BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G46570.1
Length=1071
Score E
Sequences producing significant alignments: (Bits) Value
Ahg897475 jgi|Araly1|897475|Al_scaffold_0005_1441 1476 0.0
> Ahg897475 jgi|Araly1|897475|Al_scaffold_0005_1441
Length=1053
Score = 1476 bits (799), Expect = 0.0
Identities = 973/1057 (92%), Gaps = 12/1057 (1%)
Strand=Plus/Plus
Query 1 ATGTTGGGATCTAGA-GTTGTTCATCAACTTTACTTCCTAATTCTCACTCTCATCCTTCC 59
|||||||||||| || ||||||| |||||||| ||||||||| |||||||||||||||||
Sbjct 1 ATGTTGGGATCT-GATGTTGTTCCTCAACTTTTCTTCCTAATACTCACTCTCATCCTTCC 59
Query 60 CTTCTCCGCTGCATATCAAGTCGGCGTAAACTACGGCACCGTGGCCAACAACCTCCCACC 119
||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 60 CTTCTCCGCCGCATATCACGTCGGCGTAAACTACGGCACGGTGGCCAACAACCTCCCACC 119
Query 120 GCCTCACCAAGTCGTCAACTTCATCAAAACAAAAACAATA-ATCAACCACGTCAAAATCT 178
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 120 GCCTCACCAAGTCGTCAACTTCATCAAAACAAAAACAA-ACATCAACCACGTCAAAATCT 178
Query 179 TCGACACAAACCACGACATCCTCGCCGCATTTTCCGGCATTACAGGAATCTCCCTCACCG 238
|||||||||||| ||||||||||||||||||||||||||| || | ||||||||||||||
Sbjct 179 TCGACACAAACCCCGACATCCTCGCCGCATTTTCCGGCATCACTGAAATCTCCCTCACCG 238
Query 239 TCACCGTCCCAAACTCCGATATCATTTCTCTTTCCAAGCTTTCCAACGCACGTTCATGGC 298
|||| ||||||||||||| ||| |||| || ||||||||| ||||||||||||||||||
Sbjct 239 TCACAATCCCAAACTCCGACATCCTTTCCCTCTCCAAGCTTCCCAACGCACGTTCATGGC 298
Query 299 TCTCCGACAACCTCCTCCCCTTCCTCCTAACAACTTCAATCCGTTACATTGCTGTCGGAA 358
||||| || |||||||||| ||||||| |||||| |||||| ||||||||||||||||||
Sbjct 299 TCTCCAACCACCTCCTCCCTTTCCTCCCAACAACCTCAATCAGTTACATTGCTGTCGGAA 358
Query 359 ACGAAGTCGTCGCCACATCCGACAAAACCCTCATCACTCATCTCCTTCCCGCTATGGAGA 418
|||||||| ||||||||||||||||||| |||||||||||||| |||||||| ||||| |
Sbjct 359 ACGAAGTCATCGCCACATCCGACAAAACACTCATCACTCATCTTCTTCCCGCCATGGA-A 417
Query 419 -CGCTTACGTTAGCATTACACCTTGCTAACGTCAGTAGG-ATCTTAGTCTCGACGCCTCA 476
||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||
Sbjct 418 TCGCTTACGTTAGCATTACACCTTGCTAACGTCACT-GGTATCTTAGTCTCGACGCCTCA 476
Query 477 CTCGCTCGGTATCCTCTCAGGCTCCTCCGAGCCACCTAGCTCCGGAAAGTTCCGTAAAGG 536
|||||| ||||||||||| ||||| || ||||| ||||||||||||||||||||||| ||
Sbjct 477 CTCGCTAGGTATCCTCTCGGGCTCTTCGGAGCCTCCTAGCTCCGGAAAGTTCCGTAATGG 536
Query 537 GTACGACAAAGCCATCTTCTCTCCAATCCTAGACTTCCACAACCGCACCAAGTCTCCTTT 596
|||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||
Sbjct 537 CTACGACAAAGCCATCTTCACTCCAATCCTTGACTTCCACAACCGCACTAAGTCTCCTTT 596
Query 597 TATGGTTAACCCGTATCCATATTTCGGTTTCGGACCTGAAACGTTAAACTACGCACTCTT 656
|||||||||||||| ||||||||||||| |||||| ||||| ||||||||||||||||
Sbjct 597 CATGGTTAACCCGTACCCATATTTCGGTTCCGGACCCGAAACACTAAACTACGCACTCTT 656
Query 657 TAACACAAACGACGTT-GTATAT-GTTGACCCGGTTACGAAGTTGAACTACACCAACATG 714
|||| | |||||| | || | | |||||||||||||||||| |||||||||||||||||
Sbjct 657 TAACTCCAACGAC-TACGTTT-TCGTTGACCCGGTTACGAAGATGAACTACACCAACATG 714
Query 715 TTCGACGCTCAGCTTGATGCTGTTTACTCCGCAATGAAACGATTTGGGTACGGTGACGTG 774
|| ||||||||||||||||| || |||||||||||||||||| | || ||||||||||||
Sbjct 715 TTTGACGCTCAGCTTGATGCGGTATACTCCGCAATGAAACGAATCGGTTACGGTGACGTG 774
Query 775 GACATTGTTGTGGCTGAGACCGGTTGGCCTTCAGCTGGTGAACCGAACCAAACCGGCGTC 834
||||| || |||||||||||||||||||| || ||||||||||||||||| || ||||||
Sbjct 775 GACATCGTCGTGGCTGAGACCGGTTGGCCCTCGGCTGGTGAACCGAACCAGACTGGCGTC 834
Query 835 GGTTTAGATTATGCCGCAGCTTACAATGGGAACCTTATAAAGCATGTGAATTCTGGTAAG 894
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 835 GGTTTAGATTATGCGGCAGCTTACAATGGGAATCTTATAAAGCATGTGAATTCTGGTAAG 894
Query 895 GGCACTCCATTGATGCCAAACCGGGTTTTCGAAACTTATGTTTTTTCTCTCTTCAACGAG 954
||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 895 GGCACTCCACTGATGCCAAACCGGGTTTTCGAGACTTACATTTTTTCTCTCTTCAACGAA 954
Query 955 AATCTCAAATCTTCGGTTTCAGAGCAAAACTTCGGTTTGTTTAAACCGGACTTCACCCCG 1014
|||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
Sbjct 955 AATCTCAAATCTTCGGTTTCTGAGCAAAACTTCGGTTTGTTTAAACCAGACTTCACCCAG 1014
Query 1015 GTTTACGATGTCGGTATCATGAAAACAAATAAGGTAT 1051
||||| |||||||||||||||||||||||||||||||
Sbjct 1015 GTTTATGATGTCGGTATCATGAAAACAAATAAGGTAT 1051
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39876571182
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5