BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G46580.1
Length=865
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485028 jgi|Araly1|485028|fgenesh2_kg.5__1020__AT3G46580.1 1149 0.0
> Ahg485028 jgi|Araly1|485028|fgenesh2_kg.5__1020__AT3G46580.1
Length=836
Score = 1149 bits (622), Expect = 0.0
Identities = 774/846 (91%), Gaps = 15/846 (2%)
Strand=Plus/Plus
Query 14 CATACCTTTCTCTGGAGACCTCCACAGGGTTTGTTTCCGGAAATGTCGAACGGCACGGAT 73
||| ||||||||| ||||||||||||||| ||| |||||||||||||||||||| | |||
Sbjct 1 CATTCCTTTCTCTCGAGACCTCCACAGGG-TTGGTTCCGGAAATGTCGAACGGCCCAGAT 59
Query 74 CAGGCTCAACCACCACCGGAGAACCCGGCTACTCCGGTGGATTCGAAGTCACGGAAACGT 133
|||||||||||||| ||||| ||| | |||| |||||| ||||||||||||||||| |||
Sbjct 60 CAGGCTCAACCACCGCCGGAAAACACAGCTAATCCGGTAGATTCGAAGTCACGGAAGCGT 119
Query 134 GCGACGCCAGGGGATGATAATTGGCTTCCTCCTGATTGGAGAACCGAAATTAGGGTTCGA 193
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 120 GCGACGCCTGGGGATGATAATTGGCTTCCTCCTGATTGGAGAACCGAAGTTAGGGTTCGA 179
Query 194 ACCTCTGGCACTAAAGCTGGTACTGTTGATAAGTTCTACTACGAACCGATTACGGGTCGT 253
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 180 ACCTCTGGCACTAAAGCTGGTACTGTCGATAAGTTCTACTACGAACCGATTACGGGTCGT 239
Query 254 AAGTTCCGGTCCAAGAACGAGGTTTTGTACTATTTGGAACACGGGACGCCTAAAAAGAAG 313
|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
Sbjct 240 AAGTTCCGGTCCAAGAACGAGGTTTTGTACTACTTGGAACACGGGATACCTAAAAAG--G 297
Query 314 TCCGTCAAGACAGCGGAAAACGGAGACTCACATTCCGAACATTCTGAAGGTAGAGGAAGC 373
||||||||| |||||||||||||||||| | ||||||||||||||||||| ||||||||
Sbjct 298 -CCGTCAAGAAAGCGGAAAACGGAGACTCGCTTTCCGAACATTCTGAAGGTCGAGGAAGC 356
Query 374 GCTAGGCGGCAGACAAAATCCAACAAAAAGGTTACTGAGCCACCGCCAAAGCCGTTGAAC 433
|||||||||||| |||||||||||||| | || |||||||||||||||||| ||||||
Sbjct 357 ATTAGGCGGCAGACCAAATCCAACAAAAAAGCTAATGAGCCACCGCCAAAGCCATTGAAC 416
Query 434 TTCGATTTTCTGAATGTGCCGGAGAAGGTTACTTGGACTGGGATAAACGGTTCAGAAGAA 493
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 417 TTTGATTTTCTGAATGTGCCGGAGAAGGTTACTTGGACTGGTATAAACGGTTCAGAAGAA 476
Query 494 GCTTGGTTGCCTTTCATTGGGGACTACAAGATTCAAGAATCTGTCAGCCAAGATTGGGAC 553
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 477 GCTTGGTTGCCTTTCATTGGGGACTACAAGATTCAAGAATCCGTCAGCCAAGATTGGGGC 536
Query 554 AGAGTATTCACTCTTGTCACCTCCCAAAACGCTGGAAAAACGATGTTCTAGAAGATTGCT 613
|||| ||||||||| |||||| |||||||||| |||| ||||||||| || |||||||||
Sbjct 537 AGAGCATTCACTCTAGTCACCACCCAAAACGCCGGAACAACGATGTTTTAAAAGATTGCT 596
Query 614 GCAGAAACTCACA--AAT-TGTAATAACACGCGCTGCTAGATTATCATATCTACTTAGTA 670
|||| |||||||| || ||||||||||| || ||||||| |||||||||||||||||
Sbjct 597 GCAGCAACTCACATCAAAATGTAATAACACAAGCCGCTAGATAATCATATCTACTTAGTA 656
Query 671 TTTACTGATCGTTGGTTGGAATGCAGGTTAATTTTTTAGTAGTGATAGTTTTAGTAACAC 730
|| ||||||| ||||||||||||||||||||||| ||| |||||||||| ||||||||
Sbjct 657 TTGACTGATCTTTGGTTGGAATGCAGGTTAATTT---AGTTGTGATAGTTT-AGTAACAC 712
Query 731 TTTGATTTGAGTTGTAATGTACTTTCTTAA-CATTTTCTTAGATAATTTGAAGGCAATGT 789
|| |||||||||||||| ||| || |||| | ||||||||| |||||||||||||||||
Sbjct 713 TTCAATTTGAGTTGTAATCTACATT-TTAAACGTTTTCTTAGGTAATTTGAAGGCAATGT 771
Query 790 ATGTCTATATTATTGCCTTTGAGAGAA-TCCGATAGTAACAAAGTTATGAAATCTAAAGT 848
||||| |||||||||||||||||| || |||| |||||||||||||||||||||||||||
Sbjct 772 ATGTCAATATTATTGCCTTTGAGA-AACTCCGTTAGTAACAAAGTTATGAAATCTAAAGT 830
Query 849 TCGATG 854
||||||
Sbjct 831 TCGATG 836
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32023250280
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5