BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G46550.1
Length=1419
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937361 jgi|Araly1|937361|scaffold_501552.1 1997 0.0
> Ahg937361 jgi|Araly1|937361|scaffold_501552.1
Length=1306
Score = 1997 bits (1081), Expect = 0.0
Identities = 1216/1282 (95%), Gaps = 6/1282 (0%)
Strand=Plus/Plus
Query 1 ATGGCGAACGTAATCTCAATTTCCCATTTTACCCTTCTCGCATTACCTTATTTACTTCTC 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 24 ATGGCGAACGTAATTTCAATTTCCCATTTTACCCTTCTCGCATTACCTTATTTACTTCTC 83
Query 61 CTCCTATCTTCCACCGCCGCCGCAATTAACGTCACCGCCGTCCTCTCCTCTTTCCCTAAT 120
||| |||| |||||||||||||| || ||||||||||||||||||||||| ||||||||
Sbjct 84 CTCTTATCCTCCACCGCCGCCGCCATCAACGTCACCGCCGTCCTCTCCTCATTCCCTAAC 143
Query 121 CTCTCATCTTTCTCAAACCTCCTCGTCTCTTCCGGCATCGCTGCCGAACTCTCCGGTAGA 180
|| || |||||||| |||||||||||||| ||||||||||| || || || ||||||||
Sbjct 144 CTTTCCTCTTTCTCCAACCTCCTCGTCTCCTCCGGCATCGCCGCTGAGCTTTCCGGTAGG 203
Query 181 AACTCATTAACCCTCCTCGCCGTTCCCAATTCTCAATTCTCCTCCGCCTCCTTGGACCTC 240
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 204 AACTCATTAACCCTCCTCGCCGTTCCCAATTCTCAATTCTCCTCCGCCACCTTGGACCTC 263
Query 241 ACGCGCCGCCTACCTCCTTCCGCCCTAGCAGATCTCCTCCGCTTCCATGTCCTCCTCCAG 300
|||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||
Sbjct 264 ACGCGCCGCCTACCTCCTTCAGCCCTCGCAGATCTCCTCCGCTTCCATGTCCTTCTCCAG 323
Query 301 TTCCTTTCAGATTCCGATCTCCGACGTATTCCACCGTCAGGCTCCGCCGTCACTACTCTC 360
||||| ||||||||||||||||||||| | ||||||||||||||||| || |||||||||
Sbjct 324 TTCCTCTCAGATTCCGATCTCCGACGTCTCCCACCGTCAGGCTCCGCAGTTACTACTCTC 383
Query 361 TACGAAGCTTCCGGTCGTACATTCTTTGGATCTGGATCCGTTAACGTAACCCGTGACCCG 420
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 384 TACGAAGCTTCCGGTCGTACATTCTTTGGATCTGGATCCGTTAACGTCACCCGTGACCCA 443
Query 421 GCTTCAGGATCCGTCACGATCGGATCTCCAGCCACCAAAAACGTCACTGTGTTAAAGCTT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 444 GCTTCAGGATCCGTCACGATCGGATCTCCAGCCACCAAAAACGTCACTGTGTTAAAGCTT 503
Query 481 CTCGAGACCAAACCTCCCAACATAACCGTCCTCACCGTGGACTCCCTCATCGTCCCCACC 540
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 504 CTCGAGACCAAACCTCCCAACATAACCGTCCTCACCGTCGACTCCCTCATCGTCCCCACC 563
Query 541 GGAATCGATATCACCGCATCGGAGACTCTCACTCCACCGCCGACGTCAACATCTCTCTCC 600
|||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||
Sbjct 564 GGAATCGATATCACTGCCTCGGAGACTCTCACTCCACCGCCGACATCAACATCTCTCTCC 623
Query 601 CCTCCACCGGCGGGAATCAATCTCACTCAGATACTAATCAACGGACACAACTTCAACGTC 660
||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 624 CCTCCTCCGGCGGGAATCAACCTCACTCAGATACTAATCAACGGCCACAACTTCAACGTC 683
Query 661 GCTCTATCCCTCCTCGTCGCTTCCGGTGTCATAACAGAATTCGAAAACGACGAACGTGGC 720
||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 684 GCTCTCTCTCTCCTCGTCGCTTCCGGAGTCATAACAGAATTCGAAAACGACGAACGTGGC 743
Query 721 GCCGGCATCACAGTCTTCGTCCCCACCGACTCCGCCTTCTCCGATCTCCCTTCCAACGTT 780
||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 744 GCCGGAATCACCGTCTTCGTCCCCACCGACTCCGCCTTCTCCGATCTCCCGTCCAATGTC 803
Query 781 AACCTCCAGTCATTACCGGCGGAGCAAAAAGCATTCGTGTTAAAATTCCACGTGCTACAT 840
||||||||||| |||||||||| ||||||||| ||||||||||||||||| |||||||||
Sbjct 804 AACCTCCAGTCTTTACCGGCGGCGCAAAAAGCCTTCGTGTTAAAATTCCATGTGCTACAT 863
Query 841 TCATACTACACTCTCGGTTCACTAGAATCAATAACCAACCCGGTTCAACCGACATTAGCC 900
||||||||||| ||||| || ||||||||||||||||| |||||||||||||||||||||
Sbjct 864 TCATACTACACACTCGGCTCGCTAGAATCAATAACCAATCCGGTTCAACCGACATTAGCC 923
Query 901 ACTGAAGAAATGGGAGCCGGTTCATACACTCTCAACATCTCCCGGGTTAACGGGTCAATC 960
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 924 ACTGAAGAAATGGGAGCCGGTTCTTACACTCTCAACATCTCCCGGGTTAACGGGTCAATC 983
Query 961 GTAACGATCAATTCGGGTGTGGTTTTAGCTGTTGTGACTCAAACGGCTTTTGATCAAAAC 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 984 GTAACGATCAATTCGGGTGTGGTTTTAGCTGTTGTGACTCAAACGGCTTTTGATCAAAAC 1043
Query 1021 CCGGTTTCTGTTTTCGGAGTATCCAAAGTTCTTTTGCCTAAAGAACTATTTCCAAAATCG 1080
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1044 CCGGTTTCTGTTTTCGGAGTATCCAAAGTTCTTTTGCCTAAAGAACTGTTTCCAAAATCG 1103
Query 1081 GGTCAACCCGTTGCCACAGCTCCTCCACAGGAGATTTCTTTGTCGCCGGAGAGTTCT-AG 1139
|||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||| |
Sbjct 1104 GGTCAACCCGTTGCAACAGCTCCTCCACATGAGATATCTTTGTCGCCGGAGAGTTCTGA- 1162
Query 1140 TGAACAGCCGTC-ACGACTAGTATCACCACCGCGTGAGATAGTTTCTTCCGGCGCGGTTA 1198
|||||||||||| | || ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1163 TGAACAGCCGTCGA-GATTAGTATCACCACCGCGTGAGATAGTTTCTTCCGGCACGGTTA 1221
Query 1199 AAAGACCACTTGGTTTCTTGGTCTTGTGGTGTTGGTGTATAGCATTTTGTTATGTTTTGG 1258
||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1222 AAACAACACTTGGTTTCTTGGCCTTGTGGTGTTGGTGTATAGCATTTTGTTATGTTTTGG 1281
Query 1259 TATGAtttttttttctttcttt 1280
||||||||||||| |||| |||
Sbjct 1282 TATGATTTTTTTT-CTTT-TTT 1301
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53059711285
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5