BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G46560.1

Length=538
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg485026 jgi|Araly1|485026|fgenesh2_kg.5__1018__AT3G46560.1         654    0.0  


> Ahg485026 jgi|Araly1|485026|fgenesh2_kg.5__1018__AT3G46560.1
Length=487

 Score =  654 bits (354),  Expect = 0.0
 Identities = 440/478 (92%), Gaps = 20/478 (4%)
 Strand=Plus/Plus

Query  39   Gaa-aaaaaTGGACGCAAGCATGATGGCTGGACTTGATGGTCTTCCTGAAGAAGACAAAG  97
            ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  23   GAAGAAAAATGGACGCGAGCATGATGGCTGGACTTGATGGTCTTCCTGAAGAAGACAAAG  82

Query  98   CCAAAATGGCCTCCATGATCGATCAGCTTCAGCTCCGTGATAGTTTGAGGATGTACAATT  157
            ||| |||||||||||||||||||||||||||||| || || || |||| |||||||||||
Sbjct  83   CCACAATGGCCTCCATGATCGATCAGCTTCAGCTACGCGACAGCTTGAAGATGTACAATT  142

Query  158  CATTGGTGGAGAGGTGTTTCGTGGACTGTGTTGATAGCTTCACACGCAAATCTCTGCAGA  217
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  143  CATTGGTGGAGAGGTGTTTTGTGGACTGTGTTGATAGCTTCACACGCAAATCTCTGCAGA  202

Query  218  AACAAGAGGAGACTTGTGTGATGCGTTGCGCTGAGAAGTTCCTTAAGCATACGATGCGTG  277
            ||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||
Sbjct  203  AACAAGAGGAGACTTGTGTTATGCGGTGTGCTGAGAAGTTCCTTAAGCATACGATGCGTG  262

Query  278  TTGGTATGCGGTTTGCTGAGCTCAATCAGAACGCACCAACCCAAGACTGATATAGTCTGC  337
            |||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||
Sbjct  263  TTGGTATGCGGTTTGCTGAGCTCAATCAGAACGCACCAACCCAAGACTGA-A-ACTCTGC  320

Query  338  TTTTTCTGTTTGGTTTTTTCGTACGGTTTACGAGTCCGAAACCAGAATAAACCGGTTGTT  397
            || ||| ||||||||||   |||||||||| |||||||||||||||||||||||||||||
Sbjct  321  TTCTTCAGTTTGGTTTTG--GTACGGTTTATGAGTCCGAAACCAGAATAAACCGGTTGTT  378

Query  398  AGTTGTTCAGGTTACTACTCCGATACTGTTTTTT-GAACATC---T-T-GTACTGTGAAA  451
            |||||||||||||||| ||  ||||||||||||| |||||||   | | |||||||||||
Sbjct  379  AGTTGTTCAGGTTACT-CT--GATACTGTTTTTTTGAACATCAACTCTTGTACTGTGAAA  435

Query  452  TTATTTTGACTGTATCCAGTTCTGATATTGATATTGACTTGTATTTCAATGGAGTCTA  509
            |||||||||||  ||||||||||||||||||| |||  |   ||||||||||||||||
Sbjct  436  TTATTTTGACTAAATCCAGTTCTGATATTGAT-TTG--T---ATTTCAATGGAGTCTA  487



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19611972746


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5