BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G46650.1 Length=1416 Score E Sequences producing significant alignments: (Bits) Value Ahg485039 jgi|Araly1|485039|fgenesh2_kg.5__1031__AT3G46650.1 1598 0.0 Ahg347758 jgi|Araly1|347758|fgenesh1_pg.C_scaffold_5001150 752 0.0 Ahg897487 jgi|Araly1|897487|Al_scaffold_0005_1453 669 0.0 Ahg485042 jgi|Araly1|485042|fgenesh2_kg.5__1034__AT3G46690.1 643 0.0 Ahg897494 jgi|Araly1|897494|Al_scaffold_0005_1460 501 5e-141 Ahg485040 jgi|Araly1|485040|fgenesh2_kg.5__1032__AT3G46670.1 490 1e-137 Ahg897491 jgi|Araly1|897491|Al_scaffold_0005_1457 444 9e-124 > Ahg485039 jgi|Araly1|485039|fgenesh2_kg.5__1031__AT3G46650.1 Length=1301 Score = 1598 bits (865), Expect = 0.0 Identities = 1071/1171 (91%), Gaps = 12/1171 (1%) Strand=Plus/Plus Query 8 AGAAAATGGAAGCAAAGAGAAGGATAGTGTTAGTTCCAATTCCAGCACAAGGTCATGTAA 67 ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| | Sbjct 1 AGAAAATGGAAGCCAAGAGAAGGATAGTGTTAGTTCCAGTTCCAGCACAAGGTCATGTTA 60 Query 68 CTCCACTGATGCAACTTGGGAAAGTACTTAACTCGAAGGGCTTCTCAATTACAGTTGTTG 127 ||||| |||||||||||||||||| ||| ||||| |||||||||||||||||||||||| Sbjct 61 CTCCAATGATGCAACTTGGGAAAGCCCTTTACTCGGAGGGCTTCTCAATTACAGTTGTTG 120 Query 128 AGGGACATTTCAATCAAGTAAGCTCTTCTTCTCAACACTTCCCTGGTTTTCAGTTTGTCA 187 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 AGGGACACTTCAATCAAGTAAGCTCTTCTTCTCAACACTTCCCTGGTTTTCAGTTTGTCA 180 Query 188 CCATAAAAGAAAGCTTACCAGAGTCTGAATTCGAGAAACTCGGAGGAATCGAGTCTATGA 247 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| Sbjct 181 CCATAAAAGAAAGCTTACCAGAGTCTGAATTCGAGAGACTCGGAGGAATCGAGTTTATGA 240 Query 248 TAACGCTCAACAAAACAAGCGAGGCAAGCTTCAAGGACTGTATAAGTCAGTTGTTGCTA- 306 ||| |||||||||||| || ||||||||||||||||||||||||||||||||||||| | Sbjct 241 TAAAGCTCAACAAAACCAGTGAGGCAAGCTTCAAGGACTGTATAAGTCAGTTGTTGC-AG 299 Query 307 CAACAAGGCAATGATATTGCATGTATCATTTACGACGAGTACATGTACTTCTGTGGAGCT 366 ||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||| ||| Sbjct 300 CAACAAGGCAATGATATAGCATGTATCATCTACGACGAGTTCATGTACTTCTGTGGTGCT 359 Query 367 GCAGCTAAGGAGTTCAG-CATTCCTAGTGTCATATTCAGCACT-CAAAGTGCTGCAAATT 424 |||||||| ||||||| | |||| |||||||| |||| |||| ||| ||||| ||||| Sbjct 360 GCAGCTAAAGAGTTCAAAC-TTCCCAGTGTCATCTTCAACACTACAA-GTGCTACAAATC 417 Query 425 ACGTTTCACATCCTGATATGCAAGACAAGGTGGTGGAAAATTTGTATCCATTACGATACA 484 | ||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||| Sbjct 418 AAGTTTCTCATCCTGAAATGCAAGACAAAGTGGTGGAAAATTTGTATCCATTACGATACA 477 Query 485 AAGACCTACCGACTTCAGGAATGGGGCCACTAGATCGATTTTTTGAGCTCTGTAGGGAAG 544 |||||||||| | ||||| ||||||||||||||||||| |||||||||||||||| |||| Sbjct 478 AAGACCTACCTATTTCAGAAATGGGGCCACTAGATCGAGTTTTTGAGCTCTGTAGAGAAG 537 Query 545 TAGCCAACAAAAGAACAGCTTCAGCTGTTATCATCAACACGGTGAGCTGTCTAGAGAGCT 604 ||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||| Sbjct 538 TAGGCAACAAAAGAACAGCTTCTGGTGTTATCATCAACACGGTGAGCTGTCTAGAGAGCT 597 Query 605 CGTCTCTGTCATGGCTGGAACAAAAAGT-AGGAATTTCTGTGTATCCATTAGGCCCTCTT 663 ||||| ||||||||||| ||||| |||| || |||| | |||| |||||||||||||||| Sbjct 598 CGTCTTTGTCATGGCTGCAACAAGAAGTCAG-AATTCCAGTGTCTCCATTAGGCCCTCTT 656 Query 664 CACATGACAGATTCATCACCTTCTAGTTTACTTGAAGAGGACAGGAGCTGCATTGAATGG 723 |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 657 CACATGACAGCTTCACCACCTTCTAGTTTACTTGAAGAGGACAGGAGCTGCATTGAATGG 716 Query 724 CTGAACAAGCAGAAACCAAAGTCAGTGATATACATAAGCATAGGAACACTTGGTCAAATG 783 ||||||||||||||||| | |||||| ||||| |||||| |||||||||||||||||||| Sbjct 717 CTGAACAAGCAGAAACCGAGGTCAGTCATATATATAAGCGTAGGAACACTTGGTCAAATG 776 Query 784 GAAACCAAGGAAGTTTTGGAGATGTCTTGGGGGTTGTGTAATAGCAACCAACCATTTCTA 843 |||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||| || Sbjct 777 GAAACCAAGGAAGTGTTGGAGATGGCTTGGGGGTTGTGTAATAGCAACCAACCGTTTTTA 836 Query 844 TGGGTTATCCGAGCGGGTTCTATCCTTGGCACTAACGGAATAGAGTCATTGCCAGAGGA- 902 |||||||||||||||||||| |||||||||| |||||| ||||| ||||||||||| || Sbjct 837 TGGGTTATCCGAGCGGGTTCCATCCTTGGCATTAACGGTATAGATTCATTGCCAGATGAA 896 Query 903 TGTCAATAAAATGGTCTCTGAAAGAGGATACATTGTGAAACGAGCACCGCAGATAGAAGT 962 | ||||||| |||||||| |||| |||||||||||||||||| ||||||||||||||||| Sbjct 897 T-TCAATAAGATGGTCTCAGAAATAGGATACATTGTGAAACGGGCACCGCAGATAGAAGT 955 Query 963 ACTTGGACATCCTGCAGTGGGAGGCTTCTGGAGCCACTGTGGATGGAACTCAATACTCGA 1022 ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 956 ACTAGGACATCCTGCAGTGGGAGGCTTCTGGAGCCACTGTGGATGGAACTCAACACTCGA 1015 Query 1023 GAGCATTGGAGAAGGAGTTCCAATGATTTGCAAGCCCTTTCATGGCGAGCAAAAGTTGAA 1082 |||||||||||||||||| ||||||||||||| ||| |||||||| |||||||||||||| Sbjct 1016 GAGCATTGGAGAAGGAGTGCCAATGATTTGCAGGCCTTTTCATGGGGAGCAAAAGTTGAA 1075 Query 1083 TGCAATGTAC-TTGGAGTGTGTTTGGAAAATTGGGATTCAAGTGGAGGGTGATCTAGAAA 1141 |||||||| ||| | | ||||||| ||| ||| |||| ||||| ||| | | || | Sbjct 1076 CGCAATGTATATTGAAA-GAGTTTGGAGAATAGGGTTTCAGGTGGAAGGTAAAGTGGATA 1134 Query 1142 GAGGAGCGGTCGAGAGAGCTGTGAAGAGGTT 1172 |||||| || |||| ||||||||||||||| Sbjct 1135 GAGGAGAAGTTGAGAAAGCTGTGAAGAGGTT 1165 > Ahg347758 jgi|Araly1|347758|fgenesh1_pg.C_scaffold_5001150 Length=1359 Score = 752 bits (407), Expect = 0.0 Identities = 699/838 (83%), Gaps = 27/838 (3%) Strand=Plus/Plus Query 434 ATCCTGATATGCAAGACAAGGTGGTGGAAAATTTGTATCCATTACGATACAAAGACCTAC 493 ||||||| ||||||||| ||||| ||||| |||| |||| ||| |||| |||||| ||| Sbjct 482 ATCCTGAAATGCAAGACGAGGTGTTGGAAGGTTTGCATCCTTTAAGATATAAAGACTTAC 541 Query 494 CGACTTCAGGAATGGGGCCACTAGATCGATTTTTTGAGCTCTGTAGGGAAGTAGCCAACA 553 | ||||||||| | |||||| |||| | | |||| ||| | ||| ||||||||| |||| Sbjct 542 CAACTTCAGGATTTGGGCCATTAGAGCCACTTTTGGAGATGTGTTGGGAAGTAGTTAACA 601 Query 554 AAAGAACAGCTTCAGCTGTTATCATCAACACGGTGAGCTGTCTAGAGAGCTCGTCTCTGT 613 ||||||||||||| ||| |||||||||| || | || ||||||||||||| | |||| | Sbjct 602 AAAGAACAGCTTCCGCTATTATCATCAATACTGCAAGTTGTCTAGAGAGCTTGACTCTTT 661 Query 614 CATGGCTGGAACAAAAAGTAGGAATTTCTGTGTATCCATTAGGCCCTCTTCACATGACAG 673 ||||| || ||||| || | |||||| | |||||||||||||||||||||||||| |||| Sbjct 662 CATGGATGCAACAAGAACTCGGAATTCCAGTGTATCCATTAGGCCCTCTTCACATAACAG 721 Query 674 ATTCA-TCACCT---TCTAGTTTACTTGAAGAGGACAGGAGCTGCATTGAATGGCTGAAC 729 |||| || ||| |||||||||| |||||||||| ||||||| |||||||||||||| Sbjct 722 CTTCATTC-CCTGGACCTAGTTTACTCGAAGAGGACAAGAGCTGCGTTGAATGGCTGAAC 780 Query 730 AAGCAGAAACCAAAGTCAGTGATATACATAAG-CATAGGAA-CACTTGGTCAAATGGAAA 787 ||||||||||||| |||||| ||||| || || | | |||| | |||| ||||||||||| Sbjct 781 AAGCAGAAACCAAGGTCAGTCATATATAT-AGCCTTGGGAAGC-CTTGCTCAAATGGAAA 838 Query 788 CCAAGGAAG-TTTTGGAGATGTCTTGGGGGTTGT-GTAATAGCAACCAACCATTTCTATG 845 ||| || || | || |||||| ||||||| |||| | |||||||||||||| ||| |||| Sbjct 839 CCATGG-AGATGTTAGAGATGGCTTGGGGATTGTCG-AATAGCAACCAACCTTTTTTATG 896 Query 846 GGTTATCCGAGCGGGTTCTATCCTTGGCACTAACGGAATAGAGTCATTGCCAGAGGATGT 905 ||| |||||||| ||||||||||||||| | |||| ||||||||||||||||| || | Sbjct 897 GGTCATCCGAGCAGGTTCTATCCTTGGCTCGGACGGGATAGAGTCATTGCCAGATGAAAT 956 Query 906 CAATAAAATGGTCTCTGAAAGAGGATACATTGTGAAACGAGCACCGCAGATAGAAGTACT 965 || ||| ||||| || ||||||||||||||||||||| | |||||||||||||||||||| Sbjct 957 CAGTAAGATGGTATCCGAAAGAGGATACATTGTGAAATGGGCACCGCAGATAGAAGTACT 1016 Query 966 TGGACATCCTGCAGTGGGAGGCTTCTGGAGCCACTGTGGATGGAACTCAATACTCGAGAG 1025 || ||||||||| |||||||| || ||||||||||||||||||||||||| ||||||||| Sbjct 1017 TGCACATCCTGCTGTGGGAGGGTTTTGGAGCCACTGTGGATGGAACTCAACACTCGAGAG 1076 Query 1026 CATTG-GAGAAGGAGTTCCAATGATTTGCAAGCCCTTTCATGGCGAGCAAAAGTTGAATG 1084 |||| | |||||||||||||||||||||| ||| ||||| ||||| |||||||| |||| Sbjct 1077 TATTGCG-GAAGGAGTTCCAATGATTTGCAGGCCTTTTCAAGGCGAACAAAAGTTAAATG 1135 Query 1085 CAATGTACT-TGGAGTGTGTTTGGAAAATTGGGATTCAAG--TGGAGGGTGATCTAGAAA 1141 ||||||| | | || ||||||||||||| ||||||| || || |||| || | |||| Sbjct 1136 CAATGTA-TATAGAAAGTGTTTGGAAAATAGGGATTC-AGCTTGAAGGG-GAAGTGGAAA 1192 Query 1142 GAGGAGCGGTCGAGAGAGCTGTGAAGAGGTTAACGGTTT-TCGAAGAAGGAG-AGGAAAT 1199 ||||||||||||||||||||||||||||||| | || | ||||| || | ||| | | Sbjct 1193 GAGGAGCGGTCGAGAGAGCTGTGAAGAGGTTGATTGTGGAT-GAAGATGGCGTAGGTA-T 1250 Query 1200 GAGAAAGAGAGCCGTCACTTTGA-AGGAGGAGCTGAGAGCCTCTGTTAGAGGTGGAGG 1256 ||| |||||||| | ||||| || || |||| | ||||||||| ||| ||||||| Sbjct 1251 GAGGGAGAGAGCCTTTGGTTTGAGAG-AGAAGCTCAAAGCCTCTGTAAGAAGTGGAGG 1307 Score = 390 bits (211), Expect = 1e-107 Identities = 347/413 (84%), Gaps = 8/413 (2%) Strand=Plus/Plus Query 22 AAGAGAAGGATAGTGTTAGTTCCAATTCCAGCACAAGGTCATGTAACTCCACTGATGCAA 81 |||||||||||| ||||||||||| || | ||||||||||||||||||||| |||||||| Sbjct 19 AAGAGAAGGATATTGTTAGTTCCAGTTGCTGCACAAGGTCATGTAACTCCAATGATGCAA 78 Query 82 CTTGGGAAAG-TACTTAACTCGAAGGGCTTCTCAATTACAGTTGTTGAGGGACATTTCAA 140 |||||||||| | ||| | || |||||||||||||||||||||| | ||||||| || || Sbjct 79 CTTGGGAAAGCT-CTTCAGTCAAAGGGCTTCTCAATTACAGTTGCTCAGGGACAGTTGAA 137 Query 141 TCAAGTAAGCTCTTCTTCTCAACACTTCCCTGGTTTTCAGTTTGTCACCATAAAAGAAAG 200 ||| |||||||||| || ||||| || ||||||||||| ||||||||| || |||||| Sbjct 138 GCAAATAAGCTCTTCATCGCAACATTTTCCTGGTTTTCACTTTGTCACCCTACCAGAAAG 197 Query 201 CTTACCAGAGTCTGAATTCGAGAA-ACTCGGAGGAATCGAGTCTATG-ATAACGCTCAAC 258 ||||| |||||||| || | || ||| |||| ||| || | |||| | || ||||||| Sbjct 198 TTTACCTCAGTCTGAA-TCTAAAACACTAGGAGCAATAGAATTTATGAAGAA-GCTCAAC 255 Query 259 AAAACAAGCGAGGCAAGCTTCAAGGACTGTATAAGTCAGTTGTTGCTACAACAAGGCAAT 318 |||||||||||||||||||||||||| ||||||||| |||| ||||| |||||||||| | Sbjct 256 AAAACAAGCGAGGCAAGCTTCAAGGAGTGTATAAGTAAGTTATTGCTGCAACAAGGCAGT 315 Query 319 GATATTGCATGTATCATTTACGACGAG-TACATGTACTTCTGTGGAGCTGCAGCTAAGGA 377 ||||| || |||||||| |||||| || | ||||||||||||| ||||||||||||||| Sbjct 316 GATATAGCTTGTATCATCTACGACAAGCTT-ATGTACTTCTGTGAAGCTGCAGCTAAGGA 374 Query 378 GTTCAGCATTCCTAGTGTCATATTCAGCACTCAAAGTGCTGCAAATTACGTTT 430 ||||| ||||| ||| |||| || ||| || |||||| | ||| | |||| Sbjct 375 GTTCAATATTCCCAGTATCATCTTTAGCTCTTGCAGTGCTACCAATCAAGTTT 427 > Ahg897487 jgi|Araly1|897487|Al_scaffold_0005_1453 Length=1359 Score = 669 bits (362), Expect = 0.0 Identities = 689/843 (82%), Gaps = 37/843 (4%) Strand=Plus/Plus Query 434 ATCCTGATA-TGCAAGACAAGGTGGTGGAAAATTTGTATCCATTACGATACAAAGACCTA 492 ||||||| | | | ||||||||||||||| |||||| |||||||| |||||||||| || Sbjct 482 ATCCTGA-ACTACGAGACAAGGTGGTGGATAATTTGCATCCATTAAGATACAAAGATCT- 539 Query 493 CC-GACTTCAGGA-ATGGGGCCACTAGATCGATTTTTTGAGCTCTGTAGGGAAGTAGCCA 550 || | ||||| || | |||||| |||| | | || | ||| || || ||||||||| | Sbjct 540 CCTGCCTTCA-GATTTTGGGCCATTAGAACCAGTTCTGGAGTTCCGTCGGGAAGTAGTTA 598 Query 551 ACAAAAGAACAGCTTCAGCTGTTATCATCAACACGGTGAGCTGTCTAGAGAGCTCGTCTC 610 |||||||||||||||||||| | ||| | |||||| || ||||||||||||| ||||| Sbjct 599 ACAAAAGAACAGCTTCAGCTCTCATCCTTAACACGACCAGGTGTCTAGAGAGCTTGTCTC 658 Query 611 TGTCATGGCTGGAACAAAAAGTAGGAATTTC-TGTGTATC-CATTAGGCCCTCTTCACAT 668 |||||||| || ||||| || | |||| ||| ||||| | ||||||||||||||||||| Sbjct 659 TGTCATGGTTGCAACAAGAACTCGGAA-TTCGAGTGTA-CTCATTAGGCCCTCTTCACAT 716 Query 669 GACAGATTCATCACC---TTCTAGTTTACTTGAAGAGGACAGGAGCTGCATTGAATGGCT 725 |||| |||| |||| ||||||||| | |||||||||| |||||||||||||||||| Sbjct 717 TACAGCTTCAGCACCAGGATCTAGTTTAGTGGAAGAGGACATGAGCTGCATTGAATGGCT 776 Query 726 GAACAAGCAGAAACCAAAGTCAGTGATATACATAAGCATAGGAA-CACTTGGTCAAATGG 784 |||||| |||||||| | |||||| |||||| ||||||| |||| || | || ||||| Sbjct 777 GAACAATCAGAAACCGAGGTCAGTCATATACGTAAGCATGGGAACCA-TACATCTAATGG 835 Query 785 AAACCAAGGAAGTTTTGGAGATGTCTTGGGGGTTGTGTAATAGCAACCAACCATTTCTAT 844 || |||||||||| ||||||||| |||||||||||| ||||||||||||||| ||| ||| Sbjct 836 AAGCCAAGGAAGTGTTGGAGATGGCTTGGGGGTTGTTTAATAGCAACCAACCTTTTTTAT 895 Query 845 GGGTTATCCGAG-CGGGTTCTATCCTTGGCACT-AACGGAATAGAGTCATTGCCAGAGGA 902 |||| ||||| | ||||||| |||| |||| | || || ||||||||||||||||| || Sbjct 896 GGGTCATCCG-GTCGGGTTCCATCCATGGC-TTCAATGGGATAGAGTCATTGCCAGAAGA 953 Query 903 TGTCAATAAAATGGTCTCT-GAAAGAGGATACATTGTGAAACGA-GCACCGCAGATAGAA 960 ||| ||| |||| || | |||||||||||||||||||| | | ||||||||||||||| Sbjct 954 AGTCGGTAAGATGGCCT-TAGAAAGAGGATACATTGTGAAGC-AGGCACCGCAGATAGAA 1011 Query 961 GTACTTGGACATCCTGCAGTGGGAGGCTTCTGGAGCCACTGTGGATGGAACTCAATACTC 1020 |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| Sbjct 1012 GTACTTGGACATCCTGCAGTGGGAGGCTTCTGGAGCCATTGTGGATGGAACTCAACACTG 1071 Query 1021 GAGAGCATTG-GAGAAGGAGTTCCAATGATTTGCAAGCCCTTTCATGGCGAGCAAAAGTT 1079 ||||| |||| | ||||||||||| |||||||||| ||| ||| |||| ||||| | ||| Sbjct 1072 GAGAGTATTGTG-GAAGGAGTTCCGATGATTTGCAGGCCTTTTAATGGTGAGCAGAGGTT 1130 Query 1080 GAATGCAATGTACT-TGGAGTGTGTTTGGAAAATTGGGATTCAAG-TGGAGGGTGATCTA 1137 || |||| || | | || |||||||| | |||||||| | | || ||||| | Sbjct 1131 AAACGCAAAGTT-TATAGAAACTGTTTGGAGTGTAGGGATTCA-GCTCGAAGGTGAAGTG 1188 Query 1138 GAAAGAGGAGCGGTCGAGAGAGCTGTGAAGAGGTTAA-CG-GTTTTCGAAGAAGGAG-AG 1194 |||||||||| ||| |||||||||||||||||||| | || | | |||||||| | || Sbjct 1189 GAAAGAGGAGAGGTTGAGAGAGCTGTGAAGAGGTTGATCGTGGAT--GAAGAAGGTGCAG 1246 Query 1195 GAAATGAGAAAGAGAGCCGTCACTT-TGAAGGAGGAGCTGAGAGCCTCTGTTAGAGGTGG 1253 ||| |||| |||||||| | || | || ||| |||| | ||||||||| ||| |||| Sbjct 1247 GAA-TGAGGGAGAGAGCCCTTG-TTCTAAAAGAGAAGCTCAAAGCCTCTGTAAGAAGTGG 1304 Query 1254 AGG 1256 ||| Sbjct 1305 AGG 1307 > Ahg485042 jgi|Araly1|485042|fgenesh2_kg.5__1034__AT3G46690.1 Length=1501 Score = 643 bits (348), Expect = 0.0 Identities = 695/858 (81%), Gaps = 41/858 (5%) Strand=Plus/Plus Query 434 ATCCTGATATGCAAGACAAGGTGGTGGAAAATTTGTATCCATTACGATACAAAGACCTAC 493 ||||||| |||||||||||||| ||||| |||| |||| ||| ||||||||||| ||| Sbjct 530 ATCCTGAAATGCAAGACAAGGTATTGGAAGGTTTGCATCCTTTAAGATACAAAGACTTAC 589 Query 494 CGACTTCAGGAATGGGGCCACTA-GATCGATTTTTTGAGCTCTGTAGGGAAGTAGCCAAC 552 | ||||||||| | || ||| || || | | |||| ||| | ||||||||||||| ||| Sbjct 590 CAACTTCAGGATTTGGACCATTAGGA-CCACTTTTGGAGATGTGTAGGGAAGTAGTTAAC 648 Query 553 AAAAGAACAGCTTCAGCTGTTATCATCAACACGGTGAGCTGTCTAGAGAGCTCGTCTCTG 612 |||||||||||||| ||| |||||||||| || | ||||||||||||||||| |||||| Sbjct 649 AAAAGAACAGCTTCCGCTATTATCATCAATACTGCGAGCTGTCTAGAGAGCTTATCTCTG 708 Query 613 TCATGGCTGGAACAAAAAGTAGGAATTTCTGTGTATC-CATTAGGCCCTCTTCACATGAC 671 ||||||||| ||||| || | |||||| | || || | ||||||||||||||||||| || Sbjct 709 TCATGGCTGCAACAAGAACTTGGAATTCCAGTTTA-CGCATTAGGCCCTCTTCACATTAC 767 Query 672 AGATTCATCACCT---TCTAGTTTACTTG-AAGAGGACAGGAGCTGCATTGAATGGCTGA 727 || |||||| ||| | | ||||| || ||||||||| |||||| |||||||||||| Sbjct 768 AGCTTCATCGCCTGGACCGACTTTAC-TGCAAGAGGACAAGAGCTGTGTTGAATGGCTGA 826 Query 728 ACAAGCAGAAACCAAAGTCAGTGATATACATAAGCATAGGAA-CACTTGGTCAAATGGAA 786 ||||||||||||||| |||||||||||||||| || | |||| || | ||| |||||| Sbjct 827 ACAAGCAGAAACCAAGGTCAGTGATATACATATGCTTGGGAAGCA-AAGCTCACATGGAA 885 Query 787 ACCAAGGAAG-TTTTGGAGATGTCTTGGGGGTTGTGTAATAGCAACCAACCATTTC-TAT 844 |||| || || | || |||||| |||||||||||||||||||||||||||| |||| ||| Sbjct 886 ACCATGG-AGATGTTAGAGATGGCTTGGGGGTTGTGTAATAGCAACCAACC-TTTCTTAT 943 Query 845 GGGTTATCCGAGCGGGTTCTATC-CTTGGC-ACTAACGGAATAGAGTCATTGCCAGAGGA 902 |||| |||||| | || ||| || | |||| | | || || ||||||||||||||||| Sbjct 944 GGGTCATCCGACCTGGCTCTGTCGC-TGGCTCCGAGTGG-ATCGAGTCATTGCCAGAGGA 1001 Query 903 TGTCAATAAAATGGTCTCTGAAAGAGGATACATTGTGAAACGAGCACCGCAGATAGAAGT 962 ||| ||| |||||| || ||||| |||||||||||| | ||||| || |||||||| Sbjct 1002 AATCAGTAAGATGGTCAAAGATAGAGGGTACATTGTGAAATGGGCACCTCAAATAGAAGT 1061 Query 963 ACTTGGACATCCTGCAGTGGGAGGCTTCTGGAGCCACTGTGGATGGAACTCAATACTCGA 1022 ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| || Sbjct 1062 ACTAGGACATCCTGCAGTGGGAGGCTTCTGGAGCCACTGTGGATGGAACTCAACACTTGA 1121 Query 1023 GAGCATTG-GAGAAGGAGTTCCAATGATTTGCAAGCCCTTTC-ATGGCGAGCAAAAGTTG 1080 ||| |||| | |||||||| ||||||||||| | ||| |||| | ||||| || ||||| Sbjct 1122 GAGTATTGCG-GAAGGAGTCCCAATGATTTGTAGGCC-TTTCCAAGGCGAACAGAAGTTA 1179 Query 1081 AATGCAATGTACT-TGGAGTGTGTTTGGAAAATTGGGATTCAAG-TG-GAGGGTGATCTA 1137 ||||||||||| | | || ||||||||| ||| ||||||| | | |||| ||| | Sbjct 1180 AATGCAATGTA-TATAGAAAGTGTTTGGAGAATAGGGATTCT-GCTTCGAGG-TGAAGTG 1236 Query 1138 GAAAGAGGAGCG-GTCGAGAGAGCTGTGAAGAGGTTAA-C--GGTTTTCGAAGAAGGAG- 1192 | |||||| | | || |||||||||||||||||||| | | || | |||||||| | Sbjct 1237 GGAAGAGGCG-GTGTAGAGAGAGCTGTGAAGAGGTTGATCATGGAT---GAAGAAGGTGC 1292 Query 1193 AGGAAATGAGAAAGAGAGC-CGTCACTTTGAAGGAGGAGCTGAGAGCCTCTGTTAGAGGT 1251 ||||| |||| |||| || | | | ||| || ||| |||| | ||||||||| ||| || Sbjct 1293 AGGAA-TGAGGGAGAGGGCTCTTGA-TTTAAAAGAGAAGCTCAAAGCCTCTGTAAGAAGT 1350 Query 1252 GGAGGTTCTTTACACAAC 1269 ||||| || | | ||||| Sbjct 1351 GGAGGCTCCTCATACAAC 1368 Score = 300 bits (162), Expect = 2e-80 Identities = 340/424 (80%), Gaps = 20/424 (5%) Strand=Plus/Plus Query 8 AGAAAATGGAAGCA-AAGAGAAGGATAGTGTTAGTTCCAATTCCAGCACAAGGTCATGTA 66 |||||| || || | ||| ||||||| |||||||||||| || | ||||||||||| || Sbjct 53 AGAAAAGGGCAG-AGAAGCGAAGGATTGTGTTAGTTCCAGTTGCTGCACAAGGTCACGTT 111 Query 67 ACTCCACTGATGCAACTTGGGAAAGTACTT-AACT-CGAAGGGCTTCTCAATTACAGTTG 124 |||| | ||||||| ||||| |||| ||| | | | || |||||||||||||| || | Sbjct 112 ACTCAAATGATGCAGCTTGGAAAAGCCCTTCAGTTAC-AA-GGCTTCTCAATTACTGTAG 169 Query 125 TTGAGGGACATTTCAATCAAGTAAGC-TCTTCTTCTCAACACTTCCCTGGTTTTCAGTTT 183 | || |||| || | ||| ||||| || || || |||| || ||||||||| | ||| Sbjct 170 CTCAGAGACAGTTGACGCAAATAAGCTTC-TCATCGCAACTTTTTCCTGGTTTTGACTTT 228 Query 184 GTCACCATAAAAGAAAGCTTACCAGAGTCTGAATTC-GAGAAACTCGGAGGAATC-GAGT 241 ||||||||| ||| |||||||| |||||||| || ||||||| ||| | | |||| Sbjct 229 GTCACCATACCAGAGAGCTTACCTCAGTCTGAA-TCTAAGAAACTAGGA-CCAGCTGAGT 286 Query 242 CTATGAT-AACGCTCAACAAAACAAGCGAGGCAAGCTTCAAGGACTGTATAAGTCAGTTG 300 | |||| || ||| ||||||||||||||||||||||||||||| |||||||||||||| Sbjct 287 ATCTGATGAA-GCTTAACAAAACAAGCGAGGCAAGCTTCAAGGAGTGTATAAGTCAGTTA 345 Query 301 TTGCTACAACAAGGCAATGATATTGCATGTATCATTTACGACGAG-TACATGTACTTCTG 359 ||| | ||||||||||||||||| ||||||||||| || ||| || | |||||||| || Sbjct 346 TTGATGCAACAAGGCAATGATATAGCATGTATCATCTATGACAAGCTT-ATGTACTTTTG 404 Query 360 TGGAGCTGCAGCTAAGGAGTTCA-GCATTCCTAGTGTCATATTCAGCACTCAA-AGTGCT 417 | |||||||||||| ||||| | || ||||||||||||||||||| ||| | |||||| Sbjct 405 TCAAGCTGCAGCTAAAGAGTTTAAGC-TTCCTAGTGTCATATTCAGTACT-AGCAGTGCT 462 Query 418 GCAA 421 ||| Sbjct 463 ACAA 466 > Ahg897494 jgi|Araly1|897494|Al_scaffold_0005_1460 Length=1356 Score = 501 bits (271), Expect = 5e-141 Identities = 596/747 (80%), Gaps = 46/747 (6%) Strand=Plus/Plus Query 434 ATCCTGA-TATGCAAGACAAGGTGGTGGAAAATTTGTATCCATTACGATACAAAGACCTA 492 ||||||| | ||||| ||||||| |||||||| ||| ||||| || | | |||||||||| Sbjct 479 ATCCTGACT-TGCAAAACAAGGTAGTGGAAAACTTGCATCCAGTAAGTTTCAAAGACCTA 537 Query 493 CCGACTT-CAGGAATGGGGCCACTAGATCGATTTTTTGAGCTCTGTAGGGAAGTAGCCAA 551 || | || |||| | | ||||||||| ||||||| | ||||||||||||| || || Sbjct 538 CC-AATTGGAGGATTTGAGCCACTAGAGAGATTTTTGGTGCTCTGTAGGGAAATAATCAC 596 Query 552 CAAAAGAACAGCTTCAGCTGTTATCATCAACACGGTGAGCTGTCTAGAGAGCTCGTCTCT 611 ||||||| |||||| | || |||||||||||||||||||||| |||||||||||||||| Sbjct 597 CAAAAGATCAGCTTGTGGTGCTATCATCAACACGGTGAGCTGTTTAGAGAGCTCGTCTCT 656 Query 612 GTCATGGCTGGAACAAAAAGTAGGAATTTCTGTGTATCCATTAGGCCCTCTTCACATGAC 671 | ||| |||| ||||| || | |||||| | ||||||||||| || |||||||| || || Sbjct 657 GACATTGCTGCAACAAGAATTTGGAATTCCAGTGTATCCATTGGGTCCTCTTCATATTAC 716 Query 672 AGATTCATCACCTTCTAGTTTACTTGAAGAGGACAGGAGCTGCATTGAATGGCTGAACAA 731 | | | | | ||||||||||| ||||| ||||||||||||||||||||||||||||| Sbjct 717 TGCTAAAGAAACGTCTAGTTTACTGGAAGAAGACAGGAGCTGCATTGAATGGCTGAACAA 776 Query 732 GCAGAAACCAAAGTCAGTGATATACATAAGCATAGGAA-CAC-TTGGTCAAATGGAAACC 789 ||||||||||| |||||| |||||||||||||| |||| || || | || | | ||||| Sbjct 777 GCAGAAACCAAGGTCAGTCATATACATAAGCATGGGAAGCATATTTGACATA-G-AAACC 834 Query 790 AAGGAAGTTTTGGAGATGTCTTGGGGGTTGTGTAATAGCAACCAACCATTTCT-ATGGGT 848 || ||||||||||| ||| || || |||||| ||||||||||||| ||||| |||||| Sbjct 835 AAAGAAGTTTTGGAAATGGCTAATGGATTGTGTGATAGCAACCAACC-TTTCTTATGGGT 893 Query 849 TATCCGAGCGGGTTCTATCCTTGGCACTAACGGAATAGAGTCATTGCCAGAGGATGTCAA 908 |||||| | ||||| | | | | ||||||||||||| |||| Sbjct 894 CATCCGACCTGGTTC---C------A--AGC----------CATTGCCAGAGGAAGTCAG 932 Query 909 TAAAATGGTCTCTGAAAGAGGATACATTGTGAAACGAGCACCGCAGATAGAAGTACTTGG 968 |||||||||||| |||| ||||| |||||||||| | |||||||| | | | | | | Sbjct 933 TAAAATGGTCTCAGAAAAAGGATTCATTGTGAAATGGGCACCGCA-A-A-ATG--C--G- 984 Query 969 ACATCCTGCAGTGGGAGGCTTCTGGAGCCACTGTGGATGGAACTCAATACTCGAGAGCAT 1028 ||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||| || Sbjct 985 -CATCCTGCAGTGGGAGGTTTCTGGAGCCACTGTGGATGGAACTCAACACTGGAGAGTAT 1043 Query 1029 TGGAGAAGGAGTTCCAATGATTTGCAAGCCCTTTCATGGCGAGCAAAAGTTGAATGCAAT 1088 || |||||||||||||||||| || | ||| ||| | || ||||| ||||| || ||| | Sbjct 1044 TGCAGAAGGAGTTCCAATGATCTGTAGGCCTTTTAACGGTGAGCAGAAGTTAAACGCATT 1103 Query 1089 GTACT-TGGAGTGTGTTTGGAAAATTGGGATTCAAG-TGGAGGGTGATCTAGAAAGAGGA 1146 ||| | | || ||||||||| ||| ||||||| | | | ||||| | ||||||||| Sbjct 1104 GTA-TATAGAAAGTGTTTGGAGAATAGGGATTCT-GCTTCAAGGTGAAGTGGAAAGAGGA 1161 Query 1147 GCG-GTCGAGAGAGCTGTGAAGAGGTT 1172 | | ||||||||||||||||| ||||| Sbjct 1162 G-GTGTCGAGAGAGCTGTGAAAAGGTT 1187 > Ahg485040 jgi|Araly1|485040|fgenesh2_kg.5__1032__AT3G46670.1 Length=1588 Score = 490 bits (265), Expect = 1e-137 Identities = 609/772 (79%), Gaps = 36/772 (5%) Strand=Plus/Plus Query 559 ACAGCTTCAGCTGTTATCATCAACACGGTGAGCTGTCTAGAGAGCTCGTCTCTGTCAT-G 617 |||||||| |||| || |||||||| | |||||||||||||||||| |||||||| | | Sbjct 779 ACAGCTTCCTCTGTGATAATCAACACTGCGAGCTGTCTAGAGAGCTCATCTCTGTC-TCG 837 Query 618 GCTGGAACAAAAAG-TAGGAATTTCTGTGTATCCAT-TAGGCCCTCTTCACATGACAGAT 675 ||| ||| || || || |||| | ||||||| | |||||||| ||||| || | Sbjct 838 CCTGCAAC-AACAGCTAAAAATTCCAATGTATCC-TATAGGCCCTGTTCACCTGGTGGCC 895 Query 676 TC-ATCACCTTCTAGTTTACTTGAAGAGGACAGGAGCTGCATTGAATGGCTGAACAAGCA 734 || | | ||| | ||| | ||||||||| ||| |||||| || |||||| ||||||| || Sbjct 896 TCGA-CTCCTACAAGTCTGCTTGAAGAGAACAAGAGCTGTATCGAATGGTTGAACAAACA 954 Query 735 GAAA-CCAAAGTCAGTGATATACATAAGCATAGGAACACTT-GGTCAAATGGAAACCAAG 792 ||| ||| || || |||| | ||||| | |||| ||| | | ||||||| ||| Sbjct 955 -AAAGAAAAATTCTGTAATATTCGTAAGCTTGGGAA-GCTTAGCTTTGATGGAAATCAAT 1012 Query 793 GAAGTTTTGGAGA-TGTCTTGGGGGTTGTG-TAATAGCAACCAACCATTTC-TATGGGTT 849 || || |||||| || ||| ||| ||| | || |||||||||| || ||| | ||||| Sbjct 1013 GAGGTGATGGAGACTG-CTTTGGGATTG-GATAGTAGCAACCAA-CAGTTCTTGTGGGTG 1069 Query 850 ATCCGAG-CGGGTTCTA-TCCTTGGCACTA-ACGGAATAGAGTCA-TTGCC-AGAGGATG 904 || || | | || || | | | ||| ||| | || |||||| | ||||| | |||| | Sbjct 1070 ATTCG-GCCAGGATC-AGTACGTGGTTCTACATGG-ATAGAG-AACTTGCCTA-AGGA-G 1123 Query 905 -TCAATAAAATGGTCTCTGAAAGAGGATACATTGTGAAACGAGCACCGCAGATA-GAAGT 962 | | ||| || | || | | || |||||||||||| | || || |||| | ||||| Sbjct 1124 TTTAGTAAGATAATTTCGGGTCGGGGTTACATTGTGAAATGGGCTCCACAGA-AGGAAGT 1182 Query 963 ACTTGGACATCCTGCAGTGGGAGGCTTCTGGAGCCACTGTGGATGGAACTCAATACTCGA 1022 |||| || |||||||| ||||| || ||||||||||||||||||||||| | ||| || Sbjct 1183 ACTTTCTCACCCTGCAGTAGGAGGGTTTTGGAGCCACTGTGGATGGAACTCGACACTAGA 1242 Query 1023 GAGCATTGGAGAAGGAGTTCCAATGATTTGCAAGCC-CTTT-CATGGCGAGCAAAAGTTG 1080 |||||| || |||||||||||||||||||||||||| ||| || | || |||||| || Sbjct 1243 GAGCATCGGGGAAGGAGTTCCAATGATTTGCAAGCCGTTTTCCA--GTGATCAAAAGGTG 1300 Query 1081 AATGCAATGTACTTGGAGTGTGTTTGGAAAATTGGGATTCAAGTGGAGGGTGATCTAGAA 1140 ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1301 AATGCGAGGTACTTGGAGTGTGTTTGGAAAATTGGGATTCAAGTGGAGGGTGATCTAGAC 1360 Query 1141 AGAGGAGCGGTCGAGAGAGCTGTGAAGAGGTTAACGGTTTTCGAAGAAGGAGAGGAAATG 1200 |||||||| ||||||| ||||||| ||||||||| ||| ||||||||| |||| ||| Sbjct 1361 AGAGGAGCAGTCGAGAAAGCTGTGCAGAGGTTAATGGTGGAGGAAGAAGGAAAGGAGATG 1420 Query 1201 AGAAAGAGAGCCGTCACTTTGAAGGAGGAGCTGAGAGCCTCTGTTAGAGGTGGAGGTTCT 1260 || ||||||| |||| |||||| ||| | || ||||||||||||| | ||||||||||| Sbjct 1421 AGGAAGAGAGTTGTCAGTTTGAAAGAGCAACTTAGAGCCTCTGTTATAAGTGGAGGTTCT 1480 Query 1261 TTACACAACTCGCTAAAGGAGTTTGAACACTTCATGATGACTCTATGAAGAC 1312 | ||||||||||||| ||||||||| ||||||||||| |||||| ||||||| Sbjct 1481 TCACACAACTCGCTAGAGGAGTTTGTACACTTCATGAGGACTCTCTGAAGAC 1532 > Ahg897491 jgi|Araly1|897491|Al_scaffold_0005_1457 Length=1299 Score = 444 bits (240), Expect = 9e-124 Identities = 359/414 (87%), Gaps = 18/414 (4%) Strand=Plus/Plus Query 13 ATGGAAGCAAAGAGAAGGATAGTGTTAGTTCCAATTCCAGCACAAGGTCATGTAACTCCA 72 |||||||| ||||||||||| ||||| |||||| |||||||||||||||| ||||||||| Sbjct 1 ATGGAAGCGAAGAGAAGGATCGTGTTGGTTCCAGTTCCAGCACAAGGTCACGTAACTCCA 60 Query 73 CTGATGCAACTTGGGAAAGTACTTAACTCGAAGGGCTTCTCAATTACAGTTGTTGAGGGA 132 ||||||| ||||| |||| || |||| ||||||||||||||||||||||||||||||| Sbjct 61 ATGATGCAGCTTGGAAAAGCCCTGAACTTGAAGGGCTTCTCAATTACAGTTGTTGAGGGA 120 Query 133 CATTTCAATCAA-GTAAGCTCTTCTTCTCAACACTTCCCTGGTTTTCAGTTTGTCACCAT 191 || ||||| ||| |||||||||||||||||| |||| ||||||||| | ||||| ||||| Sbjct 121 CAATTCAA-CAAAGTAAGCTCTTCTTCTCAAAACTTTCCTGGTTTTGAATTTGTTACCAT 179 Query 192 A--AAAGAAAGCTTACCAGAGTCTGAA-TTCGAGAAACTCGGAG-GAATCGAGTCTATGA 247 | ||||| ||||||||||||||| | || |||| ||||||| || |||||| | ||| Sbjct 180 ACCAAAGA--GCTTACCAGAGTCTGTACTT-GAGAGACTCGGACCGA-TCGAGTTTTTGA 235 Query 248 TA-ACGCTCAACAAAACAAGCGAGGCAAGCTTCAAGGACTGTATAAG-TCAGTTGTTGCT 305 || | |||||||||||| || |||||||| ||||||||||||||| | |||||||||||| Sbjct 236 TAGA-GCTCAACAAAACCAGTGAGGCAAGTTTCAAGGACTGTATA-GCTCAGTTGTTGCT 293 Query 306 ACAACAAGGCAATGATATTGCATGTATCATTTACGACGAGTACATGTACTTCTGTGGAGC 365 |||||||| ||||||||||| |||||||| |||||||| | ||||||||||| ||| || Sbjct 294 GCAACAAGGAAATGATATTGCTTGTATCATCTACGACGAATTCATGTACTTCTCTGGTGC 353 Query 366 TGCAGCTAAGGAGTTCA-GCATTCCTAGTGTCATATTCAGCACT-CAAAGTGCT 417 ||||||||||||||||| | ||||| ||| |||| ||||||||| ||| ||||| Sbjct 354 TGCAGCTAAGGAGTTCAAG-ATTCCCAGTTTCATCTTCAGCACTTCAA-GTGCT 405 Score = 231 bits (125), Expect = 8e-60 Identities = 256/319 (80%), Gaps = 9/319 (3%) Strand=Plus/Plus Query 955 ATAGAAGTACTTGGACATCCT-GCAGTGGGAGGCTTCTGGAGCCACTGTGGATGGAACTC 1013 |||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||| Sbjct 947 ATAG-AGTACTTGGACAT-CTCGCAGTGGGAGGCTTCTGGAGCCACTGTGGATGGAACTC 1004 Query 1014 AATACTCGAGAGCATTG-GAGAAGGAGTTCCAATGATTTGCAAGCCCTTTC-ATGGCGAG 1071 || |||||| ||||||| | ||||||||||||||||| |||| ||| |||| | || ||| Sbjct 1005 AACACTCGAAAGCATTGTG-GAAGGAGTTCCAATGATCTGCAGGCC-TTTCGACGGGGAG 1062 Query 1072 CAAAAGTTGAATGCAATGTACTTG-GAGTGTGTTTGGAAAATTGGGATTCAAGTGGAGGG 1130 |||||||| || | | ||| ||| ||| || |||||| ||| ||| |||| ||| | | Sbjct 1063 CAAAAGTTAAACGTACTGT-CTTTAGAGAGTATTTGGAGAATAGGGTTTCAGGTGCAAAG 1121 Query 1131 TGATCTAGAAAGAGGAGCGGTCGAGAGAGCTGTGAAGAGGTTAACGGTTTTCGAAGAAGG 1190 ||| |||||||||||| ||||||||||||||||||||| || | ||| ||||| || Sbjct 1122 TGAGGTAGAAAGAGGAGGGGTCGAGAGAGCTGTGAAGAGATTGATTGTTGAAGAAGATGG 1181 Query 1191 AGAGGAAATGAGAAAGAGAGCCGTCACTTTGAAGGAGGAGCTGAGAGCCTCTGTTAGAGG 1250 | ||||||| |||||||| | ||| || ||| | || | |||| |||| ||| | Sbjct 1182 TGCCAAAATGAGGGAGAGAGCCCTTTTTTTAAAAGAGAATCTCAAAGCCGCTGTAAGAAG 1241 Query 1251 TGGAGGTTCTTTACACAAC 1269 |||||| || | | ||||| Sbjct 1242 TGGAGGCTCCTCATACAAC 1260 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52945440550 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5