BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G46590.2
Length=2319
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485029 jgi|Araly1|485029|fgenesh2_kg.5__1021__AT3G46590.3 2832 0.0
Ahg496070 jgi|Araly1|496070|fgenesh2_kg.8__1886__AT5G59430.4 676 0.0
> Ahg485029 jgi|Araly1|485029|fgenesh2_kg.5__1021__AT3G46590.3
Length=2177
Score = 2832 bits (1533), Expect = 0.0
Identities = 1858/2007 (93%), Gaps = 54/2007 (3%)
Strand=Plus/Plus
Query 279 TATTGTCTTGGAACTGAAGATTCATC---------GAAAGATTGGTGAGTTTTATTCGCT 329
|||||||||||||||||||||||||| |||||||| |||||||| |||| |
Sbjct 198 TATTGTCTTGGAACTGAAGATTCATCGAAAGGTGAGAAAGATTCGTGAGTTTCATTCATT 257
Query 330 GCTTATCGCTTGTGGCAATCACATCATCTGTGTTATGCATCCAAGTAATGGTGTCACATA 389
|||| |||| ||||| |||||||| || ||||||||||||||||||||||||||| ||||
Sbjct 258 GCTTCTCGCGTGTGGTAATCACATAAT-TGTGTTATGCATCCAAGTAATGGTGTCGCATA 316
Query 390 AAGTCTTAGAATTTGGAGATGATGGTTACAAATTACCTGCTCAAGCTCGAGCTCCGAGAT 449
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 317 AAGTCTTAGAATTTGGAGATGATGGTTACAAATTGCCTGCTCAAGCTCGAGCTCCGAGAT 376
Query 450 CACTCCGGAAGAAGCGCATTTACGAAAAGAAGATACCAGGAGATGATAAGATGTGCGCGA 509
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 377 CAGTCCGGAAGAAGCGCATTTACGAAAAGAAGATACCAGGAGATGATAAGATGTGCGCAA 436
Query 510 TTGACTTATTGGCCACCGTAGCTGGAAGCTTGCTTCTCGAGAGCAAAAGTCCGGTAAA-- 567
|||||||||||||||||||||||||||| ||||| ||||||||| ||||| |||||||
Sbjct 437 TTGACTTATTGGCCACCGTAGCTGGAAGTTTGCTACTCGAGAGCGAAAGTTCGGTAAATG 496
Query 568 CGCGTGT-CTAGTTGTACAAAATACTGTAAAGAATGAATACCCGGCTGATGAAAACCCCG 626
|| |||| ||||||||||||||||||||||||| |||| ||||||||| ||||||||||
Sbjct 497 CGTGTGTAGTAGTTGTACAAAATACTGTAAAGAAGGAATTCCCGGCTGAAGAAAACCCCG 556
Query 627 TAAAGGCGGTT-CCTTATTCGGAATCCCCGAGCCTATTTGACAATGGCAAGTGTGGATTT 685
||||||| ||| |||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 557 TAAAGGC-GTTACCTTATTCGGAATCCCCGAGGCTATTTGACAATGGCCAGTGTGGATTT 615
Query 686 AGCTCTGTGATAACAAATCCTAATCACTTGTTGGTAGGTGACAAAGTAGGAAAGGAGGTG 745
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 616 AGCTCTGTGATAACAAATCCTAATCACTTGTTGGTAGGTGACAAAGTAGAAAAGGAGGTG 675
Query 746 GAGGGTTTTAGTAGTTTGGGTGTGAGTGGTGATGTAAAGCCTGATGTTGTAGCTAGTATA 805
||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 676 CAGGGTTTTAGTAGCTTGGGTGTGAATGGTGATGTAAAGCCTGATATTGTAGCTAGTATA 735
Query 806 GGTAGTAACAGTAGTACCGAGGTGGGAGCATGTGGGAACGGTAGTCCCAACGAG-TCTCG 864
||||||||||||||||||||||| |||||||||||||||||||||||||| | | |||||
Sbjct 736 GGTAGTAACAGTAGTACCGAGGTCGGAGCATGTGGGAACGGTAGTCCCAATG-GTTCTCG 794
Query 865 GGATGATGTAAATTTGTTTAGTAGAAATGATGATGATGAAAACTTTTC-GGGTTACATTC 923
||||||||||||||| ||||||||||||||||||||||||||||| || ||| |||||||
Sbjct 795 GGATGATGTAAATTTATTTAGTAGAAATGATGATGATGAAAACTTCTCTGGG-TACATTC 853
Query 924 GAACTCGTATGACTAGGCCTGTGCCTCGTATTGGAGACAGAAGAATTAGGAAGATATTGG 983
| ||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 854 GCCCTCGTATGAATAGGCCTGTGCCTCGAATTGGAGACAGAAGAATCAGGAAGATATTGG 913
Query 984 CATCTAGACATTGGAAAGGAGGTTCGAAGAACAACACAGATGCAAAGCCATGGTATTGCT 1043
|||||||||||||| || | | | |||||||||||||||||||||||
Sbjct 914 CATCTAGACATTGG-AA--A-----G--G--------AGATGCAAAGCCATGGTATTGCT 955
Query 1044 CAAAGAGGAGTTATTACTTGCACCATCATCAGAGGAGTTATCCCATCAAGAAAAGGAAAT 1103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 CAAAGAGGAGTTATTACTTGCACCATCATCAGAGGAGTTATCCCATCAAGAAAAGGAAAT 1015
Query 1104 ACTTTGACAGTGTTTACGACTCGAACTCTGATGATTACCGTTTGCAAGGAAAGACTCATA 1163
|||||||||| ||| ||| |||||||||||||||||||||||||||||||| || | ||
Sbjct 1016 ACTTTGACAGCATTTCCGATTCGAACTCTGATGATTACCGTTTGCAAGGAAAAACACGTA 1075
Query 1164 AAGGAAGCAGAACAATATCTTCCATGAAAAGTCGAAATGCGTCCTTTGTGTCAAGGGATC 1223
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1076 AAGGAAGCAGAACAATATCTTCCATGAAAAGTCGAAATGCTTCCTTTGTGTCAAGGGACC 1135
Query 1224 ATCATGTGAAGCTGCGGATCAAGTCTTTTAGGGTGCCTGAGCTTTTCGTAGAGATTCCAG 1283
||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1136 ATCATGTGAGGCTGCGGATCAAGTCTTTCAGGGTGCCTGAGCTTTTTATAGAGATTCCAG 1195
Query 1284 AAACTGCTACTGTTGGCTCCTTGAAGCGGATGGTGATGGAAGCAGTGACCACCATACTGG 1343
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1196 AAACTGCTACTGTTGGCTCCTTGAAGCGGATGGTGATGGAAGCAGTGACTACCATACTGG 1255
Query 1344 GTGATGGACTTCGAGTCGGGCTGATGGTTCAAGGAAAGAAAGTCCGAGATGATGGCAAAA 1403
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1256 GTGATGGACTCCGAGTCGGGCTGATGGTTCAAGGAAAGAAAGTCCGAGATGATAGCAAAA 1315
Query 1404 CTCTTCTTCAGACTGGGATCTCTGAGGAGAACAACCACTTGGATTCTCTTGGTTTCAGCC 1463
||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||
Sbjct 1316 CTCTTCTTCAGACTGGGATTTCTGAGGAGAACAACCACTTGGATTCTCTGGGTTTCTGCC 1375
Query 1464 TTGAACCTAGCTTAGAGACCACCCCTCAACCACTGTTATCCAGTTATCTGTCAGATCATG 1523
|||| || |||||||| || ||||||||||| |||| |||||||||||||||||| ||||
Sbjct 1376 TTGAGCCCAGCTTAGAAACTACCCCTCAACCGCTGTCATCCAGTTATCTGTCAGAGCATG 1435
Query 1524 CCTGTGATGATGTGACGTTATGCCACGACAATGCGTTGGATTCTAGTCATGAGCCAG-A- 1581
| ||||||||| |||| ||||||||||||||||| ||||||||||||||| |||||| |
Sbjct 1436 CATGTGATGATTTGACATTATGCCACGACAATGCCTTGGATTCTAGTCATCAGCCAGCAG 1495
Query 1582 -ACCATCCCCAGCTGACTCATTTGGGAAACTAGGCACAA-GTGATCATTCTAGAGCTTTG 1639
|||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||
Sbjct 1496 CACCATCCCCAGCTGACTCATTTGGAAAACTAGGCACAACG-GATCATTCTAGAGCTTTG 1554
Query 1640 ATTCCTGTTGCCTCAGCAGCAATGCTGGCTCCTCGGCCTCCTAACCGTAAGTTTAAAAGG 1699
|||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1555 ATTCCTGTTGTGTCAGCAGCAATGTTGGCTCCTCGGCCTCCTAACCGTAAGTTTAAAAGG 1614
Query 1700 ACTGAGCAGCAGCTAGCTGCACAACGCAGAATTCGTCGACCTTTCTCAGTTACTGAAGTA 1759
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1615 ACTGAGCAGCAGCTAGCTGCACAGCGCAGAATTCGTCGACCTTTCTCAGTTACTGAAGTA 1674
Query 1760 GAAGCACTGGTCCAAGCCGTTGAGAAACTCGGAACCGGAAGGTGGAGAGATGTGAAGGTT 1819
|||||||||||||||||||||||| | || |||||||||||||||||||| || ||||||
Sbjct 1675 GAAGCACTGGTCCAAGCCGTTGAGCATCTTGGAACCGGAAGGTGGAGAGACGTTAAGGTT 1734
Query 1820 CGTGCTTTCGAGGACGCAGACCATCGTACCTATGTTGATCTCAAGGATAAGTGGAAGACG 1879
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1735 CGTGCTTTTGAGGACGCAGACCACCGTACCTATGTTGATCTCAAGGATAAGTGGAAGACG 1794
Query 1880 CTGGTCCACACGGCAAGGATATCTCCACAACAGCGGAGAGGAGAGCCGGTGCCACAGGAA 1939
|| |||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||
Sbjct 1795 CTAGTCCACACGGCAAGGATATCGCCACAGCAGCGGAGAGGAGAGCCCGTGCCACAGGAA 1854
Query 1940 CTTCTGGACCGTGTTTTGAAGGCACACGCTTACTGGTCACAACACCTAATGCATCAACTG 1999
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1855 CTTCTGGACCGTGTTCTGAAGGCACACGCTTACTGGTCACAACACCTAATGCATCAACTG 1914
Query 2000 CAGACTGAGCCACCATCCACTCAGGTAGAGGCTCTCTAATCTGAACAGGTTCTTG--GT- 2056
||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||
Sbjct 1915 CAGACTGAGCCACCATCTTCTCAGGTAGAGGCTCT--AATCTGAACAGGTTCTTCTTGTT 1972
Query 2057 CTAAAGAACCTTTGTGTATTATTATGATGATCCATATTGTAAGATTCTGACATAGTTGAA 2116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1973 CTAAAGAACCTTTGTGTATTATTATGATGATCCATATTGTAAGATTCTGACATAGTTGAA 2032
Query 2117 GATCTGGTCTCAGTTCTTCTTTGttttttttt-ttCTTTCTTTCAAATGTAAAGTTTTAT 2175
||| ||||||||||||||||| |||||||||| |||| |||||||| |||||||||||||
Sbjct 2033 GATATGGTCTCAGTTCTTCTT-GTTTTTTTTTCTTCTATCTTTCAAGTGTAAAGTTTTAT 2091
Query 2176 AATTGGAAATAAGGTTGGGTTTTTT----CTAACAATGTAAAGGATTTGTTGTAAATCTT 2231
|||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 2092 AATTGGAA-TAAGGTTGTGTTTTTTTTTTCTAACAATGTAAAGGATTTGTTGTAAATCTT 2150
Query 2232 TGGTGACATTTTTATTCTGTCTATATG 2258
|| | ||||||||||||| ||||||||
Sbjct 2151 TGATTACATTTTTATTCTCTCTATATG 2177
Score = 56.5 bits (30), Expect = 8e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 217 TGATTCCTTCGTCTCCGATCTCTCATTTTT 246
||||||||||||||||||||||||||||||
Sbjct 169 TGATTCCTTCGTCTCCGATCTCTCATTTTT 198
> Ahg496070 jgi|Araly1|496070|fgenesh2_kg.8__1886__AT5G59430.4
Length=2340
Score = 676 bits (366), Expect = 0.0
Identities = 983/1258 (78%), Gaps = 133/1258 (11%)
Strand=Plus/Plus
Query 785 CCTGATGTTGTAGCTAGTATAGGTAGTAACAGTAGTACCGAGGTGGGAGC-ATGTGGGAA 843
||| ||||||||| |||| ||||||||| ||||| ||||| ||| | | || ||||||
Sbjct 844 CCTAATGTTGTAGTTAGTTTAGGTAGTAGTAGTAGAACCGAAGTGCCATCAAT-TGGGAA 902
Query 844 CGGTAG--TCCCAACG-AGTCTCGGGATGATGTAAATTTGTTTAGTAGAAATGATGATGA 900
|| | ||||| | | | ||||||||||||||||||||||||||| | ||||||||
Sbjct 903 TTGT-GCTTCCCATGGCA-T-TCGGGATGATGTAAATTTGTTTAGTAG--A-GATGATGA 956
Query 901 TGAAAACTTTTC-GGGTTACATTCGA-ACTC--G-T-------A-TGA-CTAGGCCTGTG 946
|||||||||||| ||| ||||||| | | | | | | | | ||||| |||||
Sbjct 957 TGAAAACTTTTCTGGG-TACATTC-ACCCGCGTGTTACAAAAAATTCACCTAGGACTGTG 1014
Query 947 CCTCGTATTGGAGACAGAAGAATTAGGAAGATATTGGCATCTAGACATTGGAAAGGAGGT 1006
|| |||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1015 CCGCGTATTGGGGACAGAAGAATCAGGAAGATATTGGCTTCTAGACATTGGAAAGGAGGT 1074
Query 1007 TCGAAGAACAACACAGATGC-AAAGCCATGGTATTGCTCAAAGAGGAGTTATTACTTGCA 1065
|| ||| || | ||||| | ||| |||||| | | | | | ||||||||||||
Sbjct 1075 TC-AAG-AC-ATGCAGATACGAAA-CCATGG-A--G-----A-A--A-TTATTACTTGCA 1118
Query 1066 CCATCATCAGAGGAGTTATCCCATCAAGAAAAGGAAATACTTTGA-CAGTGTTTAC-GAC 1123
| ||||||||||| ||||| ||||||||||||||| ||||||| || | | | ||
Sbjct 1119 -C--CATCAGAGGAGCTATCCTATCAAGAAAAGGAAAAACTTTGACCA-CATAT-CTGAT 1173
Query 1124 TCGAACT-CTGATGATTACCGTTTGCAAGGA--AAGACT-CATAAAGGAAGCAGAACAAT 1179
|| || | ||||||| |||||||||| | | |||| | |||| ||| ||||| | ||
Sbjct 1174 TC-AATTACTGATGACTACCGTTTGC--GCACTAAGA-TGCATAGAGGCAGCAG-A-AA- 1226
Query 1180 ATCTTCCATGAAAAGTCGAAATGCGTCCTTTGTGTCAAGGGA-TCATCATGTGAAGCTGC 1238
| | | ||| | ||| ||||||||| |||| | || |||||||| || |
Sbjct 1227 A-GGT-C-----AAG--G---TGCATCCTTTGTGGCAAGCAACTC-CCATGTGAAACTAC 1273
Query 1239 GGATCAAGTCTTTTAGGGTGCCTGAGCTTTTCGTAGAGATTCCAGAAACTGCTACTGTTG 1298
|||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1274 GGATCAAGTCGTTCAGGGTGCCTGAGCTTTTCATAGAGATTCCAGAAACTGCTACTGTTG 1333
Query 1299 GCTCCTTGAAGCGGATGGTGATGGAAGCAGTGACCACCATACTGGGTGATGGACTTCGAG 1358
||||||||||| | ||||||||||||||||||| ||| ||||| ||||||||| ||||
Sbjct 1334 GCTCCTTGAAGAGAATGGTGATGGAAGCAGTGAGCACTTTACTGAGTGATGGACACCGAG 1393
Query 1359 TCGGGCTGATGGTTCAAGGAAAGAAAGTCCGAGATGATGGCAAAACTCTTCTTCAGACTG 1418
| || ||||||||||| || ||||||||||| || ||| |||||| |||| ||||||||
Sbjct 1394 TTGGTCTGATGGTTCATGGGAAGAAAGTCCGTGACGATAACAAAACCCTTCATCAGACTG 1453
Query 1419 GGATCTCTGAGGAGAACAACCACTTGGATTCTCTTGGTTTCAGCCTTGAACCTAGCTTAG 1478
|||||||| |||| |||| ||||||||| ||||||| ||| ||||||||||| ||| |
Sbjct 1454 GGATCTCTCAGGATAACACCCACTTGGACTCTCTTGATTTTAGCCTTGAACCCAGC-T-C 1511
Query 1479 AGACCACCCCTCAACCACTGTTATCCAGTTATCTGTC-AGATCATGC--CT-GTGATGAT 1534
||| | |||| | ||||||| | ||| | | ||| || ||||| || | || | |
Sbjct 1512 AGA-TATGCCTC-A--ACTGTTAACTAGTCACCCGTCGGGA-CATGCTTCTGGGGA-GCT 1565
Query 1535 G-TGA-C-GT-T----A--TGC---CA-CGACAATGCGTTGGATTCT-A--GTCATGAGC 1577
| | | | || | | ||| || ||||||| |||||| ||| | |||||| |
Sbjct 1566 GCT-ACCTGTGTGCCAAGCTGCTAACATGGACAATGTGTTGGAATCTGACCATCATGA-C 1623
Query 1578 -CAGAACCATCCCCAGCTGACTCATTTGGGAA-ACT-A-G-GCACAAGTGATCATTCTAG 1632
||| || || |||| |||||||||| || || | | | | | || | || ||||||
Sbjct 1624 TCAGCACTATTCCCATCTGACTCATTAGGCAAGAATAACGTG-AC-A--GAAGATTCTAA 1679
Query 1633 AGCTTTGATTCCTGTTGC-CTCAGCAGCAATGCTGGCTCCTCGGCCTCCTAACCGT-AAG 1690
|||| |||||||||| || |||| | | ||| ||||| |||| || ||| | | ||
Sbjct 1680 AGCTATGATTCCTGTGGCGCTCA-CTG-AAT--TGGCTTCTCGACCACCTTGTCTTAAAC 1735
Query 1691 TTTA-A-AAG-G-ACTG-AGCAGCAGCTA-GCTGCACAACGCAGAATTCGTCGACCTTTC 1744
|| | | ||| | || | ||||||||| | ||||||||||||||||||||||||||||||
Sbjct 1736 TTAAGAGAAGTGAACAGCAGCAGCAGC-AGGCTGCACAACGCAGAATTCGTCGACCTTTC 1794
Query 1745 TCAGTTACTGAAGTAGAAGCACTGGTCCAAGCCGTTGAGAAACTCGGAACCGGAAGGTGG 1804
|||||| |||||||||||||||| || ||||| |||||||||||||| || |||||||||
Sbjct 1795 TCAGTTGCTGAAGTAGAAGCACTTGTTCAAGCAGTTGAGAAACTCGGTACTGGAAGGTGG 1854
Query 1805 AGAGATGTGAAGGTTCGTGCTTTCGAGGACGCAGACCATCGTACCTATGTTGATCTCAAG 1864
||||||| ||| || ||||||||||||| |||||||| || || || || |||||||||
Sbjct 1855 CGAGATGTTAAGCTTTGTGCTTTCGAGGATGCAGACCACCGCACTTACGTCGATCTCAAG 1914
Query 1865 GATAAGTGGAAGACGCTGGTCCACACGGC-AAGGATATCTCCACAACAGCGGAGAGGAGA 1923
||||| ||||| ||||||||||||||||| ||| ||||||||||||||| ||||||||||
Sbjct 1915 GATAAATGGAAAACGCTGGTCCACACGGCTAAG-ATATCTCCACAACAGAGGAGAGGAGA 1973
Query 1924 GCCGGTGCCACAGGAACTTCTGGACCGTGTTTTGAAGGCACACG-CTTACTGGTCACA 1980
||| ||||| ||||||||||| |||| || ||||| || || | || ||||| ||||
Sbjct 1974 GCCAGTGCCGCAGGAACTTCTAAACCGAGTCTTGAAAGCTCATGGCT-ACTGGACACA 2030
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87340931785
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5