BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G46540.1
Length=1213
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937360 jgi|Araly1|937360|scaffold_501551.1 1443 0.0
> Ahg937360 jgi|Araly1|937360|scaffold_501551.1
Length=975
Score = 1443 bits (781), Expect = 0.0
Identities = 903/962 (94%), Gaps = 7/962 (1%)
Strand=Plus/Plus
Query 149 TGGTTCTTGATAATAATTTGAAAGAAAGATGTCAATGATGAGC-AGAACTCGAAGCAGCA 207
|||||||||| |||| |||| |||||||||||||||||||||| | ||| |||||||||
Sbjct 1 TGGTTCTTGAGAATACTTTG-AAGAAAGATGTCAATGATGAGCAAAAAC-AGAAGCAGCA 58
Query 208 TCGCCATGGGAACACCATCTTTCCTTGAGTTGAAGAAACAAGCTTCATTTTTCTTCAAAG 267
|||||| |||||||||||| ||||||||||||||||||||||| || |||||||||||||
Sbjct 59 TCGCCAAGGGAACACCATCGTTCCTTGAGTTGAAGAAACAAGCCTCTTTTTTCTTCAAAG 118
Query 268 AGAAGCTTAAAACGGCGCGTTTAGCTCTCACCGATGTTACTCCTCTTCAACTAATGACTG 327
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 AGAAGCTCAAAACGGCGCGTTTAGCTCTCACCGATGTTACTCCTCTTCAACTAATGACTG 178
Query 328 AGGAAGCTACGGATGGTGAGTCATGTGGACCAAATACACAAACCTTAGGGTCCATTTCAA 387
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 179 AGGAAGCTACGGATGGTGAGTCATGTGGACCAAATACACAAACCTTAGGAACCATTTCAA 238
Query 388 AGGCTGCTTTTGAGTTTGAAGATTACTTGGCGATTGTTGAAGTCTTGCACAAAAGATTGG 447
|||| ||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 239 AGGCCGCTTTCGAGTTTGAAGATTACTTGGCCATTGTCGAAGTCTTGCACAAAAGATTGG 298
Query 448 CAAAGTTCGATAAGAGAAACTGGAGGATGGCTTATAACTCACTAATAGTTGTTGAGCATT 507
||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 299 CAAGGTTTGATAAGAGAAACTGGAGGATGGCTTATAACTCACTCATAGTTGTTGAACATT 358
Query 508 TACTCACTCATGGACCAGAGAGTGTTTCCGATGAGTTTCAAGGTGATATAGATGTTATCT 567
| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 359 TGCTCACTCATGGACCAGAGAGTGTTTCCGATGAGTTTCAAGGCGATAGAGATGTTATCT 418
Query 568 CCCAAATGCAAACCTTCCAACAGATTGACGAGAAAGGGTTTAATTGGGGATTAGCTGTTA 627
||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 419 TCCAAATGCAGACTTTCCAACAGATCGACGAGAAAGGGTTTAATTGGGGATTAGCTGTTA 478
Query 628 GAAAGAAAGCAGAGAAGGTTTTAAAGCTACTTGAGAAAGGGGAATTACTTAAGGAAGAAA 687
|||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
Sbjct 479 GAAAGAAAGCAGAGAAGGTTTTGAAGCTACTTGAGAAAGGGGAATTGCTTAAGGAAGAGA 538
Query 688 GGAAGCGAGCTCGTGAGCTGTCTCGAGGGATTCAAGGTTTCGGTAGCTTTAACCACAAGT 747
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 539 GGAAGCGAGCTCGTGAGCTGTCTCGAGGGATTCAAGGTTTTGGTAGCTTCAACCACAAGT 598
Query 748 CTTCATCTCATTCTTTGTCAGAGCATGAAGTCTTACAAGAATCTACAGTCTATAGGAAAT 807
|||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 599 CTTCATCTCATTCTATGTCAGAGAATGAAGTCGTACAAGAATCTACAGTCTATAGGAAAT 658
Query 808 GTAATTCCAATTTTACCAAGAATTACGATGAGGATGACCAAGAGAACACTATGGTTTCTC 867
| |||||||| ||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 659 GCAATTCCAACTTTACCAAGAAGCACAATGAGGATGACCAAGAGAACACTATGGTTTCTC 718
Query 868 CTAATGACGCCAACCTTTTTCCTCAGCCGCTGGTAGCTGACCCGAGCGAGGAATCTAGGA 927
||||||||||| || |||||||||||||||||| |||||||||| |||||||||||||
Sbjct 719 CTAATGACGCCGACAACTTTCCTCAGCCGCTGGTAACTGACCCGAGGGAGGAATCTAGGA 778
Query 928 CGGGTATGAAAGAAAATATGGATCCTGAAGATGATGAGAACACAGAGGTAAACCCACTTT 987
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 CGAGTATGAAAGAAAATATGGATCCTGAAGATGATGAGAACACAGAGGTAAACCCACTTT 838
Query 988 TGGGTTTTAGTAAAAAGGAGGGTCAAGAACTAGCCGGAGAAGACGAGAACCATCCATTTA 1047
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TGGGTTCTCTTAAAAAGGAGGGTCAAGAACTAGCCGGAGAAGACGAGAACCATCCATTTA 898
Query 1048 CGGATGGCGAGAGTAAGCATACAGTAGTCT--T-GCTTGATGAGAACACAGATT-AAATT 1103
||||||| |||||||||||||||||||||| | |||||||||||| ||||| | |||||
Sbjct 899 CGGATGGTGAGAGTAAGCATACAGTAGTCTCATTGCTTGATGAGAATACAGACTGAAATT 958
Query 1104 TT 1105
||
Sbjct 959 TT 960
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45290025396
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5