BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G46640.3
Length=1382
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485038 jgi|Araly1|485038|fgenesh2_kg.5__1030__AT3G46640.2 1445 0.0
Ahg496092 jgi|Araly1|496092|fgenesh2_kg.8__1908__AT5G59570.1 324 1e-87
> Ahg485038 jgi|Araly1|485038|fgenesh2_kg.5__1030__AT3G46640.2
Length=1438
Score = 1445 bits (782), Expect = 0.0
Identities = 966/1051 (92%), Gaps = 28/1051 (3%)
Strand=Plus/Plus
Query 21 GTTTCACTTCTGaaaaaaaaaaaaaaaaaaaTTGTTTGCTCATCATCTTCA-CAAACCAA 79
|||||||||||| ||||||||||||||||||||| |||||||||||| ||| ||||||||
Sbjct 1 GTTTCACTTCTG-AAAAAAAAAAAAAAAAAATTG-TTGCTCATCATCGTCACCAAACCAA 58
Query 80 ACTTCTCTTC-TTCTCCGATCTCAGATTTG-AATTTTTATCGATTTTGAGCTTCGAAGAG 137
||||||| || |||||||||||| |||| | |||||| |||||||||||||||| ||||
Sbjct 59 ACTTCTC-TCTTTCTCCGATCTCCGATTCGAAATTTTCATCGATTTTGAGCTTCAAAGA- 116
Query 138 C-TCAATCTCTAACTGAATTTCGAGAAATTAGAGAGTTTGAAATGGGAGAGGAAGTACAA 196
| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 117 CTTCAATCTCTAACTGAATTTCAAGAAATTAGAGAGTTTAAAATGGGAGAGGAAGTACAA 176
Query 197 ATGAGCGATTACGATGTTTCCGGCGACGGAGATAGGGTTTCTGAATGGGAGATGGGATTA 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 177 ATGAGCGATTACGATGTTTCCGGCGACGGAGATAGGGTTTCTGAATGGGAGATGGGACTA 236
Query 257 CCAAGCGACGAAGATCTAGCATCTCTTTCTTACTCTCTGATTCCACCGAATTTGGCGATG 316
|| |||||||||||||||||||| || ||||||||||||||||| ||||||||||| |||
Sbjct 237 CCTAGCGACGAAGATCTAGCATCGCTCTCTTACTCTCTGATTCCGCCGAATTTGGCTATG 296
Query 317 GCGTTTAGTATCACACCGGAGAGAAGCCGTACGATTCAGGATGTGAATCGTGCATCGGAG 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GCGTTTAGTATCACACCGGAGAGAAGCCGTACGATTCAGGATGTGAATCGTGCATCGGAG 356
Query 377 ACGACGCTCTCGTCGCTACGTGGTGGATCTTCAGGTCCAAATACCTCGTCGTCGAATAAT 436
|||||| |||| ||||| |||| |||||||| |||| ||||||||| ||||||||||||
Sbjct 357 ACGACGTTCTCCTCGCTGTGTGGCGGATCTTCCGGTCAAAATACCTCATCGTCGAATAAT 416
Query 437 ------AA--C-GTGGAGGAGGAAGATCGAGTTGGATCTAGCAGTCCTGGATCGGATTCG 487
|| | |||||||| ||||||||||| ||||| || ||||||||||||||||||
Sbjct 417 AACAGCAACGCGGTGGAGGAAGAAGATCGAGTCGGATCGAGTAGTCCTGGATCGGATTCG 476
Query 488 AAGAAGCAAAAGACATCAAACGGTGATGGAGATGACGGTGGCGGTGTGGATCCGGATTCG 547
|||||||| |||| |||| |||| | ||| | || || ||||||||||||||| || |
Sbjct 477 AAGAAGCAGAAGATATCAGACGGCGGTGGTGGTGGCGATGGCGGTGTGGATCCAGA-T-- 533
Query 548 GCGATGGCGGCGGAAGAAGGAGATTCAGGAACTGAAGATCTATCTGGGAAAACACTTAAA 607
|| ||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 534 GC---GGCGGTGGAGGAAGGAGATTCAGGAACTGAAGATCTATCTGGGAAAACACTGAAA 590
Query 608 CGACCGCGTTTAGTGTGGACACCGCAGCTACACAAGAGATTCGTTGACGTTGTAGCTCAC 667
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 591 CGACCGCGTTTAGTGTGGACACCGCAGCTACACAAGAGATTCGTTGACGTTGTTGCTCAC 650
Query 668 TTAGGGATCAAAAACGCTGTTCCGAAGACGATTATGCAGCTGATGAACGTTGAAGGATTA 727
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 651 TTAGGAATCAAAAACGCTGTTCCAAAGACGATTATGCAGCTGATGAACGTTGAAGGATTA 710
Query 728 ACTCGTGAGAACGTTGCGTCTCATCTTCA-AAAGTATAGGCTTTACCTCAAAAGGATGCA 786
||||| |||||||||||||||||||| || ||| |||||||||||||||||||| |||||
Sbjct 711 ACTCGAGAGAACGTTGCGTCTCATCTCCAGAAA-TATAGGCTTTACCTCAAAAGAATGCA 769
Query 787 GGGATTGACTAATGAAGGTCCCTCTGCTTCGGATAAGCTCTTCTCTTCAACACCTGTTCC 846
||| ||||| || |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 770 GGGGTTGACGAACGAAGGTCCCTCTGCTTCGGATAAGCTCTTCTCTTCAACACCTGTGCC 829
Query 847 TCCACAGAGCTTCCAAGATATCGGTGGCGGTGGCGGTAGCAGCGGTAATGTTGGAGTGCC 906
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 830 TCCACAGAGCTTCCAAGACATCGGTGGCGGTGGCGGTAGCAGCGGTAATGTTGGAGTGCC 889
Query 907 GATTCCGGGGGCGTATGGAACGCAACAGATGATGCAGATGCCAGTTTATGCACATCATAT 966
||||| ||| |||||||| |||| | |||||||||||||||||||||||||||||||||
Sbjct 890 AATTCCAGGGCCGTATGGAGCGCAGCCGATGATGCAGATGCCAGTTTATGCACATCATAT 949
Query 967 GGGTATGCAAGGATatcatcatcaaaatcataatcatgatccttatcatcagaatcatcg 1026
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 GGGTATGCAAGGATATCATCATCAAAATCATAATCATGATCCTTATCATCAGAATCATCA 1009
Query 1027 tcatcatcat---GGAGCTGGTGGAAATGGT 1054
|||||||||| ||||||||||||| ||||
Sbjct 1010 TCATCATCATCATGGAGCTGGTGGAAGTGGT 1040
Score = 230 bits (124), Expect = 3e-59
Identities = 182/208 (88%), Gaps = 12/208 (6%)
Strand=Plus/Plus
Query 1110 AAA-TTGCATCTGT-TCAGGAGAGGATCATACAAA-GTATCATGTAGAAGCTAAACCAAG 1166
||| || ||||||| | |||| | ||||||||||| |||||||| |||||| | ||||
Sbjct 1232 AAATTTTCATCTGTGT-AGGA-AAGATCATACAAACATATCATGTCCAAGCTAGATCAAG 1289
Query 1167 AGAAGA-CTGCAGACAAATTTCATATACTCATTTTTCTATCTTGTAAGAG----GTAAGT 1221
|||||| || | ||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 1290 AGAAGACCT-CTGACAAATTTCATATACTCA-TTTTCTATCTTGTAAGAGATAAGTAAGT 1347
Query 1222 CCCTTTGTTTTATTTGTCTGCAGACTTCTTAAAGTGGTAATCAAGAGAGTGAATTGTTTA 1281
||||||| |||||||||||| |||||||||| |||| ||||||| |||||||||||||||
Sbjct 1348 CCCTTTGCTTTATTTGTCTGTAGACTTCTTAGAGTGATAATCAAAAGAGTGAATTGTTTA 1407
Query 1282 TTTCTGTGAGAGATGGCGTCAGACACAA 1309
|||||||||||||||| |||||||||||
Sbjct 1408 TTTCTGTGAGAGATGGAGTCAGACACAA 1435
> Ahg496092 jgi|Araly1|496092|fgenesh2_kg.8__1908__AT5G59570.1
Length=1339
Score = 324 bits (175), Expect = 1e-87
Identities = 273/318 (86%), Gaps = 15/318 (5%)
Strand=Plus/Plus
Query 556 GGCGGAAGAAGGAGATTCAGGAACTGAAGAT-CTATCTGGGAAAACACTT-AAACGACCG 613
|||||| || |||||||| || ||||||||| | || |||| |||| || ||||| |||
Sbjct 466 GGCGGAGGAGGGAGATTCCGGGACTGAAGATGC-GTCAGGGAGAACA-TTGAAACGGCCG 523
Query 614 CGTTTAGTGTGGACACCGCAGCTACACAAGAGATTCGTTGACGTTGTAGCTCA-CTTAGG 672
||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||
Sbjct 524 CGTTTAGTGTGGACACCGCAGCTACACAAGAGATTCGTTGACGTTGTGGCTCATCT-AGG 582
Query 673 GATCAAAAACGCTGTTCCGAAGACGATTATGCAGCTGATGAACGTTGAAGGA-TTAACTC 731
||| |||||||| || |||||||||||||||||||||||||| ||||||||| ||| |||
Sbjct 583 GATTAAAAACGCAGTGCCGAAGACGATTATGCAGCTGATGAATGTTGAAGGACTTA-CTC 641
Query 732 GTGAGAACGTTGCGTCTCATCTT-CA-AAAGTATAGGCTTTACCTCAAAAGGATGCAGGG 789
|||||||||||||||||||| || || ||| || ||||||||||| ||| |||| || ||
Sbjct 642 GTGAGAACGTTGCGTCTCAT-TTGCAGAAA-TACAGGCTTTACCTTAAACGGATTCAAGG 699
Query 790 ATTGACTAATGAAG--G-TCCCTCTGCTTCGGATAAGCTCTTCTCTTCAACACCTGTTCC 846
|||||| | |||| | ||| | | | |||||| |||||||||||||||| || |||||
Sbjct 700 ATTGACGACGGAAGAAGATCCGTATTCGTCGGATCAGCTCTTCTCTTCAACGCCGGTTCC 759
Query 847 TCCACAGAGCTTCCAAGA 864
||||||| |||| |||||
Sbjct 760 TCCACAGTGCTTTCAAGA 777
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51732798369
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5