BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G46610.1
Length=2471
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488271 jgi|Araly1|488271|fgenesh2_kg.6__1405__AT3G46610.1 2734 0.0
> Ahg488271 jgi|Araly1|488271|fgenesh2_kg.6__1405__AT3G46610.1
Length=2177
Score = 2734 bits (1480), Expect = 0.0
Identities = 1800/1950 (92%), Gaps = 40/1950 (2%)
Strand=Plus/Plus
Query 443 GAAAGTTCTGTTTTTGTGTGAGCCAAAGAGAAGTTTGTTGGGATCATCGTTTGGGGTAGG 502
||||||||||||| |||||||||||||||||| ||||| |||||||||| | ||||| ||
Sbjct 210 GAAAGTTCTGTTTCTGTGTGAGCCAAAGAGAAATTTGTCGGGATCATCGGTCGGGGTGGG 269
Query 503 ATGGGCCACTGAGCAACGAGAGCTCGAGCTCGGGGAAGAAGAAGTTTCCACGGAAGATTT 562
||||||||| ||||||| | | |||||| ||| ||||||||||||||||||||||
Sbjct 270 ATGGGCCACGGAGCAAC--G-G---GAGCTC-GGG--GAAGAAGTTTCCACGGAAGATTC 320
Query 563 AAG-T-T---C--A--GCAAATGGAGGAGAAAAGAA-CAATTTAAGAGTTGATGTTAGAG 612
||| | | | | | ||||||||||||||| || ||||| |||||||||||||||||
Sbjct 321 AAGTTATCCACAAACTGTAAATGGAGGAGAAAA-AACCAATTCAAGAGTTGATGTTAGAG 379
Query 613 AATTAGCGTTTAGTTTACGAGCTGCTAAGACAGCTGATGATGTGGATGCTGTTCTCAAGG 672
|||| |||| |||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 380 AATTGGCGTATAGTTTACGAGCTGCTAAGACAGCAGATGATGTGGATGTTGTTCTCAAGG 439
Query 673 ACAAGGGAGAGTTGCCTCTGCAAGTCTTTTGTGCTATGATAAAGGGTTTTGGCAAGGACA 732
| |||||||| || ||||| ||||||| |||||||||||| | |||||||||||||||||
Sbjct 440 AGAAGGGAGAATTACCTCTACAAGTCTATTGTGCTATGATTAGGGGTTTTGGCAAGGACA 499
Query 733 AGAGATTGAAGCCTGCGGTAGCTGTAGTAGATTGGCTTAAGAGGAAGAAGAGTGAATCAG 792
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 500 AGAGACTGAAGCCTGCGATAGCTGTAGTAGATTGGCTTAAGAGGAAGAAGAGTGAATCAG 559
Query 793 GCGGTGTCATAGGTCCAAATCTTTTTATATATAACAGCCTTTTGGGTGCTATG--AGAG- 849
||||||||||||||||||| ||||||||||||||||||||||||||||| ||| | ||
Sbjct 560 GCGGTGTCATAGGTCCAAACCTTTTTATATATAACAGCCTTTTGGGTGCGATGAAACAGT 619
Query 850 -G-GT-TTGGGGAAGCAGAGAAGATACTGAAAGATATGGAGGAAGAAGGGATTGTTCCAA 906
| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 620 CGAGTGTTGGGGAAGCAGAGAAGATACTGAGTGATATGGAGGAAGAAGGGATTGTTCCAA 679
Query 907 ACATTGTTACTTACAATACTTTGATGGTTATTTACATGGAGGAAGGTGAGTTTCTCAAGG 966
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 680 ACATTGTTACTTACAATACTTTGATGGTTATTTACATGGAGGAAGGGGAGTTTCACAAGG 739
Query 967 CTCTTGGGATTCTTGATTTAACCAAGGAAAAGGGTTTTGAGCCTAACCCGATTACATATT 1026
| |||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||
Sbjct 740 CCCTTGGGATTCTTGATTTAGTCAAGGAAAAAGGTTTTGAGCCTAACCCGATAACATATT 799
Query 1027 CAACGGCTTTGCTTGTTTACAGAAGAATGGAAGACGGTATGGGAGCTTTAGAGTTCTTTG 1086
|||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||
Sbjct 800 CAACGGCTTTGCTTGTCTACAGAAGAATGGAAGACGGTATGGGAGCTCTCGAGTTCTTTG 859
Query 1087 TTGAATTGAGAGAGAAATACGCAAAGAGGGAAATAGGGAATGATGTTGGTTACGATTGGG 1146
|||||||||||||||||||| |||||||||||||||||||||| | | |||||||||||
Sbjct 860 TTGAATTGAGAGAGAAATACTCAAAGAGGGAAATAGGGAATGACGCCGATTACGATTGGG 919
Query 1147 AATTTGAGTTTGTTAAGCTTGAGAACTTT-ATTGGTAGAATATGCTACCAAGTGATGAGG 1205
||||||||||||||||||| || || ||| ||||||||||||||||||||||||||||||
Sbjct 920 AATTTGAGTTTGTTAAGCTCGA-AAATTTCATTGGTAGAATATGCTACCAAGTGATGAGG 978
Query 1206 CGGTGGTTGGTGAAAGATGATAATTGGACTACTAGAGTGTTGAAGCTTTTGAATGCAATG 1265
|||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 979 CGGTGGCTGGTGAAAGATGAAAACTGGACTACTAGAGTGTTGAAGCTTTTGAATGCAATG 1038
Query 1266 GACAGTGCAGGG-GTTAGACCGAGTAGGGAAGAGCACGAGAGGCTTATATGGGCATGTAC 1324
|||| ||| ||| ||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 1039 GACAATGC-GGGTCTTAAACCGAGTAGGGAAGAGCATGAGAGGCTTATATGGGCATGTAC 1097
Query 1325 TCGTGAAGAGCATTATATTGTTGGTAAAGAGTTGTATAAAAGAATCAGAGAGAGGTTTTC 1384
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1098 GCGTGAAGAACATTATATTGTTGGTAAAGAGTTGTATAAAAGAATCAGAGAGAGGTTTCC 1157
Query 1385 TGAGATAAGTCTGTCTGTTTGCAACCATTTGATTTGGCTGATGGGTAAGGCTAAGAAATG 1444
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1158 TGAGATAAGTCTATCTGTCTGCAACCATTTGATTTGGCTGATGGGTAAGGCTAAGAAATG 1217
Query 1445 GTGGGCAGCGTTGGAGATCTACGAGGATCTTCTTGACGAAGGACCTGAACCTAACAATTT 1504
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1218 GTGGGCAGCGTTAGAGATCTACGAGGATCTTCTTGACGAAGGACCTGAACCGAACAATTT 1277
Query 1505 GTCTTATGAGTTAGTGGTCTCTCATTTCAATATCTTGCTGAGTGCAGCTAGCAAGAGAGG 1564
|||||| || ||||||||||||||||||||||| ||||||||||||||||| | ||||||
Sbjct 1278 GTCTTACGAATTAGTGGTCTCTCATTTCAATATTTTGCTGAGTGCAGCTAGTAGGAGAGG 1337
Query 1565 GATATGGAGATGGGGAGTTAGGTTACTTAACAAAATGGAAGATAAAGGATTGAAACCGCA 1624
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1338 GATATGGAGATGGGGAGTTAGGCTACTTAACAAAATGGAAGATAAAGGATTGAAACCGCA 1397
Query 1625 GAGGAGACATTGGAACGCGGTTCTTGTAGCATGTTCAAAAGCCTCTGAGACCACAGCTGC 1684
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1398 GAGCAGACATTGGAACGCGGTTCTTGTAGCATGTTCAAAAGCCTCTGAGACCACAGCTGC 1457
Query 1685 GATCCAAATCTTTAAAGCAATGGTTGACAATGGTGAAAAGCCAACGGTCATCTCATACGG 1744
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1458 GATCCAAATCTTTAAAGCAATGGTTGACAATGGTGAAAAGCCAACGGTAATCTCATACGG 1517
Query 1745 TGCACTACTCAGTGCTCTTGAGAAAGGGAAGCTATATGATGAGGCGTTTCGGGTTTGGAA 1804
||| || || ||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 1518 TGCGCTGCTTAGTGCTCTTGAGAAAGGGAAGTTATATGATGAGGCGTTTCGAGTTTGGAA 1577
Query 1805 CCATATGATTAAGGTAGGGATTGAGCCAAATCTTTACGCGTACACAACAATGGCTTCAGT 1864
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1578 CCATATGATTAAGGTAGGTATTGAGCCAAATCTTTACGCGTACACGACAATGGCTTCAGT 1637
Query 1865 TTTGACAGGACAGCAAAAGTTCAATCTTTTGGATACCCTTCTCAAGGAAATGGCTTCAAA 1924
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1638 TTTGACAGGACAGCAAAAATTCAATCTTTTGGATACCCTTCTCAAGGAAATGGCATCAAA 1697
Query 1925 GGGTATTGAACCGAGCGTTGTGACTTTCAACGCGGTTATAAGTGGTTGCGCGAGGAACGG 1984
|||||||| |||||||||||||||| ||| ||||||||||| |||||||||||||||||
Sbjct 1698 AGGTATTGAGCCGAGCGTTGTGACTTACAATGCGGTTATAAGCGGTTGCGCGAGGAACGG 1757
Query 1985 GTTAAGTGGTGTGGCTTATGAGTGGTTTCATAGAATGAAAAGTGAGAATGTTGAGCCTAA 2044
||||||||| |||||||| ||||||||||| ||||||| | ||||||| || || |||||
Sbjct 1758 GTTAAGTGGGGTGGCTTACGAGTGGTTTCACAGAATGAGAGGTGAGAAGGTCGAACCTAA 1817
Query 2045 CGAGATAACTTACGAGATGTTGATTGAGGCTCTTGCAAATGATGCAAAGCCAAGGCTTGC 2104
|||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1818 TGAGATAACCTACGAGATGTTGATCGAGGCTCTTGCGAATGATGCAAAGCCAAGGCTTGC 1877
Query 2105 TTATGAGTTACATGTGAAGGCTCAAAACGAAGGGCTTAAA-CTCTCTTCTAAGCCATATG 2163
||||||||||||| | |||||||||||||||||||| ||| ||||||||||||||||| |
Sbjct 1878 TTATGAGTTACATTTAAAGGCTCAAAACGAAGGGCT-AAAGCTCTCTTCTAAGCCATACG 1936
Query 2164 ATGCGGTTGTTAAATCAGCTGAGACTTATGGAGCCACCATTGATCTTAATCTTTTGGGTC 2223
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1937 ACGCGGTTGTTAAATCAGCTGAGACTTATGGAGCCACCATTGATCTTAATCTGTTGGGTC 1996
Query 2224 CTCGACCAGACAAAAAGAATAGACCTTAGTCTGACGAAAACACATTGT-A-C-AAGGTTA 2280
|||||||| ||||| |||| ||| |||||||||| | || | ||| | | || ||||
Sbjct 1997 CTCGACCACACAAAGAGAAGAGAGCTTAGTCTGAT-ACAATA--TTGAGATCCAATGTTA 2053
Query 2281 CCGTGGGGTAAGGCGCATCCAAGGACCCTTAAAGGCAAGAAAATTGCCATTACAGGGAAG 2340
|||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 2054 CCGTGGGGTAAGGCACATCCAAGGACTCTTAAAGGCAAGAAAATTGCCATTGCAGGGAAG 2113
Query 2341 AAGAAAGTTTCCAAGTAATCA-CTTTCTTG 2369
||||||||||||||||||||| ||| ||||
Sbjct 2114 AAGAAAGTTTCCAAGTAATCATCTT-CTTG 2142
Score = 200 bits (108), Expect = 4e-50
Identities = 168/194 (87%), Gaps = 16/194 (8%)
Strand=Plus/Plus
Query 255 ATGCAAGCTTTAAGCATTTTGCCATTAAAGTCTGGTCTTTTAGTTGGATCAAGATTGGAA 314
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGCAAGCTTTAAGCATTTGGCCATTAAAGTCTGGTCTTTTAGTTGGATCGAGATTGGAA 60
Query 315 TTTGAGTTGGATTGTTCTTGTTTTGTAGTTAGCCCTAAGACTACTAGAAAGAGACTTTGC 374
|||||||||||||||||||||||||||||||| | |||| | |||||||||| | |||
Sbjct 61 TTTGAGTTGGATTGTTCTTGTTTTGTAGTTAGTCATAAG--T-CTAGAAAGAGGCATTG- 116
Query 375 TT-T-CTTGAACAGGCTTGCTTCGGTAGTAGTAGTAGTATCTCTAGCTTCATCTTCGTTT 432
|| | || ||||||| |||||| | | |||| | ||||||||||| ||||| ||||
Sbjct 117 TTCTGCT-GAACAGGGTTGCTT---T-G--GTAG-A--ATCTCTAGCTTGATCTTGGTTT 166
Query 433 CGAGTAACAGGAAA 446
||||||| ||||||
Sbjct 167 CGAGTAATAGGAAA 180
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93130649025
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5