.1
Length=2026
Score = 3179 bits (1721), Expect = 0.0
Identities = 1926/2027 (95%), Gaps = 5/2027 (0%)
Strand=Plus/Plus
Query 134 ACAGAGAAGAATCAATTCAATGGAGGAAGAGAAAGCTTCTGCTGCACAGAGCTTAATCGA 193
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3 ACAGAGAAGAATCAA-TCAATGGAGGAAGAGAAAGCTTCTGCTGCACAGAGCTTAATCGA 61
Query 194 TGTAGTTAACGAGATTGCTGCGATTTCTGATTATCGTATAACAGTGAAGAAGCTTTGTTA 253
||||||||||||||||||| ||||||| |||||||| || || |||||||||||||||||
Sbjct 62 TGTAGTTAACGAGATTGCTACGATTTCCGATTATCGAATTACGGTGAAGAAGCTTTGTTA 121
Query 254 TAATCTAGCGAGGAGATTAAAGCTGCTTGTTCCTATGTTTGAGGAAATTAGAGAAAGTAA 313
|||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||
Sbjct 122 TAATCTAGCGAGGAGATTGAAGCTGCTTGTTCCTATGTTTGAGGAAATTAAAGAGAGTAA 181
Query 314 CGAACCGATCAGCGAAGATACGTTGAAGACTTTGATGAATTTGAAGGAAGCTATGTGTTC 373
||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 182 CGAACCGATCAACGAAGATACGTTGAGGACTTTGGTGAATTTGAAGGAAGCTATGTGTTC 241
Query 374 AGCGAAGGATTATCTCAAATTTTGTAGCCAAGGGAGCAAGATTTATCTGGTGATGGAGAG 433
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 242 AGCGAAGGATTTTCTCAAATTTTGTAGCGAAGGGAGCAAGATTTATCTGGTGATGGAGAG 301
Query 434 GGAACAAGTGACAAGTAAATTGATGGAGGTGTCTGTTAAGTTAGAACAATCTTTAAGCCA 493
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 302 GGAACAAGTGACAAGTAAATTGATGGAGGTGTCTGTTAAGTTAGAACAATCTTTGAGCCA 361
Query 494 GATTCCATATGAAGAACTCGATATATCGGATGAAGTTAGAGAACAGGTTGAGCTGGTTCT 553
|||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 GATTCCGTATGAGGATCTCGATATATCGGATGAAGTTAGAGAACAGGTTGAGCTGGTTCT 421
Query 554 TAGTCAGTTTCGGCGAGCTAAAGGAAGAGTAGATGTATCAGATGATGAGCTATATGAAGA 613
|| ||||||||||| |||||||||||||||||||| ||||| ||||| |||||||||||
Sbjct 422 CAGCCAGTTTCGGCGGGCTAAAGGAAGAGTAGATGTGTCAGACGATGAACTATATGAAGA 481
Query 614 TCTTCAGTCGCTTTGCAACAAAAGTAGTGATGTAGATGCTTATCAGCCTGTGCTAGAGCG 673
|||||||||||| |||||||||||||||||||||||||||| |||||||| || |||||
Sbjct 482 TCTTCAGTCGCTGTGCAACAAAAGTAGTGATGTAGATGCTTGTCAGCCTGCCCTGGAGCG 541
Query 674 GGTTGCGAAGAAGTTACATTTGATGGAGATTCCTGACCTAGCTCAAGAATCAGTGGCTCT 733
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 542 GGTTGCGAAGAAGTTACAGTTGATGGAGATTCCTGACCTAGCTCAAGAATCAGTGGCTCT 601
Query 734 GCATGAAATGGTTGCTTCAAGCGGTGGAGATGTTGGTGAAAATATTGAGGAGATGGCAAT 793
||| |||||||||||||| ||||||||||| | ||||||||| |||||||||||||||||
Sbjct 602 GCACGAAATGGTTGCTTCGAGCGGTGGAGACGCTGGTGAAAACATTGAGGAGATGGCAAT 661
Query 794 GGTATTAAAGATGATTAAGGATTTTGTGCAGACGGAGGATGATAATGGCGAGGAGCAGAA 853
|||| |||| | |||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 662 GGTACTAAAAAAGATTAAGGATTTTGTGCAGACGGAGGATGACAATGGTGAGGAGCAGAA 721
Query 854 AGTAGGAGTTAACTCTAGAAGCAATGGACAGACTTCTACGGCAGCGAGTCAGAAGATACC 913
|||||| |||||||| |||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 722 AGTAGGGGTTAACTCAAGAAACAATGGACAAACTTCTACGGCAGCGAGTCAGAAGATACC 781
Query 914 TGTGATTCCTGATGATTTTCGCTGTCCGATTTCGCTGGAAATGATGAGAGATCCAGTTAT 973
|| |||||||||||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct 782 CGTAATTCCTGATGATTTCCGTTGTCCGATATCGCTGGAAATGATGAGAGATCCAGTTAT 841
Query 974 TGTTTCATCAGGGCAGACATACGAACGCACATGTATTGAGAAATGGATAGAAGGTGGACA 1033
||||||||||||||||| |||||||| || ||||||||||| |||||||||||||||||
Sbjct 842 AGTTTCATCAGGGCAGACCTACGAACGAACCTGTATTGAGAAGTGGATAGAAGGTGGACA 901
Query 1034 CTCGACATGTCCAAAAACACAGCAGGCGCTAACAAGCACAACCCTCACACCAAACTATGT 1093
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 CTCGACATGTCCAAAAACACAGCAGGCGCTAACAAGCACAACCCTCACACCAAACTATGT 961
Query 1094 TCTCCGTAGTCTCATAGCTCAGTGGTGCGAGGCCAACGATATTGAGCCTCCAAAGCCTCC 1153
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 962 TCTCCGTAGTCTCATAGCTCAGTGGTGCGAGGCCAATGATATCGAGCCTCCAAAGCCTCC 1021
Query 1154 GAGCAGTTTAAGACCCAGAAAAGTATCGTCCTTCTCATCTCCC-GCAGAAGCGAACAAGA 1212
|||||||||||||||||||||||||||||| ||||| || ||| |||||||| |||||||
Sbjct 1022 GAGCAGTTTAAGACCCAGAAAAGTATCGTCATTCTCGTC-CCCAGCAGAAGCAAACAAGA 1080
Query 1213 TTGAAGATCTTATGTGGAGACTTGCGTACGGAAACCCCGAGGACCAACGATCTGCAGCTG 1272
|||||||||||||||||||||| || || |||||||| ||||||||||||||||||||||
Sbjct 1081 TTGAAGATCTTATGTGGAGACTCGCTTATGGAAACCCTGAGGACCAACGATCTGCAGCTG 1140
Query 1273 GGGAAATCCGCCTTCTTGCAAAACGAAATGCAGACAACCGCGTGGCCATAGCCGAAGCTG 1332
| |||||||||||||||||||||||||||||||| ||||| ||||| || ||||||||||
Sbjct 1141 GAGAAATCCGCCTTCTTGCAAAACGAAATGCAGATAACCGTGTGGCTATTGCCGAAGCTG 1200
Query 1333 GAGCCATACCTCTTCTCGTAGGTCTCCTCTCAACTCCTGATTCTCGTATTCAAGAACATT 1392
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1201 GAGCCATACCTCTTCTCGTAGGCCTCCTCTCAACTCCTGATTCTCGTATCCAAGAACATT 1260
Query 1393 CGGTAACAGCTCTTCTAAACCTCTCCATATGTGAGAACAACAAAGGAGCCATTGTTTCAG 1452
| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1261 CAGTAACAGCTCTCCTAAACCTCTCTATATGTGAGAACAACAAAGGAGCCATTGTTTCTG 1320
Query 1453 CTGGAGCTATTCCTGGTATAGTTCAAGTGCTTAAGAAAGGAAGCATGGAGGCCAGAGAGA 1512
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1321 CTGGAGCAATTCCTGGTATAGTTCAAGTGCTCAAGAAAGGAAGCATGGAGGCCAGAGAGA 1380
Query 1513 ATGCGGCGGCTACACTTTTCAGTCTATCAGTGATCGATGAAAATAAAGTGACTATCGGTG 1572
|||||||||| ||||| ||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1381 ATGCGGCGGCCACACTGTTCAGTCTATCAGTGATTGATGAAAACAAAGTGACTATCGGTG 1440
Query 1573 CCTTAGGAGCAATTCCGCCACTCGTTGTATTACTTAATGAAGGTACACAAAGAGGCAAGA 1632
| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 CATTAGGAGCAATTCCACCGCTCGTTGTATTACTTAATGAAGGTACACAAAGAGGCAAGA 1500
Query 1633 AAGATGCTGCTACTGCACTCTTTAACCTCTGTATATACCAAGGAAACAAAGGAAAAGCTA 1692
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1501 AAGATGCTGCTACTGCACTCTTTAACCTCTGTATATACCAAGGAAACAAAGGAAAAGCCA 1560
Query 1693 TACGTGCAGGAGTGATTCCCACGTTGACTAGACTCTTGACAGAGCCCGGAAGCGGAATGG 1752
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1561 TACGTGCAGGAGTGATTCCCACATTGACTAGACTCTTGACAGAGCCCGGAAGCGGAATGG 1620
Query 1753 TCGATGAGGCACTCGCGATTTTGGCGATTCTCTCTAGCCACCCCGAAGGAAAAGCAATCA 1812
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1621 TCGATGAGGCACTCGCGATTTTGGCGATTCTCTCTAGCCACCCCGAAGGGAAAGCAATCA 1680
Query 1813 TAGGATCCTCTGATGCAGTCCCAAGTTTGGTTGAGTTTATCAGAACTGGCTCGCCTAGAA 1872
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1681 TAGGATCCTCTGATGCAGTCCCAAGTCTGGTTGAGTTTATCAGAACTGGCTCGCCTAGAA 1740
Query 1873 ACAGAGAAAACGCAGCTGCTGTTCTAGTCCACCTCTGTTCTGGAGACCCACAACATCTTG 1932
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1741 ACAGAGAAAACGCAGCTGCGGTTCTAGTCCACCTCTGTTCTGGAGACCCACAACATCTTG 1800
Query 1933 TCGAAGCGCAGAAACTCGGCCTTATGGGTCCATTGATAGATTTAGCTGGAAATGGGACGG 1992
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1801 TCGAAGCGCAGAAACTCGGCCTTATGGGTCCATTGATAGATTTGGCTGGAAATGGGACGG 1860
Query 1993 ATAGAGGGAAACGAAAAGCAGCGCAGTTGCTTGAACGCATCAGCCGTCTCGCTGAACAGC 2052
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1861 ATAGAGGGAAACGAAAAGCAGCTCAGTTGCTTGAACGCATCAGCCGTCTCGCTGAACAGC 1920
Query 2053 AGAAGGAAACGGCTGTGTCACAA-CCGGAAGAAGAAGCTGAACCAACACATCCAGAATCC 2111
|||||||||||||| ||||||| ||| |||||||||||||||||||| || ||| ||||
Sbjct 1921 AGAAGGAAACGGCTCAGTCACAATCCG-AAGAAGAAGCTGAACCAACAAATTCAGTATCC 1979
Query 2112 ACCACAGAAGCTGCAGATACTTAAAGATTGTCTTTGTTTTGGATCCT 2158
||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1980 ACCGCAGAAGCTGCAGATACTTAAAGATTGTCTTTGTTTTGGGTCCT 2026
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94311446620
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5