BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G46630.1
Length=939
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937374 jgi|Araly1|937374|scaffold_501565.1 937 0.0
> Ahg937374 jgi|Araly1|937374|scaffold_501565.1
Length=652
Score = 937 bits (507), Expect = 0.0
Identities = 613/662 (93%), Gaps = 15/662 (2%)
Strand=Plus/Plus
Query 95 CTCCTTGATTGTGGTCGATGACCTCGCTACTTCTTCTCAGAACGCTTCCGCTTCTCCGCA 154
|||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||
Sbjct 4 CTCCTTGATTGTGGTCGATGACCTCGCTACTTCTCCTCAGAACTCTTCCGCTCCTCCGCA 63
Query 155 ACGGATTTCTCAACCATCGTCATCAAGTTGGTATCGTAGCTGGTGGAATTCTCAGTCACC 214
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 64 ACGGTTTTCTCAACCATCGTCATCAAGTTGGTATCGTAGCTGGTGGAATTCTCAGTCACC 123
Query 215 GTCGGCGTTTGTTGTGTTCTCTTGCTGATAGACCACAGTTTTACGAGAATAATGATTCTG 274
|||||||||||| |||||| |||||||||| |||||||||||||||| |||||
Sbjct 124 GTCGGCGTTTGTGGTGTTCGCTTGCTGATAAACCACAGTTTTACGAG---AATGA----- 175
Query 275 TTTCTCCGGTGGAGGGATCCGGCGCGGCGGCGATGAACGTGACATCGCCTGTTGTTGATA 334
|||| ||| |||||||||| | || ||||||||||||| ||| |||||||||| |||||
Sbjct 176 -TTCTACGGCGGAGGGATCC-G-GC-GCGGCGATGAACGCGACGTCGCCTGTTGGTGATA 231
Query 335 ATAGCTGGCGTTATGAAGATCCTGATTATCGGAAATGGAAGAATCTAGAGGCTGAGATTC 394
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 ATAGCTGGCGTTTTGAAGATCCTGATTATCGGAAATGGAAGAATCTAGAGGCTGAGATTC 291
Query 395 TTCGAGATATTGAACCTATTTCTCTTCTCGCTAAAGAAATTCTTCATTCCGATAGGTATT 454
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 292 TTCGTGATATTGAACCTATTTCTCTTCTCGCTAAAGAAATTCTTCATTCGGATAGGTATT 351
Query 455 TGGATGGAGAACGCTTAGATTTTGAGGATGAGAAAATTGTCATGGAAAAGCTTCTTCCTT 514
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |
Sbjct 352 TGGATGGAGAACGCTTAGAATTTGAGGATGAGAAAATTGTCATGGAAAAGCTTCTTGCGT 411
Query 515 ATCACCCATATTCCAAAGACAAAATTGGTTGTGGTCTTGATTTTATAATGGTTGATCGGC 574
||||||| || |||||||| |||||||| || ||||| ||||||||||||||||||||||
Sbjct 412 ATCACCCGTACTCCAAAGATAAAATTGGCTGCGGTCTCGATTTTATAATGGTTGATCGGC 471
Query 575 ATCCACAATTCAGGCACTCAAGATGCCTCTTTGTTGTGAGAACAGATGGTGGATGGATAG 634
|||| ||||||||||||||||| |||||||||||||||||||| || |||||||||||||
Sbjct 472 ATCCTCAATTCAGGCACTCAAGGTGCCTCTTTGTTGTGAGAACGGACGGTGGATGGATAG 531
Query 635 ATTTCTCGTACCA-AAAGTGTCTTCGAGCCTATGTTCGAGATAAGTACCCGTCTCACGCT 693
||||||| ||||| ||| ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 532 ATTTCTCCTACCAGAAA-TGTCTTCGAGCTTATGTCCGAGATAAGTACCCGTCTCACGCT 590
Query 694 GAGAGGTTTATTCGTGAACATTTTAAGCGTGCTAGTAGCTAAAAA-TCTGTATAACTGTC 752
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| || |
Sbjct 591 GAGAGATTTATTCGTGAACATTTTAAGCGTGCTAGTAGCTAAAAAATCTGTATAATTGCC 650
Query 753 CC 754
||
Sbjct 651 CC 652
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34844346138
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5