BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G46613.1

Length=435
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg937372 jgi|Araly1|937372|scaffold_501563.1                        645    0.0  


> Ahg937372 jgi|Araly1|937372|scaffold_501563.1
Length=472

 Score =  645 bits (349),  Expect = 0.0
 Identities = 407/435 (94%), Gaps = 3/435 (1%)
 Strand=Plus/Plus

Query  1    ATGGATGTTGAAAAGCTATGGAATCATACAAAGAAAGATTCCATCTTTCAAACTACTCAT  60
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  21   ATGGATGTTGAAAAGCTATGGAATCATACAAAGAAAGATGCCATCTTTCAAACTACTCAT  80

Query  61   TTCTCTTCTTCTTCAAAACCTTTTTTCACAAGAAGCTTCTCAACAAAAACTTCATCTTCT  120
            |||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct  81   TTCTCTTCTTCTTCTAAACCCTTTTTCACAAGAAGCTTCTCCACAAAAACTTCATCTTCT  140

Query  121  CCATCATCCAAATCCCATTTCACTAGAAGCTTCTCAACAAAACCTTCGTCGTCTTCTAGT  180
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  141  CCTTCATCCAAATCCCATTTCACTAGAAGCTTCTCAACAAAACCTTCGTCGTCTTCTTGT  200

Query  181  TCTTCAGATCTCATTTTCAGACGGAGTTTCTCCGCAAAGCCTAAAACATCGAAGTCTTTG  240
            ||||| || | |||||||||||||||||||||| ||||||||||| | ||||||||||||
Sbjct  201  TCTTCCGAACCCATTTTCAGACGGAGTTTCTCCTCAAAGCCTAAAGCTTCGAAGTCTTTG  260

Query  241  CTTTTGTCTAGAAGCTGTTCCACGAAATCCTCAGCTGATTTATCTTCCAAGTCTTCTTCT  300
             |||||||||||||||||||||||||||| ||||||||||| || |||||||||||| ||
Sbjct  261  ATTTTGTCTAGAAGCTGTTCCACGAAATCTTCAGCTGATTTCTCCTCCAAGTCTTCT-CT  319

Query  301  CTATCTAGAATCTTGTCAAAGAAAGGAGCTTCCGTGACGGGAAAATGCTTCAAAGTAGCG  360
            ||  |||||| ||||||  ||||||||||||| ||||| ||||||||||||||||| || 
Sbjct  320  CT--CTAGAAGCTTGTCTCAGAAAGGAGCTTCGGTGACTGGAAAATGCTTCAAAGTCGCC  377

Query  361  AAGGAGCATAAGTCCCGCTTCTACATAATCAAACGCTGTGTTTTGATGCTCGTTTGCTGG  420
            |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  378  AAGGAGCAGAAGTCCCGCTTCTACATAATCAAACGCTGCGTTTTGATGCTCGTTTGCTGG  437

Query  421  CACAAACATTCTTGA  435
            |||||||||||||||
Sbjct  438  CACAAACATTCTTGA  452



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15681947079


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5