BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G46620.1
Length=1371
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485035 jgi|Araly1|485035|fgenesh2_kg.5__1027__AT3G46620.1 1973 0.0
Ahg496089 jgi|Araly1|496089|fgenesh2_kg.8__1905__AT5G59550.1 547 7e-155
> Ahg485035 jgi|Araly1|485035|fgenesh2_kg.5__1027__AT3G46620.1
Length=1354
Score = 1973 bits (1068), Expect = 0.0
Identities = 1280/1377 (93%), Gaps = 35/1377 (3%)
Strand=Plus/Plus
Query 1 AACTTCAGATCCTTTCACCAGCAACACAAGTTATTTTCAAAAGATGATGCCAAATTCTAG 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 AACTTCAGATCCTTTCACCAGCAACACAAGTT-TTTTCAAAAGATGATGCCAAATTCTAG 59
Query 61 ATCGGCGACAATAACTCCGACGACAGAATCAACCACCacaacaacaacaacaacaacGAC 120
||||||||||||| |||||||||||||||| | | | | || | ||||||||||||||
Sbjct 60 ATCGGCGACAATATCTCCGACGACAGAATC-A--A-C-C-AC--C-ACAACAACAACGAC 110
Query 121 TCTAACGACGTCGTATTGGTGTTACAGTTGTACACGATTCATCAGCGTTTGGGAAGATCA 180
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 111 TCCGGCGACGTCGTATTGGTGTTACAGTTGTACACGATTCATCAGCGTTTGGGATGATCA 170
Query 181 AGACGCAAACGCTGGAGTCTTATGTCCTTATTGCAACGGTGGATTCATCGAAGAGATTGA 240
|||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||
Sbjct 171 AGACGCAAACGCTGGAGTCTTATGTCCTTATTGCGACGGAGGTTTCATCGAAGAGATTGA 230
Query 241 AGATTCTTCTAATTC-CACCGTCGCGGCGATTCCGGCTT-CGACTCCGGAAGTTAGATCG 298
||||||||||||||| | ||| |||||||||||||| || || |||||||||||||||||
Sbjct 231 AGATTCTTCTAATTCTC-CCGCCGCGGCGATTCCGG-TTACGGCTCCGGAAGTTAGATCG 288
Query 299 GTTGAGGAAACACATAGATCTATAATTAGACGTCGTAGATCTAATCGCCGGACGTCCTTT 358
||||| || | ||||||||| |||||||||| || |||||| ||| || || || |||
Sbjct 289 GTTGAAGATATTCATAGATCTGTAATTAGACGGCGGAGATCTGGTCGTCGTACATCGTTT 348
Query 359 AATCCGGTAATCGTCTTACACGGCGGAGGAGGAGGAGGAGCCGGTGAGAGAGTTGAGAAC 418
||||||||||||||||||||||| ||||||||||||||| || || ||||||||||||
Sbjct 349 AATCCGGTAATCGTCTTACACGGAGGAGGAGGAGGAGGA---GGAGATAGAGTTGAGAAC 405
Query 419 GAAGAAGGTGACGGAGCTACTAGAGAACGACGAGCTTATGAGTTTTATTACGATGATGGA 478
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 406 GAAGAAGGAGACGAAGCTACTAGAGAACGACGAGCTTATGAGTTTTATTACGATGATGGA 465
Query 479 TCTGGTTCAGGTCTAAGACCTCTTCCTGATTCTGTATCTGAGATCTTGATGGGATCTGGA 538
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 466 TCTGGTTCAGGTCTAAGACCTCTTCCTGATTCTGTATCTGAGATCTTAATGGGATCTGGA 525
Query 539 TTCGAACGGTTACTTGAACAATTGAGTCAGATCGAAGCGTCAGGTAACGGAATCGGTAGA 598
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 526 TTTGAACGATTACTTGAACAATTGAGTCAGATCGAAGCGTCAGGTAACGGAATCGGTAGA 585
Query 599 TCTGGGAATCCACCGGCGTCGAAATCAGCGATTGAATCTTTACCTAGAGTCGAAATCTCA 658
||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 586 TCTGGTAATCCACCGGCGTCGAAATCAGCGATTGAATCTTTACCTAGAATCGAGATCTCA 645
Query 659 GATTGTCATACGAAAGCAGAAGCTAATTGCGCCGTGTGTACGGAGGTTTTCGAAGCCGGA 718
|||||||| | |||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 646 GATTGTCACATGAAAGCGGAAGCGAATTGCGCCGTGTGTACGGAGGTTTTCGAAGCCGGA 705
Query 719 ATCGAAGGTCGTGAGATGCCGTGTAAACACATATTTCACGGTGATTGTATTGTTCCATGG 778
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 706 ATCGAAGGTCGTGAGATGCCGTGTAAACATATATTTCACGGCGATTGTATTGTTCCATGG 765
Query 779 CTTTCGATTCGGAATTCGTGTCCTGTGTGTAGATTTGAGTTACCTTCAGATCCAATCCAA 838
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 766 CTTTCGATTCGGAATTCGTGTCCTGTGTGTAGATTTGAATTACCTTCAGATCCAATTCAA 825
Query 839 CGGAGTAATGAAGAAGAACATGCCGTTGGGATGACGATTTGGAGATTACCTGGTGGTGGT 898
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 826 CGGAGTAATGAAGAAGAACATGCTGTTGGGATGACGATTTGGAGATTACCAGGTGGTGGA 885
Query 899 TTCGCTGTTGGTAGGTTTAACGCGGGAGTGAGAGAAGGTGAGAGGATATTGCCGGTGGTA 958
||||||||||| |||||||||||||| ||||||||||| |||||||| |||||||||||
Sbjct 886 TTCGCTGTTGGGAGGTTTAACGCGGGGGTGAGAGAAGGAGAGAGGATTTTGCCGGTGGTT 945
Query 959 TTGACGGAGATGGATGGTGGTGGACTTGGTAGTAATGAAGGACCGAGAAGGATATCTTGG 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 946 TTGACGGAGATGGATGGTGGTGGACTTGGTAGTAATGAAGGACCGAGAAGGATTTCTTGG 1005
Query 1019 GTTAGAGCTCATGAGACACCGGAGATGAGTAGGAATGGTGGTCGTTCTGGTAATGGTGGT 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1006 GTTAGAGCTCATGAGACACCGGAGATGAGTAGGAATGGTGGTCGTTCTGGTAATGGTGGT 1065
Query 1079 AGATTGAGAAGAGCTGTTCGTGGAATGGTTTCGTTTATGAGAAGAGTTAGACCAAGTCGT 1138
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 1066 AGATTGAGAAGAGCTGTTCGTGGAATGGTTTCGTTTATGAGAAGAGTGAGACCAAATCGT 1125
Query 1139 GGCTCTTCGAATTCGAAT--G--T-T-ATTGATTTGGATAGTGATGGTGAAACTAGAGTT 1192
||||||||||||||||| | | | |||||||||||||||||||||||||||||||||
Sbjct 1126 CGCTCTTCGAATTCGAATTCGAATCTTATTGATTTGGATAGTGATGGTGAAACTAGAGTT 1185
Query 1193 ATGAATCGATCAACTTCGTTGATCAGAAGATTTTTCTGATG-AAACTAG-GT-GAGAttt 1249
||||||||||||||||||||||||||||||||||||||||| ||||| | || |||||||
Sbjct 1186 ATGAATCGATCAACTTCGTTGATCAGAAGATTTTTCTGATGGAAACTGGAGTTGAGATTT 1245
Query 1250 ttttGTTTGTTGATTCAACAATGTATATATATTTATTTAGATGAA-CTTATTTGGTACCT 1308
|||||||||||||||||||||||| |||||| ||||| ||||||| || |||||| || |
Sbjct 1246 TTTTGTTTGTTGATTCAACAATGTGTATATAATTATTCAGATGAAACT-ATTTGGAACAT 1304
Query 1309 CTCTTGTTACATCAAATTTATGTGAAACAGaaaaaaaaTGTCAAATTCATTATTCTT 1365
|| |||||||||||||||||| || |||| ||||||||||||||||||||||
Sbjct 1305 CT-TTGTTACATCAAATTTAT-TG-----GAAACCAAATGTCAAATTCATTATTCTT 1354
> Ahg496089 jgi|Araly1|496089|fgenesh2_kg.8__1905__AT5G59550.1
Length=1367
Score = 547 bits (296), Expect = 7e-155
Identities = 834/1082 (77%), Gaps = 84/1082 (8%)
Strand=Plus/Plus
Query 110 acaacaacGACTCTAACGACGTCGTATTGGTGTTACAGTTGTACACGATTCATCAGCGTT 169
||||||||| | | ||| | |||||||||||||| || ||||| || ||| ||||||||
Sbjct 28 ACAACAACGCCGATCACGGCTTCGTATTGGTGTTATAGCTGTACGCGTTTCGTCAGCGTT 87
Query 170 TGGGAAGATCAA-G-AC-GCAAACG-C--TGGAGTC-TTATGTCCTTATTGCAACGGTGG 222
|||| |||||| | || || | || | ||| ||| | |||||| | ||| |||| ||
Sbjct 88 TGGGCTGATCAAGGCACAGCCACCGTCGGTGGCGTCGCT-TGTCCTCACTGCGACGGCGG 146
Query 223 ATTCATCGAAGAGATTGAA-GATTCTT-CTAATTC-C-ACCGTCGCGGCGATTCCGGCTT 278
|| |||||||||||| || ||||||| || | | |||| |||||||||||||
Sbjct 147 TTTTATCGAAGAGATT-AACGATTCTTCCTCCGCCGCTACCGAATTAGCGATTCCGGCTT 205
Query 279 CGACTCCGGAAGTTAGATCGGTTGAGGA-AACACATAGATCTATAATTAGACGTCGTAGA 337
| ||| ||||| |||||| || | | ||| | |||||| | |||||||| || |||
Sbjct 206 CTACT---GAAGTAAGATCGATTAATAACAAC-CGTAGATCCGTGATTAGACGCCGGAGA 261
Query 338 TCTAATCGCCGGACGTCCTTTAATCCGGTAATCGTCTTACACGGCGGAGGAGGAGGAGGA 397
|| ||| || |||| ||||||||||| |||| ||| | | | ||||||
Sbjct 262 TCCGGTCGTCGTCCGTCGTTTAATCCGGTCATCG---TACTC--C-----A--AGGAGGC 309
Query 398 GCCGGTGAGAGAGTTGA-GAACGAAGAAGGTGACGGA-GCTACTAGAGAACGACGAGCTT 455
||||| ||||||| || | | |||||| | || || || ||||||| ||||| ||||
Sbjct 310 GCCGGCGAGAGAGAAGATGGA-GAAGAA-G-GA--GATGCGGCTAGAGATCGACGCGCTT 364
Query 456 ATGAGTTTTATTACGATGATGGATCTGGTTCAGGTCTAAGACCTCTTCCTGATTCTGTAT 515
|||||||||||||||||| ||||| || || ||||| ||||| ||||| ||||||||||
Sbjct 365 TTGAGTTTTATTACGATGACGGATCCGGATCGGGTCTTAGACCGCTTCCGGATTCTGTAT 424
Query 516 CTGAGATCTTGATGGGATCTGGATTCGAACGGTTACTTGAACAATTGAGTCAGATCGAAG 575
||||||||||||||||||||||||| || |||||||| ||||| | || ||| ||||||
Sbjct 425 CTGAGATCTTGATGGGATCTGGATTTGAGCGGTTACTCGAACAGCTAAGCCAGTTCGAAG 484
Query 576 CGTCAGGTAAC-GGAATCGGTAGATCTGGGAATCCACCGGCGTCGAAATCAGCGATTGAA 634
|||| || || ||||||||||||||||| ||||| |||||||||||||| ||||||||
Sbjct 485 CGTC-GGCCACCGGAATCGGTAGATCTGGAAATCCTCCGGCGTCGAAATCGGCGATTGAG 543
Query 635 TCTTTACCTAGAGTCGAAATCTCAGATTGTCATACGAAAGCA--GAAG-CTAATTGCGCC 691
||||||||||||||||||||||| |||||||| | | ||| | || ||||||||||
Sbjct 544 TCTTTACCTAGAGTCGAAATCTCTGATTGTCA--C-ATAGCCTCGGAGGCTAATTGCGCT 600
Query 692 GTGTGTACGGAGGTTTTCGAAGCCGGA-ATCGAAGGT-CGTGAGATGCCGTGTAAACACA 749
|| || |||||| ||||||| || ||| | || ||| |||||||||||||||||||||
Sbjct 601 GTTTGCACGGAGATTTTCGAGGC-GGAGA-CGGAGGCACGTGAGATGCCGTGTAAACACC 658
Query 750 TATTTCACGGTGATTGTATTGTTCCATGGCTTTCGATTCGGAATTCGTGTCCTGTGTGTA 809
| || |||| ||||| || || || ||||| |||||||| || || || || ||||| |
Sbjct 659 TCTTCCACGACGATTGCATCGTGCCTTGGCTATCGATTCGAAACTCTTGCCCCGTGTGCA 718
Query 810 GATTTGAGTTACCTTCAGATCC-AATCCAACGGAGTAATGAAGAA-GA--AC-AT---GC 861
|||| ||| |||||||||| || |||| | ||||| || || || || | || ||
Sbjct 719 GATTCGAGCTACCTTCAGAGCCTAATCGA-CGGAGCAAC-AACAACGAGGAGGATAACGC 776
Query 862 CGTTGGGATGACGATTTGGAGATTACCTGGTGGTGGTTTCGCTGTTGGTAGGTTTAACGC 921
||| |||||||| ||||||||| | || |||||||| ||||| || || |||||||||||
Sbjct 777 CGTGGGGATGACAATTTGGAGACTCCCCGGTGGTGGATTCGCCGTCGGGAGGTTTAACGC 836
Query 922 GGGAGTGAGAGAAGGTGAGAG-GATATTGCCGGTGGTATTGACGGAGATGGATGGTGGTG 980
| | ||||||| || ||||| | | || || ||||| || || || ||||| |||||||
Sbjct 837 CGCAATGAGAGACGGAGAGAGAGTT-TTACCTGTGGTGTTAACAGAAATGGACGGTGGTG 895
Query 981 G-ACTTGGTAGTA---ATGAAGGACCGAGAAGGATATCTTGGGTTAGAG-CTCATGAG-A 1034
| | |||||| || | || || || ||| |||| || |||||||| | | || | | |
Sbjct 896 GGA-TTGGTAATAGCCAGGACGGTCCTAGACGGATCTCATGGGTTAG-GTCACACG-GTA 952
Query 1035 CAC-CGGAGAT-G-AGTAGGAATGGTGGTCGTTCTGGTAATGG-T--GG---TAGATTGA 1085
||| || | || | | ||| || |||||| | || |||| ||| | || ||||||||
Sbjct 953 CACTCG-A-ATCGGA-TAGCAACGGTGGTGGCTCCGGTACTGGCTCCGGCGGTAGATTGA 1009
Query 1086 GAAGAGCTG-TTCGTGGAATGGTTTCGTTTATGAGAAGAGTTAGACCAAGTCGTGGCTCT 1144
|||| | || ||||||||||||| ||||| ||||| ||||| ||||||| |||| |||||
Sbjct 1010 GAAG-GATGGTTCGTGGAATGGTGTCGTTAATGAGGAGAGTGAGACCAAATCGTAGCTCT 1068
Query 1145 TC 1146
||
Sbjct 1069 TC 1070
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51313446282
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5