BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G46650.1
Length=1416
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485039 jgi|Araly1|485039|fgenesh2_kg.5__1031__AT3G46650.1 1598 0.0
Ahg347758 jgi|Araly1|347758|fgenesh1_pg.C_scaffold_5001150 752 0.0
Ahg897487 jgi|Araly1|897487|Al_scaffold_0005_1453 669 0.0
Ahg485042 jgi|Araly1|485042|fgenesh2_kg.5__1034__AT3G46690.1 643 0.0
Ahg897494 jgi|Araly1|897494|Al_scaffold_0005_1460 501 5e-141
Ahg485040 jgi|Araly1|485040|fgenesh2_kg.5__1032__AT3G46670.1 490 1e-137
Ahg897491 jgi|Araly1|897491|Al_scaffold_0005_1457 444 9e-124
> Ahg485039 jgi|Araly1|485039|fgenesh2_kg.5__1031__AT3G46650.1
Length=1301
Score = 1598 bits (865), Expect = 0.0
Identities = 1071/1171 (91%), Gaps = 12/1171 (1%)
Strand=Plus/Plus
Query 8 AGAAAATGGAAGCAAAGAGAAGGATAGTGTTAGTTCCAATTCCAGCACAAGGTCATGTAA 67
||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 1 AGAAAATGGAAGCCAAGAGAAGGATAGTGTTAGTTCCAGTTCCAGCACAAGGTCATGTTA 60
Query 68 CTCCACTGATGCAACTTGGGAAAGTACTTAACTCGAAGGGCTTCTCAATTACAGTTGTTG 127
||||| |||||||||||||||||| ||| ||||| ||||||||||||||||||||||||
Sbjct 61 CTCCAATGATGCAACTTGGGAAAGCCCTTTACTCGGAGGGCTTCTCAATTACAGTTGTTG 120
Query 128 AGGGACATTTCAATCAAGTAAGCTCTTCTTCTCAACACTTCCCTGGTTTTCAGTTTGTCA 187
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGGGACACTTCAATCAAGTAAGCTCTTCTTCTCAACACTTCCCTGGTTTTCAGTTTGTCA 180
Query 188 CCATAAAAGAAAGCTTACCAGAGTCTGAATTCGAGAAACTCGGAGGAATCGAGTCTATGA 247
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 181 CCATAAAAGAAAGCTTACCAGAGTCTGAATTCGAGAGACTCGGAGGAATCGAGTTTATGA 240
Query 248 TAACGCTCAACAAAACAAGCGAGGCAAGCTTCAAGGACTGTATAAGTCAGTTGTTGCTA- 306
||| |||||||||||| || ||||||||||||||||||||||||||||||||||||| |
Sbjct 241 TAAAGCTCAACAAAACCAGTGAGGCAAGCTTCAAGGACTGTATAAGTCAGTTGTTGC-AG 299
Query 307 CAACAAGGCAATGATATTGCATGTATCATTTACGACGAGTACATGTACTTCTGTGGAGCT 366
||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||| |||
Sbjct 300 CAACAAGGCAATGATATAGCATGTATCATCTACGACGAGTTCATGTACTTCTGTGGTGCT 359
Query 367 GCAGCTAAGGAGTTCAG-CATTCCTAGTGTCATATTCAGCACT-CAAAGTGCTGCAAATT 424
|||||||| ||||||| | |||| |||||||| |||| |||| ||| ||||| |||||
Sbjct 360 GCAGCTAAAGAGTTCAAAC-TTCCCAGTGTCATCTTCAACACTACAA-GTGCTACAAATC 417
Query 425 ACGTTTCACATCCTGATATGCAAGACAAGGTGGTGGAAAATTTGTATCCATTACGATACA 484
| ||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 418 AAGTTTCTCATCCTGAAATGCAAGACAAAGTGGTGGAAAATTTGTATCCATTACGATACA 477
Query 485 AAGACCTACCGACTTCAGGAATGGGGCCACTAGATCGATTTTTTGAGCTCTGTAGGGAAG 544
|||||||||| | ||||| ||||||||||||||||||| |||||||||||||||| ||||
Sbjct 478 AAGACCTACCTATTTCAGAAATGGGGCCACTAGATCGAGTTTTTGAGCTCTGTAGAGAAG 537
Query 545 TAGCCAACAAAAGAACAGCTTCAGCTGTTATCATCAACACGGTGAGCTGTCTAGAGAGCT 604
||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 538 TAGGCAACAAAAGAACAGCTTCTGGTGTTATCATCAACACGGTGAGCTGTCTAGAGAGCT 597
Query 605 CGTCTCTGTCATGGCTGGAACAAAAAGT-AGGAATTTCTGTGTATCCATTAGGCCCTCTT 663
||||| ||||||||||| ||||| |||| || |||| | |||| ||||||||||||||||
Sbjct 598 CGTCTTTGTCATGGCTGCAACAAGAAGTCAG-AATTCCAGTGTCTCCATTAGGCCCTCTT 656
Query 664 CACATGACAGATTCATCACCTTCTAGTTTACTTGAAGAGGACAGGAGCTGCATTGAATGG 723
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 CACATGACAGCTTCACCACCTTCTAGTTTACTTGAAGAGGACAGGAGCTGCATTGAATGG 716
Query 724 CTGAACAAGCAGAAACCAAAGTCAGTGATATACATAAGCATAGGAACACTTGGTCAAATG 783
||||||||||||||||| | |||||| ||||| |||||| ||||||||||||||||||||
Sbjct 717 CTGAACAAGCAGAAACCGAGGTCAGTCATATATATAAGCGTAGGAACACTTGGTCAAATG 776
Query 784 GAAACCAAGGAAGTTTTGGAGATGTCTTGGGGGTTGTGTAATAGCAACCAACCATTTCTA 843
|||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||| ||
Sbjct 777 GAAACCAAGGAAGTGTTGGAGATGGCTTGGGGGTTGTGTAATAGCAACCAACCGTTTTTA 836
Query 844 TGGGTTATCCGAGCGGGTTCTATCCTTGGCACTAACGGAATAGAGTCATTGCCAGAGGA- 902
|||||||||||||||||||| |||||||||| |||||| ||||| ||||||||||| ||
Sbjct 837 TGGGTTATCCGAGCGGGTTCCATCCTTGGCATTAACGGTATAGATTCATTGCCAGATGAA 896
Query 903 TGTCAATAAAATGGTCTCTGAAAGAGGATACATTGTGAAACGAGCACCGCAGATAGAAGT 962
| ||||||| |||||||| |||| |||||||||||||||||| |||||||||||||||||
Sbjct 897 T-TCAATAAGATGGTCTCAGAAATAGGATACATTGTGAAACGGGCACCGCAGATAGAAGT 955
Query 963 ACTTGGACATCCTGCAGTGGGAGGCTTCTGGAGCCACTGTGGATGGAACTCAATACTCGA 1022
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 956 ACTAGGACATCCTGCAGTGGGAGGCTTCTGGAGCCACTGTGGATGGAACTCAACACTCGA 1015
Query 1023 GAGCATTGGAGAAGGAGTTCCAATGATTTGCAAGCCCTTTCATGGCGAGCAAAAGTTGAA 1082
|||||||||||||||||| ||||||||||||| ||| |||||||| ||||||||||||||
Sbjct 1016 GAGCATTGGAGAAGGAGTGCCAATGATTTGCAGGCCTTTTCATGGGGAGCAAAAGTTGAA 1075
Query 1083 TGCAATGTAC-TTGGAGTGTGTTTGGAAAATTGGGATTCAAGTGGAGGGTGATCTAGAAA 1141
|||||||| ||| | | ||||||| ||| ||| |||| ||||| ||| | | || |
Sbjct 1076 CGCAATGTATATTGAAA-GAGTTTGGAGAATAGGGTTTCAGGTGGAAGGTAAAGTGGATA 1134
Query 1142 GAGGAGCGGTCGAGAGAGCTGTGAAGAGGTT 1172
|||||| || |||| |||||||||||||||
Sbjct 1135 GAGGAGAAGTTGAGAAAGCTGTGAAGAGGTT 1165
> Ahg347758 jgi|Araly1|347758|fgenesh1_pg.C_scaffold_5001150
Length=1359
Score = 752 bits (407), Expect = 0.0
Identities = 699/838 (83%), Gaps = 27/838 (3%)
Strand=Plus/Plus
Query 434 ATCCTGATATGCAAGACAAGGTGGTGGAAAATTTGTATCCATTACGATACAAAGACCTAC 493
||||||| ||||||||| ||||| ||||| |||| |||| ||| |||| |||||| |||
Sbjct 482 ATCCTGAAATGCAAGACGAGGTGTTGGAAGGTTTGCATCCTTTAAGATATAAAGACTTAC 541
Query 494 CGACTTCAGGAATGGGGCCACTAGATCGATTTTTTGAGCTCTGTAGGGAAGTAGCCAACA 553
| ||||||||| | |||||| |||| | | |||| ||| | ||| ||||||||| ||||
Sbjct 542 CAACTTCAGGATTTGGGCCATTAGAGCCACTTTTGGAGATGTGTTGGGAAGTAGTTAACA 601
Query 554 AAAGAACAGCTTCAGCTGTTATCATCAACACGGTGAGCTGTCTAGAGAGCTCGTCTCTGT 613
||||||||||||| ||| |||||||||| || | || ||||||||||||| | |||| |
Sbjct 602 AAAGAACAGCTTCCGCTATTATCATCAATACTGCAAGTTGTCTAGAGAGCTTGACTCTTT 661
Query 614 CATGGCTGGAACAAAAAGTAGGAATTTCTGTGTATCCATTAGGCCCTCTTCACATGACAG 673
||||| || ||||| || | |||||| | |||||||||||||||||||||||||| ||||
Sbjct 662 CATGGATGCAACAAGAACTCGGAATTCCAGTGTATCCATTAGGCCCTCTTCACATAACAG 721
Query 674 ATTCA-TCACCT---TCTAGTTTACTTGAAGAGGACAGGAGCTGCATTGAATGGCTGAAC 729
|||| || ||| |||||||||| |||||||||| ||||||| ||||||||||||||
Sbjct 722 CTTCATTC-CCTGGACCTAGTTTACTCGAAGAGGACAAGAGCTGCGTTGAATGGCTGAAC 780
Query 730 AAGCAGAAACCAAAGTCAGTGATATACATAAG-CATAGGAA-CACTTGGTCAAATGGAAA 787
||||||||||||| |||||| ||||| || || | | |||| | |||| |||||||||||
Sbjct 781 AAGCAGAAACCAAGGTCAGTCATATATAT-AGCCTTGGGAAGC-CTTGCTCAAATGGAAA 838
Query 788 CCAAGGAAG-TTTTGGAGATGTCTTGGGGGTTGT-GTAATAGCAACCAACCATTTCTATG 845
||| || || | || |||||| ||||||| |||| | |||||||||||||| ||| ||||
Sbjct 839 CCATGG-AGATGTTAGAGATGGCTTGGGGATTGTCG-AATAGCAACCAACCTTTTTTATG 896
Query 846 GGTTATCCGAGCGGGTTCTATCCTTGGCACTAACGGAATAGAGTCATTGCCAGAGGATGT 905
||| |||||||| ||||||||||||||| | |||| ||||||||||||||||| || |
Sbjct 897 GGTCATCCGAGCAGGTTCTATCCTTGGCTCGGACGGGATAGAGTCATTGCCAGATGAAAT 956
Query 906 CAATAAAATGGTCTCTGAAAGAGGATACATTGTGAAACGAGCACCGCAGATAGAAGTACT 965
|| ||| ||||| || ||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 957 CAGTAAGATGGTATCCGAAAGAGGATACATTGTGAAATGGGCACCGCAGATAGAAGTACT 1016
Query 966 TGGACATCCTGCAGTGGGAGGCTTCTGGAGCCACTGTGGATGGAACTCAATACTCGAGAG 1025
|| ||||||||| |||||||| || ||||||||||||||||||||||||| |||||||||
Sbjct 1017 TGCACATCCTGCTGTGGGAGGGTTTTGGAGCCACTGTGGATGGAACTCAACACTCGAGAG 1076
Query 1026 CATTG-GAGAAGGAGTTCCAATGATTTGCAAGCCCTTTCATGGCGAGCAAAAGTTGAATG 1084
|||| | |||||||||||||||||||||| ||| ||||| ||||| |||||||| ||||
Sbjct 1077 TATTGCG-GAAGGAGTTCCAATGATTTGCAGGCCTTTTCAAGGCGAACAAAAGTTAAATG 1135
Query 1085 CAATGTACT-TGGAGTGTGTTTGGAAAATTGGGATTCAAG--TGGAGGGTGATCTAGAAA 1141
||||||| | | || ||||||||||||| ||||||| || || |||| || | ||||
Sbjct 1136 CAATGTA-TATAGAAAGTGTTTGGAAAATAGGGATTC-AGCTTGAAGGG-GAAGTGGAAA 1192
Query 1142 GAGGAGCGGTCGAGAGAGCTGTGAAGAGGTTAACGGTTT-TCGAAGAAGGAG-AGGAAAT 1199
||||||||||||||||||||||||||||||| | || | ||||| || | ||| | |
Sbjct 1193 GAGGAGCGGTCGAGAGAGCTGTGAAGAGGTTGATTGTGGAT-GAAGATGGCGTAGGTA-T 1250
Query 1200 GAGAAAGAGAGCCGTCACTTTGA-AGGAGGAGCTGAGAGCCTCTGTTAGAGGTGGAGG 1256
||| |||||||| | ||||| || || |||| | ||||||||| ||| |||||||
Sbjct 1251 GAGGGAGAGAGCCTTTGGTTTGAGAG-AGAAGCTCAAAGCCTCTGTAAGAAGTGGAGG 1307
Score = 390 bits (211), Expect = 1e-107
Identities = 347/413 (84%), Gaps = 8/413 (2%)
Strand=Plus/Plus
Query 22 AAGAGAAGGATAGTGTTAGTTCCAATTCCAGCACAAGGTCATGTAACTCCACTGATGCAA 81
|||||||||||| ||||||||||| || | ||||||||||||||||||||| ||||||||
Sbjct 19 AAGAGAAGGATATTGTTAGTTCCAGTTGCTGCACAAGGTCATGTAACTCCAATGATGCAA 78
Query 82 CTTGGGAAAG-TACTTAACTCGAAGGGCTTCTCAATTACAGTTGTTGAGGGACATTTCAA 140
|||||||||| | ||| | || |||||||||||||||||||||| | ||||||| || ||
Sbjct 79 CTTGGGAAAGCT-CTTCAGTCAAAGGGCTTCTCAATTACAGTTGCTCAGGGACAGTTGAA 137
Query 141 TCAAGTAAGCTCTTCTTCTCAACACTTCCCTGGTTTTCAGTTTGTCACCATAAAAGAAAG 200
||| |||||||||| || ||||| || ||||||||||| ||||||||| || ||||||
Sbjct 138 GCAAATAAGCTCTTCATCGCAACATTTTCCTGGTTTTCACTTTGTCACCCTACCAGAAAG 197
Query 201 CTTACCAGAGTCTGAATTCGAGAA-ACTCGGAGGAATCGAGTCTATG-ATAACGCTCAAC 258
||||| |||||||| || | || ||| |||| ||| || | |||| | || |||||||
Sbjct 198 TTTACCTCAGTCTGAA-TCTAAAACACTAGGAGCAATAGAATTTATGAAGAA-GCTCAAC 255
Query 259 AAAACAAGCGAGGCAAGCTTCAAGGACTGTATAAGTCAGTTGTTGCTACAACAAGGCAAT 318
|||||||||||||||||||||||||| ||||||||| |||| ||||| |||||||||| |
Sbjct 256 AAAACAAGCGAGGCAAGCTTCAAGGAGTGTATAAGTAAGTTATTGCTGCAACAAGGCAGT 315
Query 319 GATATTGCATGTATCATTTACGACGAG-TACATGTACTTCTGTGGAGCTGCAGCTAAGGA 377
||||| || |||||||| |||||| || | ||||||||||||| |||||||||||||||
Sbjct 316 GATATAGCTTGTATCATCTACGACAAGCTT-ATGTACTTCTGTGAAGCTGCAGCTAAGGA 374
Query 378 GTTCAGCATTCCTAGTGTCATATTCAGCACTCAAAGTGCTGCAAATTACGTTT 430
||||| ||||| ||| |||| || ||| || |||||| | ||| | ||||
Sbjct 375 GTTCAATATTCCCAGTATCATCTTTAGCTCTTGCAGTGCTACCAATCAAGTTT 427
> Ahg897487 jgi|Araly1|897487|Al_scaffold_0005_1453
Length=1359
Score = 669 bits (362), Expect = 0.0
Identities = 689/843 (82%), Gaps = 37/843 (4%)
Strand=Plus/Plus
Query 434 ATCCTGATA-TGCAAGACAAGGTGGTGGAAAATTTGTATCCATTACGATACAAAGACCTA 492
||||||| | | | ||||||||||||||| |||||| |||||||| |||||||||| ||
Sbjct 482 ATCCTGA-ACTACGAGACAAGGTGGTGGATAATTTGCATCCATTAAGATACAAAGATCT- 539
Query 493 CC-GACTTCAGGA-ATGGGGCCACTAGATCGATTTTTTGAGCTCTGTAGGGAAGTAGCCA 550
|| | ||||| || | |||||| |||| | | || | ||| || || ||||||||| |
Sbjct 540 CCTGCCTTCA-GATTTTGGGCCATTAGAACCAGTTCTGGAGTTCCGTCGGGAAGTAGTTA 598
Query 551 ACAAAAGAACAGCTTCAGCTGTTATCATCAACACGGTGAGCTGTCTAGAGAGCTCGTCTC 610
|||||||||||||||||||| | ||| | |||||| || ||||||||||||| |||||
Sbjct 599 ACAAAAGAACAGCTTCAGCTCTCATCCTTAACACGACCAGGTGTCTAGAGAGCTTGTCTC 658
Query 611 TGTCATGGCTGGAACAAAAAGTAGGAATTTC-TGTGTATC-CATTAGGCCCTCTTCACAT 668
|||||||| || ||||| || | |||| ||| ||||| | |||||||||||||||||||
Sbjct 659 TGTCATGGTTGCAACAAGAACTCGGAA-TTCGAGTGTA-CTCATTAGGCCCTCTTCACAT 716
Query 669 GACAGATTCATCACC---TTCTAGTTTACTTGAAGAGGACAGGAGCTGCATTGAATGGCT 725
|||| |||| |||| ||||||||| | |||||||||| ||||||||||||||||||
Sbjct 717 TACAGCTTCAGCACCAGGATCTAGTTTAGTGGAAGAGGACATGAGCTGCATTGAATGGCT 776
Query 726 GAACAAGCAGAAACCAAAGTCAGTGATATACATAAGCATAGGAA-CACTTGGTCAAATGG 784
|||||| |||||||| | |||||| |||||| ||||||| |||| || | || |||||
Sbjct 777 GAACAATCAGAAACCGAGGTCAGTCATATACGTAAGCATGGGAACCA-TACATCTAATGG 835
Query 785 AAACCAAGGAAGTTTTGGAGATGTCTTGGGGGTTGTGTAATAGCAACCAACCATTTCTAT 844
|| |||||||||| ||||||||| |||||||||||| ||||||||||||||| ||| |||
Sbjct 836 AAGCCAAGGAAGTGTTGGAGATGGCTTGGGGGTTGTTTAATAGCAACCAACCTTTTTTAT 895
Query 845 GGGTTATCCGAG-CGGGTTCTATCCTTGGCACT-AACGGAATAGAGTCATTGCCAGAGGA 902
|||| ||||| | ||||||| |||| |||| | || || ||||||||||||||||| ||
Sbjct 896 GGGTCATCCG-GTCGGGTTCCATCCATGGC-TTCAATGGGATAGAGTCATTGCCAGAAGA 953
Query 903 TGTCAATAAAATGGTCTCT-GAAAGAGGATACATTGTGAAACGA-GCACCGCAGATAGAA 960
||| ||| |||| || | |||||||||||||||||||| | | |||||||||||||||
Sbjct 954 AGTCGGTAAGATGGCCT-TAGAAAGAGGATACATTGTGAAGC-AGGCACCGCAGATAGAA 1011
Query 961 GTACTTGGACATCCTGCAGTGGGAGGCTTCTGGAGCCACTGTGGATGGAACTCAATACTC 1020
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 1012 GTACTTGGACATCCTGCAGTGGGAGGCTTCTGGAGCCATTGTGGATGGAACTCAACACTG 1071
Query 1021 GAGAGCATTG-GAGAAGGAGTTCCAATGATTTGCAAGCCCTTTCATGGCGAGCAAAAGTT 1079
||||| |||| | ||||||||||| |||||||||| ||| ||| |||| ||||| | |||
Sbjct 1072 GAGAGTATTGTG-GAAGGAGTTCCGATGATTTGCAGGCCTTTTAATGGTGAGCAGAGGTT 1130
Query 1080 GAATGCAATGTACT-TGGAGTGTGTTTGGAAAATTGGGATTCAAG-TGGAGGGTGATCTA 1137
|| |||| || | | || |||||||| | |||||||| | | || ||||| |
Sbjct 1131 AAACGCAAAGTT-TATAGAAACTGTTTGGAGTGTAGGGATTCA-GCTCGAAGGTGAAGTG 1188
Query 1138 GAAAGAGGAGCGGTCGAGAGAGCTGTGAAGAGGTTAA-CG-GTTTTCGAAGAAGGAG-AG 1194
|||||||||| ||| |||||||||||||||||||| | || | | |||||||| | ||
Sbjct 1189 GAAAGAGGAGAGGTTGAGAGAGCTGTGAAGAGGTTGATCGTGGAT--GAAGAAGGTGCAG 1246
Query 1195 GAAATGAGAAAGAGAGCCGTCACTT-TGAAGGAGGAGCTGAGAGCCTCTGTTAGAGGTGG 1253
||| |||| |||||||| | || | || ||| |||| | ||||||||| ||| ||||
Sbjct 1247 GAA-TGAGGGAGAGAGCCCTTG-TTCTAAAAGAGAAGCTCAAAGCCTCTGTAAGAAGTGG 1304
Query 1254 AGG 1256
|||
Sbjct 1305 AGG 1307
> Ahg485042 jgi|Araly1|485042|fgenesh2_kg.5__1034__AT3G46690.1
Length=1501
Score = 643 bits (348), Expect = 0.0
Identities = 695/858 (81%), Gaps = 41/858 (5%)
Strand=Plus/Plus
Query 434 ATCCTGATATGCAAGACAAGGTGGTGGAAAATTTGTATCCATTACGATACAAAGACCTAC 493
||||||| |||||||||||||| ||||| |||| |||| ||| ||||||||||| |||
Sbjct 530 ATCCTGAAATGCAAGACAAGGTATTGGAAGGTTTGCATCCTTTAAGATACAAAGACTTAC 589
Query 494 CGACTTCAGGAATGGGGCCACTA-GATCGATTTTTTGAGCTCTGTAGGGAAGTAGCCAAC 552
| ||||||||| | || ||| || || | | |||| ||| | ||||||||||||| |||
Sbjct 590 CAACTTCAGGATTTGGACCATTAGGA-CCACTTTTGGAGATGTGTAGGGAAGTAGTTAAC 648
Query 553 AAAAGAACAGCTTCAGCTGTTATCATCAACACGGTGAGCTGTCTAGAGAGCTCGTCTCTG 612
|||||||||||||| ||| |||||||||| || | ||||||||||||||||| ||||||
Sbjct 649 AAAAGAACAGCTTCCGCTATTATCATCAATACTGCGAGCTGTCTAGAGAGCTTATCTCTG 708
Query 613 TCATGGCTGGAACAAAAAGTAGGAATTTCTGTGTATC-CATTAGGCCCTCTTCACATGAC 671
||||||||| ||||| || | |||||| | || || | ||||||||||||||||||| ||
Sbjct 709 TCATGGCTGCAACAAGAACTTGGAATTCCAGTTTA-CGCATTAGGCCCTCTTCACATTAC 767
Query 672 AGATTCATCACCT---TCTAGTTTACTTG-AAGAGGACAGGAGCTGCATTGAATGGCTGA 727
|| |||||| ||| | | ||||| || ||||||||| |||||| ||||||||||||
Sbjct 768 AGCTTCATCGCCTGGACCGACTTTAC-TGCAAGAGGACAAGAGCTGTGTTGAATGGCTGA 826
Query 728 ACAAGCAGAAACCAAAGTCAGTGATATACATAAGCATAGGAA-CACTTGGTCAAATGGAA 786
||||||||||||||| |||||||||||||||| || | |||| || | ||| ||||||
Sbjct 827 ACAAGCAGAAACCAAGGTCAGTGATATACATATGCTTGGGAAGCA-AAGCTCACATGGAA 885
Query 787 ACCAAGGAAG-TTTTGGAGATGTCTTGGGGGTTGTGTAATAGCAACCAACCATTTC-TAT 844
|||| || || | || |||||| |||||||||||||||||||||||||||| |||| |||
Sbjct 886 ACCATGG-AGATGTTAGAGATGGCTTGGGGGTTGTGTAATAGCAACCAACC-TTTCTTAT 943
Query 845 GGGTTATCCGAGCGGGTTCTATC-CTTGGC-ACTAACGGAATAGAGTCATTGCCAGAGGA 902
|||| |||||| | || ||| || | |||| | | || || |||||||||||||||||
Sbjct 944 GGGTCATCCGACCTGGCTCTGTCGC-TGGCTCCGAGTGG-ATCGAGTCATTGCCAGAGGA 1001
Query 903 TGTCAATAAAATGGTCTCTGAAAGAGGATACATTGTGAAACGAGCACCGCAGATAGAAGT 962
||| ||| |||||| || ||||| |||||||||||| | ||||| || ||||||||
Sbjct 1002 AATCAGTAAGATGGTCAAAGATAGAGGGTACATTGTGAAATGGGCACCTCAAATAGAAGT 1061
Query 963 ACTTGGACATCCTGCAGTGGGAGGCTTCTGGAGCCACTGTGGATGGAACTCAATACTCGA 1022
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 1062 ACTAGGACATCCTGCAGTGGGAGGCTTCTGGAGCCACTGTGGATGGAACTCAACACTTGA 1121
Query 1023 GAGCATTG-GAGAAGGAGTTCCAATGATTTGCAAGCCCTTTC-ATGGCGAGCAAAAGTTG 1080
||| |||| | |||||||| ||||||||||| | ||| |||| | ||||| || |||||
Sbjct 1122 GAGTATTGCG-GAAGGAGTCCCAATGATTTGTAGGCC-TTTCCAAGGCGAACAGAAGTTA 1179
Query 1081 AATGCAATGTACT-TGGAGTGTGTTTGGAAAATTGGGATTCAAG-TG-GAGGGTGATCTA 1137
||||||||||| | | || ||||||||| ||| ||||||| | | |||| ||| |
Sbjct 1180 AATGCAATGTA-TATAGAAAGTGTTTGGAGAATAGGGATTCT-GCTTCGAGG-TGAAGTG 1236
Query 1138 GAAAGAGGAGCG-GTCGAGAGAGCTGTGAAGAGGTTAA-C--GGTTTTCGAAGAAGGAG- 1192
| |||||| | | || |||||||||||||||||||| | | || | |||||||| |
Sbjct 1237 GGAAGAGGCG-GTGTAGAGAGAGCTGTGAAGAGGTTGATCATGGAT---GAAGAAGGTGC 1292
Query 1193 AGGAAATGAGAAAGAGAGC-CGTCACTTTGAAGGAGGAGCTGAGAGCCTCTGTTAGAGGT 1251
||||| |||| |||| || | | | ||| || ||| |||| | ||||||||| ||| ||
Sbjct 1293 AGGAA-TGAGGGAGAGGGCTCTTGA-TTTAAAAGAGAAGCTCAAAGCCTCTGTAAGAAGT 1350
Query 1252 GGAGGTTCTTTACACAAC 1269
||||| || | | |||||
Sbjct 1351 GGAGGCTCCTCATACAAC 1368
Score = 300 bits (162), Expect = 2e-80
Identities = 340/424 (80%), Gaps = 20/424 (5%)
Strand=Plus/Plus
Query 8 AGAAAATGGAAGCA-AAGAGAAGGATAGTGTTAGTTCCAATTCCAGCACAAGGTCATGTA 66
|||||| || || | ||| ||||||| |||||||||||| || | ||||||||||| ||
Sbjct 53 AGAAAAGGGCAG-AGAAGCGAAGGATTGTGTTAGTTCCAGTTGCTGCACAAGGTCACGTT 111
Query 67 ACTCCACTGATGCAACTTGGGAAAGTACTT-AACT-CGAAGGGCTTCTCAATTACAGTTG 124
|||| | ||||||| ||||| |||| ||| | | | || |||||||||||||| || |
Sbjct 112 ACTCAAATGATGCAGCTTGGAAAAGCCCTTCAGTTAC-AA-GGCTTCTCAATTACTGTAG 169
Query 125 TTGAGGGACATTTCAATCAAGTAAGC-TCTTCTTCTCAACACTTCCCTGGTTTTCAGTTT 183
| || |||| || | ||| ||||| || || || |||| || ||||||||| | |||
Sbjct 170 CTCAGAGACAGTTGACGCAAATAAGCTTC-TCATCGCAACTTTTTCCTGGTTTTGACTTT 228
Query 184 GTCACCATAAAAGAAAGCTTACCAGAGTCTGAATTC-GAGAAACTCGGAGGAATC-GAGT 241
||||||||| ||| |||||||| |||||||| || ||||||| ||| | | ||||
Sbjct 229 GTCACCATACCAGAGAGCTTACCTCAGTCTGAA-TCTAAGAAACTAGGA-CCAGCTGAGT 286
Query 242 CTATGAT-AACGCTCAACAAAACAAGCGAGGCAAGCTTCAAGGACTGTATAAGTCAGTTG 300
| |||| || ||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 287 ATCTGATGAA-GCTTAACAAAACAAGCGAGGCAAGCTTCAAGGAGTGTATAAGTCAGTTA 345
Query 301 TTGCTACAACAAGGCAATGATATTGCATGTATCATTTACGACGAG-TACATGTACTTCTG 359
||| | ||||||||||||||||| ||||||||||| || ||| || | |||||||| ||
Sbjct 346 TTGATGCAACAAGGCAATGATATAGCATGTATCATCTATGACAAGCTT-ATGTACTTTTG 404
Query 360 TGGAGCTGCAGCTAAGGAGTTCA-GCATTCCTAGTGTCATATTCAGCACTCAA-AGTGCT 417
| |||||||||||| ||||| | || ||||||||||||||||||| ||| | ||||||
Sbjct 405 TCAAGCTGCAGCTAAAGAGTTTAAGC-TTCCTAGTGTCATATTCAGTACT-AGCAGTGCT 462
Query 418 GCAA 421
|||
Sbjct 463 ACAA 466
> Ahg897494 jgi|Araly1|897494|Al_scaffold_0005_1460
Length=1356
Score = 501 bits (271), Expect = 5e-141
Identities = 596/747 (80%), Gaps = 46/747 (6%)
Strand=Plus/Plus
Query 434 ATCCTGA-TATGCAAGACAAGGTGGTGGAAAATTTGTATCCATTACGATACAAAGACCTA 492
||||||| | ||||| ||||||| |||||||| ||| ||||| || | | ||||||||||
Sbjct 479 ATCCTGACT-TGCAAAACAAGGTAGTGGAAAACTTGCATCCAGTAAGTTTCAAAGACCTA 537
Query 493 CCGACTT-CAGGAATGGGGCCACTAGATCGATTTTTTGAGCTCTGTAGGGAAGTAGCCAA 551
|| | || |||| | | ||||||||| ||||||| | ||||||||||||| || ||
Sbjct 538 CC-AATTGGAGGATTTGAGCCACTAGAGAGATTTTTGGTGCTCTGTAGGGAAATAATCAC 596
Query 552 CAAAAGAACAGCTTCAGCTGTTATCATCAACACGGTGAGCTGTCTAGAGAGCTCGTCTCT 611
||||||| |||||| | || |||||||||||||||||||||| ||||||||||||||||
Sbjct 597 CAAAAGATCAGCTTGTGGTGCTATCATCAACACGGTGAGCTGTTTAGAGAGCTCGTCTCT 656
Query 612 GTCATGGCTGGAACAAAAAGTAGGAATTTCTGTGTATCCATTAGGCCCTCTTCACATGAC 671
| ||| |||| ||||| || | |||||| | ||||||||||| || |||||||| || ||
Sbjct 657 GACATTGCTGCAACAAGAATTTGGAATTCCAGTGTATCCATTGGGTCCTCTTCATATTAC 716
Query 672 AGATTCATCACCTTCTAGTTTACTTGAAGAGGACAGGAGCTGCATTGAATGGCTGAACAA 731
| | | | | ||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 717 TGCTAAAGAAACGTCTAGTTTACTGGAAGAAGACAGGAGCTGCATTGAATGGCTGAACAA 776
Query 732 GCAGAAACCAAAGTCAGTGATATACATAAGCATAGGAA-CAC-TTGGTCAAATGGAAACC 789
||||||||||| |||||| |||||||||||||| |||| || || | || | | |||||
Sbjct 777 GCAGAAACCAAGGTCAGTCATATACATAAGCATGGGAAGCATATTTGACATA-G-AAACC 834
Query 790 AAGGAAGTTTTGGAGATGTCTTGGGGGTTGTGTAATAGCAACCAACCATTTCT-ATGGGT 848
|| ||||||||||| ||| || || |||||| ||||||||||||| ||||| ||||||
Sbjct 835 AAAGAAGTTTTGGAAATGGCTAATGGATTGTGTGATAGCAACCAACC-TTTCTTATGGGT 893
Query 849 TATCCGAGCGGGTTCTATCCTTGGCACTAACGGAATAGAGTCATTGCCAGAGGATGTCAA 908
|||||| | ||||| | | | | ||||||||||||| ||||
Sbjct 894 CATCCGACCTGGTTC---C------A--AGC----------CATTGCCAGAGGAAGTCAG 932
Query 909 TAAAATGGTCTCTGAAAGAGGATACATTGTGAAACGAGCACCGCAGATAGAAGTACTTGG 968
|||||||||||| |||| ||||| |||||||||| | |||||||| | | | | | |
Sbjct 933 TAAAATGGTCTCAGAAAAAGGATTCATTGTGAAATGGGCACCGCA-A-A-ATG--C--G- 984
Query 969 ACATCCTGCAGTGGGAGGCTTCTGGAGCCACTGTGGATGGAACTCAATACTCGAGAGCAT 1028
||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||| ||
Sbjct 985 -CATCCTGCAGTGGGAGGTTTCTGGAGCCACTGTGGATGGAACTCAACACTGGAGAGTAT 1043
Query 1029 TGGAGAAGGAGTTCCAATGATTTGCAAGCCCTTTCATGGCGAGCAAAAGTTGAATGCAAT 1088
|| |||||||||||||||||| || | ||| ||| | || ||||| ||||| || ||| |
Sbjct 1044 TGCAGAAGGAGTTCCAATGATCTGTAGGCCTTTTAACGGTGAGCAGAAGTTAAACGCATT 1103
Query 1089 GTACT-TGGAGTGTGTTTGGAAAATTGGGATTCAAG-TGGAGGGTGATCTAGAAAGAGGA 1146
||| | | || ||||||||| ||| ||||||| | | | ||||| | |||||||||
Sbjct 1104 GTA-TATAGAAAGTGTTTGGAGAATAGGGATTCT-GCTTCAAGGTGAAGTGGAAAGAGGA 1161
Query 1147 GCG-GTCGAGAGAGCTGTGAAGAGGTT 1172
| | ||||||||||||||||| |||||
Sbjct 1162 G-GTGTCGAGAGAGCTGTGAAAAGGTT 1187
> Ahg485040 jgi|Araly1|485040|fgenesh2_kg.5__1032__AT3G46670.1
Length=1588
Score = 490 bits (265), Expect = 1e-137
Identities = 609/772 (79%), Gaps = 36/772 (5%)
Strand=Plus/Plus
Query 559 ACAGCTTCAGCTGTTATCATCAACACGGTGAGCTGTCTAGAGAGCTCGTCTCTGTCAT-G 617
|||||||| |||| || |||||||| | |||||||||||||||||| |||||||| | |
Sbjct 779 ACAGCTTCCTCTGTGATAATCAACACTGCGAGCTGTCTAGAGAGCTCATCTCTGTC-TCG 837
Query 618 GCTGGAACAAAAAG-TAGGAATTTCTGTGTATCCAT-TAGGCCCTCTTCACATGACAGAT 675
||| ||| || || || |||| | ||||||| | |||||||| ||||| || |
Sbjct 838 CCTGCAAC-AACAGCTAAAAATTCCAATGTATCC-TATAGGCCCTGTTCACCTGGTGGCC 895
Query 676 TC-ATCACCTTCTAGTTTACTTGAAGAGGACAGGAGCTGCATTGAATGGCTGAACAAGCA 734
|| | | ||| | ||| | ||||||||| ||| |||||| || |||||| ||||||| ||
Sbjct 896 TCGA-CTCCTACAAGTCTGCTTGAAGAGAACAAGAGCTGTATCGAATGGTTGAACAAACA 954
Query 735 GAAA-CCAAAGTCAGTGATATACATAAGCATAGGAACACTT-GGTCAAATGGAAACCAAG 792
||| ||| || || |||| | ||||| | |||| ||| | | ||||||| |||
Sbjct 955 -AAAGAAAAATTCTGTAATATTCGTAAGCTTGGGAA-GCTTAGCTTTGATGGAAATCAAT 1012
Query 793 GAAGTTTTGGAGA-TGTCTTGGGGGTTGTG-TAATAGCAACCAACCATTTC-TATGGGTT 849
|| || |||||| || ||| ||| ||| | || |||||||||| || ||| | |||||
Sbjct 1013 GAGGTGATGGAGACTG-CTTTGGGATTG-GATAGTAGCAACCAA-CAGTTCTTGTGGGTG 1069
Query 850 ATCCGAG-CGGGTTCTA-TCCTTGGCACTA-ACGGAATAGAGTCA-TTGCC-AGAGGATG 904
|| || | | || || | | | ||| ||| | || |||||| | ||||| | |||| |
Sbjct 1070 ATTCG-GCCAGGATC-AGTACGTGGTTCTACATGG-ATAGAG-AACTTGCCTA-AGGA-G 1123
Query 905 -TCAATAAAATGGTCTCTGAAAGAGGATACATTGTGAAACGAGCACCGCAGATA-GAAGT 962
| | ||| || | || | | || |||||||||||| | || || |||| | |||||
Sbjct 1124 TTTAGTAAGATAATTTCGGGTCGGGGTTACATTGTGAAATGGGCTCCACAGA-AGGAAGT 1182
Query 963 ACTTGGACATCCTGCAGTGGGAGGCTTCTGGAGCCACTGTGGATGGAACTCAATACTCGA 1022
|||| || |||||||| ||||| || ||||||||||||||||||||||| | ||| ||
Sbjct 1183 ACTTTCTCACCCTGCAGTAGGAGGGTTTTGGAGCCACTGTGGATGGAACTCGACACTAGA 1242
Query 1023 GAGCATTGGAGAAGGAGTTCCAATGATTTGCAAGCC-CTTT-CATGGCGAGCAAAAGTTG 1080
|||||| || |||||||||||||||||||||||||| ||| || | || |||||| ||
Sbjct 1243 GAGCATCGGGGAAGGAGTTCCAATGATTTGCAAGCCGTTTTCCA--GTGATCAAAAGGTG 1300
Query 1081 AATGCAATGTACTTGGAGTGTGTTTGGAAAATTGGGATTCAAGTGGAGGGTGATCTAGAA 1140
||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1301 AATGCGAGGTACTTGGAGTGTGTTTGGAAAATTGGGATTCAAGTGGAGGGTGATCTAGAC 1360
Query 1141 AGAGGAGCGGTCGAGAGAGCTGTGAAGAGGTTAACGGTTTTCGAAGAAGGAGAGGAAATG 1200
|||||||| ||||||| ||||||| ||||||||| ||| ||||||||| |||| |||
Sbjct 1361 AGAGGAGCAGTCGAGAAAGCTGTGCAGAGGTTAATGGTGGAGGAAGAAGGAAAGGAGATG 1420
Query 1201 AGAAAGAGAGCCGTCACTTTGAAGGAGGAGCTGAGAGCCTCTGTTAGAGGTGGAGGTTCT 1260
|| ||||||| |||| |||||| ||| | || ||||||||||||| | |||||||||||
Sbjct 1421 AGGAAGAGAGTTGTCAGTTTGAAAGAGCAACTTAGAGCCTCTGTTATAAGTGGAGGTTCT 1480
Query 1261 TTACACAACTCGCTAAAGGAGTTTGAACACTTCATGATGACTCTATGAAGAC 1312
| ||||||||||||| ||||||||| ||||||||||| |||||| |||||||
Sbjct 1481 TCACACAACTCGCTAGAGGAGTTTGTACACTTCATGAGGACTCTCTGAAGAC 1532
> Ahg897491 jgi|Araly1|897491|Al_scaffold_0005_1457
Length=1299
Score = 444 bits (240), Expect = 9e-124
Identities = 359/414 (87%), Gaps = 18/414 (4%)
Strand=Plus/Plus
Query 13 ATGGAAGCAAAGAGAAGGATAGTGTTAGTTCCAATTCCAGCACAAGGTCATGTAACTCCA 72
|||||||| ||||||||||| ||||| |||||| |||||||||||||||| |||||||||
Sbjct 1 ATGGAAGCGAAGAGAAGGATCGTGTTGGTTCCAGTTCCAGCACAAGGTCACGTAACTCCA 60
Query 73 CTGATGCAACTTGGGAAAGTACTTAACTCGAAGGGCTTCTCAATTACAGTTGTTGAGGGA 132
||||||| ||||| |||| || |||| |||||||||||||||||||||||||||||||
Sbjct 61 ATGATGCAGCTTGGAAAAGCCCTGAACTTGAAGGGCTTCTCAATTACAGTTGTTGAGGGA 120
Query 133 CATTTCAATCAA-GTAAGCTCTTCTTCTCAACACTTCCCTGGTTTTCAGTTTGTCACCAT 191
|| ||||| ||| |||||||||||||||||| |||| ||||||||| | ||||| |||||
Sbjct 121 CAATTCAA-CAAAGTAAGCTCTTCTTCTCAAAACTTTCCTGGTTTTGAATTTGTTACCAT 179
Query 192 A--AAAGAAAGCTTACCAGAGTCTGAA-TTCGAGAAACTCGGAG-GAATCGAGTCTATGA 247
| ||||| ||||||||||||||| | || |||| ||||||| || |||||| | |||
Sbjct 180 ACCAAAGA--GCTTACCAGAGTCTGTACTT-GAGAGACTCGGACCGA-TCGAGTTTTTGA 235
Query 248 TA-ACGCTCAACAAAACAAGCGAGGCAAGCTTCAAGGACTGTATAAG-TCAGTTGTTGCT 305
|| | |||||||||||| || |||||||| ||||||||||||||| | ||||||||||||
Sbjct 236 TAGA-GCTCAACAAAACCAGTGAGGCAAGTTTCAAGGACTGTATA-GCTCAGTTGTTGCT 293
Query 306 ACAACAAGGCAATGATATTGCATGTATCATTTACGACGAGTACATGTACTTCTGTGGAGC 365
|||||||| ||||||||||| |||||||| |||||||| | ||||||||||| ||| ||
Sbjct 294 GCAACAAGGAAATGATATTGCTTGTATCATCTACGACGAATTCATGTACTTCTCTGGTGC 353
Query 366 TGCAGCTAAGGAGTTCA-GCATTCCTAGTGTCATATTCAGCACT-CAAAGTGCT 417
||||||||||||||||| | ||||| ||| |||| ||||||||| ||| |||||
Sbjct 354 TGCAGCTAAGGAGTTCAAG-ATTCCCAGTTTCATCTTCAGCACTTCAA-GTGCT 405
Score = 231 bits (125), Expect = 8e-60
Identities = 256/319 (80%), Gaps = 9/319 (3%)
Strand=Plus/Plus
Query 955 ATAGAAGTACTTGGACATCCT-GCAGTGGGAGGCTTCTGGAGCCACTGTGGATGGAACTC 1013
|||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 947 ATAG-AGTACTTGGACAT-CTCGCAGTGGGAGGCTTCTGGAGCCACTGTGGATGGAACTC 1004
Query 1014 AATACTCGAGAGCATTG-GAGAAGGAGTTCCAATGATTTGCAAGCCCTTTC-ATGGCGAG 1071
|| |||||| ||||||| | ||||||||||||||||| |||| ||| |||| | || |||
Sbjct 1005 AACACTCGAAAGCATTGTG-GAAGGAGTTCCAATGATCTGCAGGCC-TTTCGACGGGGAG 1062
Query 1072 CAAAAGTTGAATGCAATGTACTTG-GAGTGTGTTTGGAAAATTGGGATTCAAGTGGAGGG 1130
|||||||| || | | ||| ||| ||| || |||||| ||| ||| |||| ||| | |
Sbjct 1063 CAAAAGTTAAACGTACTGT-CTTTAGAGAGTATTTGGAGAATAGGGTTTCAGGTGCAAAG 1121
Query 1131 TGATCTAGAAAGAGGAGCGGTCGAGAGAGCTGTGAAGAGGTTAACGGTTTTCGAAGAAGG 1190
||| |||||||||||| ||||||||||||||||||||| || | ||| ||||| ||
Sbjct 1122 TGAGGTAGAAAGAGGAGGGGTCGAGAGAGCTGTGAAGAGATTGATTGTTGAAGAAGATGG 1181
Query 1191 AGAGGAAATGAGAAAGAGAGCCGTCACTTTGAAGGAGGAGCTGAGAGCCTCTGTTAGAGG 1250
| ||||||| |||||||| | ||| || ||| | || | |||| |||| ||| |
Sbjct 1182 TGCCAAAATGAGGGAGAGAGCCCTTTTTTTAAAAGAGAATCTCAAAGCCGCTGTAAGAAG 1241
Query 1251 TGGAGGTTCTTTACACAAC 1269
|||||| || | | |||||
Sbjct 1242 TGGAGGCTCCTCATACAAC 1260
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52945440550
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5