BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G46670.1
Length=1732
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485040 jgi|Araly1|485040|fgenesh2_kg.5__1032__AT3G46670.1 2283 0.0
Ahg948088 jgi|Araly1|948088|scaffold_704317.1 832 0.0
Ahg494179 jgi|Araly1|494179|fgenesh2_kg.7__3612__AT5G37950.2 582 2e-165
Ahg347751 jgi|Araly1|347751|fgenesh1_pg.C_scaffold_5001143 363 3e-99
> Ahg485040 jgi|Araly1|485040|fgenesh2_kg.5__1032__AT3G46670.1
Length=1588
Score = 2283 bits (1236), Expect = 0.0
Identities = 1477/1594 (93%), Gaps = 14/1594 (1%)
Strand=Plus/Plus
Query 1 CAAGAAAAACGAAATACAGATGAAACAATGTCCACAAGTCTGAGAATCTGATAT-TTATC 59
|||||| || |||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 1 CAAGAAGAAGGAAATACAGATGAAACAACGTCCACAAGTCTGAGAATCTGATATATTATA 60
Query 60 TC-AGAAACATACTCATTTTAATA-TTCTCATAGATCGGTCACAGGGAAGAAAAGAAATT 117
|| | ||| ||||||||||||| | |||||||||| |||||| | ||||||||||||
Sbjct 61 TCTA-AAAGATACTCATTTTAAGAGATCTCATAGATTGGTCACCGCAAAGAAAAGAAATA 119
Query 118 GGAGGACCAAATTCG-GAAAGCACGAGGCAGAGCAGTTCTTGTAAATTTTCGAAATGGAG 176
||| ||||||| ||| |||| |||| ||||||||||||||| || ||||||||||||||
Sbjct 120 GGAAGACCAAACTCGCGAAA-CACGGGGCAGAGCAGTTCTTCTAGCTTTTCGAAATGGAG 178
Query 177 GAAAAGCCGGCG-GGCAGAAGAGTAGTGTTGGTTGCAGTTCCAGCTCAAGGACATATCTC 235
|||||||||||| || ||||| ||| |||| || |||||||||||||||||||||| ||
Sbjct 179 GAAAAGCCGGCGAGG-AGAAGGGTATTGTTAATTCCAGTTCCAGCTCAAGGACATATATC 237
Query 236 TCCAATAATGCAACTTGCAAAAACACTTCACTTGAAGGGTTTCTCAATCACAATCGCTCA 295
|||||| |||||||| |||||||| ||| |||| |||||||||||||||||||| |||||
Sbjct 238 TCCAATGATGCAACTCGCAAAAACCCTTTACTTAAAGGGTTTCTCAATCACAATTGCTCA 297
Query 296 GACAAAGTTCAATTACTTTAGCCCTTCAGATGACTTCACTGATTTTCAGTTTGTCACCAT 355
||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 298 GACCAAGTTTAATTATTTTAGCCCTTCAGATGACTTCACTGATTTTCAGTTTGTCACTAT 357
Query 356 TCCAGAAAGCTTACCAGAGTCTGATTTTGAGGATCTCGGGCCAATAGAGTTTCTGCATAA 415
||| ||||||||||| |||||||||||| || ||||||||||| |||||||| |||||||
Sbjct 358 TCCGGAAAGCTTACCGGAGTCTGATTTTAAGAATCTCGGGCCAGTAGAGTTTATGCATAA 417
Query 416 GCTCAACAAAGAGTGTCAGGTGAGCTTCAAAGACTGTTTGGGTCAGTTGTTGCTGCAACA 475
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 418 GCTCAACAAAGAGTGTCAGGTGAGCTTTAAAGACTGTTTGGGTCAGTTGTTGCAGCAACA 477
Query 476 AGGTAATGAGATAGCCTGTGTTGTCTACGACGAGTTCATGTACTTTGCTGAAGCTGCAGC 535
|||||||||||| || ||||| ||||| ||||||||| ||||||||||||||||| ||||
Sbjct 478 AGGTAATGAGATCGCATGTGTCGTCTATGACGAGTTCGTGTACTTTGCTGAAGCTACAGC 537
Query 536 CAAAGAGTTTAAGCTTCCAAACGTCATTTTCAGCACCACAAGTGCCACGGCTTTTGTTTG 595
|||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 538 CAAAGAGTATAAGCTTCCAAACGTTATTTTCAGCACAACAAGTGCCACGGCTTTTGTTTG 597
Query 596 CCGCTCTGCATTCGACAAACTTTATGCAAACAGTATCCTGACTCCCTTGAAAGAACCCAA 655
||||||| |||||||||||| |||||||||| | || || |||||||||||||||||||
Sbjct 598 TCGCTCTGTATTCGACAAACTCTATGCAAACAATGTCTTGTCTCCCTTGAAAGAACCCAA 657
Query 656 AGGACAACAAAACGAGCTAGTGCCAGAGTTTCATCCCCTGAGATGCAAAGACTTTCCGGT 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 AGGACAACAAAACGAGCTAGTGCCAGAGTTTCATCCCCTGAGATGCAAAGACTTTCCGGT 717
Query 716 TTCACATTGGGCATCATTAGAAAGCATGATGGAGCTGTATAGGAATACAGTTGACAAACG 775
|||||||||||||||||||||||| || ||||| |||||||||||||||||||||| |||
Sbjct 718 TTCACATTGGGCATCATTAGAAAGTATAATGGAACTGTATAGGAATACAGTTGACACACG 777
Query 776 GACAGCTTCCTCGGTGATAATCAACACAGCGAGCTGTCTAGAGAGCTCATCTCTGTCTCG 835
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 778 GACAGCTTCCTCTGTGATAATCAACACTGCGAGCTGTCTAGAGAGCTCATCTCTGTCTCG 837
Query 836 TCTGCAGCAACAGCTACAAATTCCAGTTTATCCTATAGGCCCTCTTCACCTGGTGGCATC 895
||||| ||||||||| |||||||| | ||||||||||||||| ||||||||||||| ||
Sbjct 838 CCTGCAACAACAGCTAAAAATTCCAATGTATCCTATAGGCCCTGTTCACCTGGTGGCCTC 897
Query 896 -AGCTTCTACGAGTCTTCTTGAAGAGAACAAGAGCTGTATTGAATGGTTGAACAAACAAA 954
| || |||| ||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 898 GA-CTCCTACAAGTCTGCTTGAAGAGAACAAGAGCTGTATCGAATGGTTGAACAAACAAA 956
Query 955 AGAAAAACTCTGTGATATTCGTAAGCTTGGGAAGCTTAGCTTTGATGGAAATCAATGAGG 1014
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 AGAAAAATTCTGTAATATTCGTAAGCTTGGGAAGCTTAGCTTTGATGGAAATCAATGAGG 1016
Query 1015 TGATAGAAACTGCTTTGGGATTGGATAGTAGCAAGCAACAGTTCTTGTGGGTCATTCGGC 1074
|||| || |||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1017 TGATGGAGACTGCTTTGGGATTGGATAGTAGCAACCAACAGTTCTTGTGGGTGATTCGGC 1076
Query 1075 CAGGGTCAGTACGTGGTTCGGA-ATGGATAGAGAACTTGCCTAAGGAGTTTAGTAAGATA 1133
|||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 1077 CAGGATCAGTACGTGGTTCT-ACATGGATAGAGAACTTGCCTAAGGAGTTTAGTAAGATA 1135
Query 1134 ATTTCGGGTCGAGGTTACATTGTGAAATGGGCTCCACAGAAGGAAGTACTTTCTCATCCT 1193
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1136 ATTTCGGGTCGGGGTTACATTGTGAAATGGGCTCCACAGAAGGAAGTACTTTCTCACCCT 1195
Query 1194 GCAGTAGGAGGATTTTGGAGCCATTGCGGATGGAACTCGACACTAGAGAGCATCGGGGAA 1253
||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1196 GCAGTAGGAGGGTTTTGGAGCCACTGTGGATGGAACTCGACACTAGAGAGCATCGGGGAA 1255
Query 1254 GGAGTTCCAATGATTTGCAAGCCGTTTTCCAGTGATCAAATGGTGAATGCGAGATACTTG 1313
|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 1256 GGAGTTCCAATGATTTGCAAGCCGTTTTCCAGTGATCAAAAGGTGAATGCGAGGTACTTG 1315
Query 1314 GAGTGTGTATGGAAAATTGGGATTCAAGTTGAGGGTGATCTAGACAGAGGAGCGGTCGAG 1373
|||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1316 GAGTGTGTTTGGAAAATTGGGATTCAAGTGGAGGGTGATCTAGACAGAGGAGCAGTCGAG 1375
Query 1374 AGAGCTGTG-AGGAGGTTAATGGTGGAGGAAGAAGGGGAGGGGATGAGGAAGAGAGCTAT 1432
| ||||||| || ||||||||||||||||||||||| ||| |||||||||||||| | |
Sbjct 1376 AAAGCTGTGCAG-AGGTTAATGGTGGAGGAAGAAGGAAAGGAGATGAGGAAGAGAGTTGT 1434
Query 1433 CAGTTTGAAAGAGCAACTTAGAGCCTCTGTTATAAGTGGAGGTTCTTCACACAACTCGCT 1492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1435 CAGTTTGAAAGAGCAACTTAGAGCCTCTGTTATAAGTGGAGGTTCTTCACACAACTCGCT 1494
Query 1493 AGAGGAGTTTGTACACTACATGAGGACTCTATGAAGACTTTTGTCTTTACTAAAACACCA 1552
||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||
Sbjct 1495 AGAGGAGTTTGTACACTTCATGAGGACTCTCTGAAGACTTTTGTCTATACTAAAACACCA 1554
Query 1553 AAACTTCAAGATTCCTCTTTCAACTATTCCAAGT 1586
|||||| |||||||||||||||||||||||||||
Sbjct 1555 AAACTTGAAGATTCCTCTTTCAACTATTCCAAGT 1588
> Ahg948088 jgi|Araly1|948088|scaffold_704317.1
Length=1393
Score = 832 bits (450), Expect = 0.0
Identities = 1080/1372 (79%), Gaps = 92/1372 (7%)
Strand=Plus/Plus
Query 160 AAATTTTCGAAATGGAGGAAAAGC-CG-GCGG-GCAGAA-GAGTAGTGTTGGTTGCAGTT 215
||| ||| |||||||||||||||| | | || | |||| || | |||||| || ||| |
Sbjct 13 AAA-TTTGGAAATGGAGGAAAAGCAAGAGAGGAGGAGAAGGA-TCGTGTTGATTCCAGCT 70
Query 216 CCAGCTCAAGGACATATCTCTCCAATAATGCAACTTGCAAAAACACTTCACTTGAAGGGT 275
||||| |||||||| || |||||||| |||||||| || | | | |||||||| ||||||
Sbjct 71 CCAGCACAAGGACACATATCTCCAATGATGCAACTCGCGAGAGCCCTTCACTTAAAGGGT 130
Query 276 TTCTCAATCACAATCGCTCAGACAAAGTTCAATTACTT-TAGCCCTTCAGATGACTTCA- 333
||||| || || | |||||||| |||||||||||||| || |||||| | ||||| |
Sbjct 131 TTCTCCATTACGGTTGCTCAGACCAAGTTCAATTACTTGAAG-CCTTCAAAAGACTT-AG 188
Query 334 CTGATTTTCAGTTTGTCACCATTCCAGAAAGCTTACCAGAGTCTGATTTTG-AGGATCTC 392
||||||||||||| ||||||| ||||| |||||||||| || || | || |||||||
Sbjct 189 CTGATTTTCAGTTCATCACCATCCCAGAGAGCTTACCAGCCTCGGA-TCTGAAGGATCTA 247
Query 393 GGGCCA-ATAGAGTTTCTGCA-TAAGCTCAACAAAGAGTGTCAGGTGAGCTTCAAAG-AC 449
|||||| | | |||||| | ||| |||||||||||||| |||| |||||| ||| |
Sbjct 248 GGGCCAGTTTG-GTTTCT-TATTAAAATCAACAAAGAGTGTGAGGTTAGCTTC-AAGAAG 304
Query 450 TGTTTGGGTCAGTTGTT-GCTGCAAC-A-AGGTAATGAGATAGCCTGTGTTGTCTACGAC 506
||||||||||| || || || ||||| | | | || ||||| || ||||| ||||||||
Sbjct 305 TGTTTGGGTCAATTTTTGGC-GCAACAACAAG-AA-GAGATCGCATGTGTCATCTACGAC 361
Query 507 GAGTTCATGTACTTTGCTGAAGCTGCAGCCAAAGAGTTTAAGCTTCC-AAACGTCATTTT 565
|||||||||||||||||||||||| |||||||||||| ||| ||||| ||| | |||||
Sbjct 362 GAGTTCATGTACTTTGCTGAAGCTACAGCCAAAGAGTATAACCTTCCCAAAATT-ATTTT 420
Query 566 CAGCACC-ACAAGTGCCACGGCTTTTGTTTGCCGCTCTGC-AT-TCGACAAACTTTATGC 622
||| ||| | || ||| |||||||||| ||| |||| ||| || | | |||||| |||||
Sbjct 421 CAGTACCGAAAA-TGCAACGGCTTTTGCTTGTCGCTATGCCATGT-G-CAAACTCTATGC 477
Query 623 AAACAGTATC-CT-GACTCCCTTGAAAGAACCCAAA-GGACAACAAAACGAGCTAGTGCC 679
||| || || || | ||||| | |||||| | || | | || | |||||||||||
Sbjct 478 AAA-AG-ATGGCTTGGCTCCCCTCAAAGAAGG-ATGTGGGCGAGAAGAGGAGCTAGTGCC 534
Query 680 AGAGTTTCATCCCCTGAGATGCAAAGACTTTCCGGTTTCA-CATTGGGCATCATTAGAAA 738
|||||| |||||||| |||| ||||||| | || |||| |||| | || || |||||
Sbjct 535 AGAGTTGCATCCCCTTAGATACAAAGACCTACCAACTTCAGCATTTG-CACCAGTAGAA- 592
Query 739 GCATGA-TGGA-GCTGTATAGGAA-TACA-GTTGACAAACGG-ACAGCTTCCTCGGTGAT 793
|| | | |||| | ||| || || | || || || | | || ||||||||||| ||||
Sbjct 593 GCCTCAGTGGAAG-TGTTTAA-AAGTTCATGT-GATATA-GGCACAGCTTCCTCTATGAT 648
Query 794 AATCAACACAGCGAGCTGTCTAGAGAGCTCATCTCT-GT-CTCGTCTGCAGCAACAGCT- 850
||||||||||| ||| |||||||||| ||||| || | || | || || ||| | ||
Sbjct 649 AATCAACACAGTGAGTTGTCTAGAGATTTCATC-CTTGGACTGG-CTTCAACAAGAACTT 706
Query 851 ACAAATTCCAGTTTATCCTATAGGCCCTCTTCACCTGGTGGCATCAGCT--TC-TACGAG 907
| |||||||| | ||||||||||||||||||||| || |||| |||||| || ||| ||
Sbjct 707 A-AAATTCCAATATATCCTATAGGCCCTCTTCACATGATGGCTTCAGCTCCTCCTACAAG 765
Query 908 TCTTCTTGAAGAGAACAAGAGCTGTATTGAATGGTTGAACAAACAAAAGAAAAACTCTGT 967
||| | |||||| | ||||||| || || ||| |||||||||||||| | ||| ||
Sbjct 766 TCTAATAGAAGAGGATGAGAGCTGCATAGATTGGCTGAACAAACAAAAGCCGAGCTCGGT 825
Query 968 GATATT-CGTAAGCTTGGGAAGCTT-AGCTTTGATGGAAA-TCAATGAGGTGATAGAAAC 1024
||| || | |||| ||||||||||| | |||||||||||| | || || ||| | ||||
Sbjct 826 GAT-TTACATAAGTTTGGGAAGCTTTA-CTTTGATGGAAACTAAA-GAAGTGTTGGAAA- 881
Query 1025 TG-CTTTGGGATTGGATAGTAGCAAGCAACAGTTCTTGTGGGTCATTCGGCCAGGGTC-A 1082
|| ||| ||| |||| |||||| || ||||| ||||||||||| ||| | || ||||| |
Sbjct 882 TGGCTTCGGGGTTGGTTAGTAGTAACCAACACTTCTTGTGGGTGATTAGACCCGGGTCCA 941
Query 1083 GTACGTGGTTCGGAATGGATAGAGAACTTGCCTAAGGAGTT-T--AGTAAGAT--AATT- 1136
| | |||||| |||| | | | | | | | |||||| | |||||||| || |
Sbjct 942 -TCCTTGGTTCTGAATTG-TCTA-A--T-G---A-GGAGTTATTTAGTAAGATGGAAATA 991
Query 1137 TCGGGTCGAGGTTACATTGTGAAATGGGCTCCACAGAAGGAAGTACTTTCTCATCCTGCA 1196
|| | |||||| ||||||||||||||||||||||| ||| |||| ||| | ||| ||||
Sbjct 992 TCTGATCGAGGCTACATTGTGAAATGGGCTCCACAAAAGCAAGTTCTTGCACATTCTGCG 1051
Query 1197 GTAGGAGGATTTTGGAGCCATTGCGGATGGAACTCGACACTAGAGAGCATCGGG-GAAGG 1255
|| |||| ||||||||| ||||| |||||||||||||| ||||||||||| ||| |||||
Sbjct 1052 GTTGGAGCATTTTGGAGTCATTGTGGATGGAACTCGACTCTAGAGAGCAT-GGGTGAAGG 1110
Query 1256 AGTTCCAATGATTTGCAAGCCGTTTTCC-AGTGATCAAATGGTGAATGCGAGATACTTGG 1314
|||||| |||||||| | ||| |||| | | |||||||| ||| |||||| | ||| |||
Sbjct 1111 AGTTCCGATGATTTGTAGGCC-TTTTACTACTGATCAAAAGGTAAATGCGCGGTACGTGG 1169
Query 1315 AGTGTGTATGGAAAATTGGGATTCAAGTTGAGGGTGATCTAGACAGAGGAGCGGTCGAGA 1374
||||||| |||| | ||||| |||| || |||||||| ||||| | ||||| |||||||
Sbjct 1170 AGTGTGTCTGGAGAGTTGGGGTTCACGTGGAGGGTGAGCTAGAGAAAGGAGTAGTCGAGA 1229
Query 1375 GAGCTGTGAGGAGGTTAATGGTGGAGGAAGAAGGGGAGGGGATGAGGAAGAGAGCTATCA 1434
||||||||| |||||||||||||| |||||||| |||| ||||| || ||||||| |||
Sbjct 1230 GAGCTGTGAAAAGGTTAATGGTGGATGAAGAAGGAGAGGAGATGAAGATGAGAGCTCTCA 1289
Query 1435 GTTTGAAAGAGCAACTTAGA-GCCTCTGTTA-TAAGTGGAGGTTCTTCACAC 1484
||||||||||| |||| | | || ||||| | || || |||||||||||||
Sbjct 1290 GTTTGAAAGAGAAACTCAAATGC-TCTGT-ACTACCTGAAGGTTCTTCACAC 1339
> Ahg494179 jgi|Araly1|494179|fgenesh2_kg.7__3612__AT5G37950.2
Length=1053
Score = 582 bits (315), Expect = 2e-165
Identities = 847/1092 (78%), Gaps = 84/1092 (8%)
Strand=Plus/Plus
Query 244 TGCAACTTGCAAAAACACT-TCACTTGAAGGGTTTCTCAATCACAATCGCTCAGACAAAG 302
|||||||||| | | | || | | || ||||||||||| || ||| | ||||||||||||
Sbjct 2 TGCAACTTGCGAGAGCCCTAT-ATTTAAAGGGTTTCTCCATTACAGTTGCTCAGACAAAG 60
Query 303 TTCAATTACTTTAGCCCTTCAGATGACTTCACTGATTTTCAGTTTGTCACCATTCCAGAA 362
||||||||||| | ||||||| | ||||| |||||||||||||| ||||||| |||||
Sbjct 61 TTCAATTACTTAAACCCTTCAAAAGACTTGGCTGATTTTCAGTTTATCACCATCCCAGAG 120
Query 363 AGCTTACCAGAGTCTGATTTTG-AGGATCTCGGGCCA-ATAGAGTTTCTGCA-TAAGCTC 419
|||||||||| || || |||| || |||| |||||| | | |||||| | ||| ||
Sbjct 121 AGCTTACCAGCCTCGGA-TTTGAAGAATCTAGGGCCAGTTTG-GTTTCT-TATTAAAATC 177
Query 420 AACAAAGAGTGTCAGGTGAGCTTCAAAG-ACTGTTTGGGTCAGTTGTTGCTGCAAC-A-A 476
|||||||||||| || | |||||| ||| | |||||||||||||||||| |||||| | |
Sbjct 178 AACAAAGAGTGTGAGATTAGCTTC-AAGAAGTGTTTGGGTCAGTTGTTGTTGCAACAACA 236
Query 477 GGTAATGAGATAGCCTGTGTTGTCTACGACGAGTTCATGTACTTTGCTGAAGCTGCAGCC 536
| || ||||| || ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 237 AG-AA-GAGATCGCATGTGTCATCTACGACGAGTTCATGTACTTTGCTGAAGCTGCAGCC 294
Query 537 AAAGAGTTTAAGCTTCC-AAACGTCATTTTCAGCACC-ACAAGTGCCACGGCTTTTGTTT 594
||||||||| | ||||| ||| || |||||||| ||| | || ||| |||||||||| ||
Sbjct 295 AAAGAGTTTGACCTTCCCAAA-GTTATTTTCAGTACCGAAAA-TGCAACGGCTTTTGCTT 352
Query 595 GC-CGCTCTGC-AT-TCGACAAACTTTATGCAAACAGTATC-CT-GACTCC-CTTGAAAG 648
| |||||||| || | | |||||| |||||||| || || || | |||| || ||||
Sbjct 353 -CTCGCTCTGCCATGT-G-CAAACTCTATGCAAA-AG-ATGGCTTGGCTCCTCTC-AAAG 406
Query 649 AACCCAAA-GGACAACAAA-ACGAGCTAGTGCCAGAGTTTCATCCCCTGAGATGCAAAGA 706
|| | ||| | | | ||||||||||||||||| |||||| | || | ||||||
Sbjct 407 AAGG-ATGTGGA-AGTGAGGAGGAGCTAGTGCCAGAGTTGCATCCCTTAAGGTACAAAGA 464
Query 707 CTTTCCGGTTTCA-CATTGGGCATCATTAGAAAGCATGA-TGGA-GCTGTATAGGAATAC 763
| | || |||| |||| | || || ||||| || | | |||| | ||| || ||| |
Sbjct 465 CCTACCAACTTCAGCATTTG-CACCAGTAGAA-GCCTCAGTGGAAG-TGTTTAAAAATTC 521
Query 764 A-GTTGACAAACGGACAGCTTCCTCGGTGATAATCAACACAG--CGAGCTGTCTAGAGAG 820
| || || ||| ||||||||||||| ||||||||||||||| || | ||||||||||
Sbjct 522 ATGT-GAGAAAGGGACAGCTTCCTCTATGATAATCAACACAGTTCG-G-TGTCTAGAGAT 578
Query 821 CTCATCTCTGTC-TCGTCTGCAGCAACAGCTACAAA-TTCCAGTTTATCCTATAGGCCCT 878
|||||| || | | || || ||| | || |||| ||||| | |||||| |||| |||
Sbjct 579 TTCATCTTTGGAGTGG-CTTCAACAAGAACT-CAAAATTCCAATATATCCTGTAGGACCT 636
Query 879 CTTCACCTGGTGGCATCAGCT--TC-TACGAGTCTTCTTGAAGAGAACAAGAGCTGTATT 935
|||||| |||| | |||||| || ||||||||| || |||||||| |||| || ||
Sbjct 637 CTTCACATGGTTTCTTCAGCTCCTCCTACGAGTCTACTAGAAGAGAATGAGAGTTGCATA 696
Query 936 GAATGGTTGAACAAACAAAAGAAAAACTCTGTGATATTCGTAAGCTTGGGAAGCTT-AGC 994
|| ||| |||||||||||||| || ||| ||||||| | |||||||||||||||| | |
Sbjct 697 GATTGGCTGAACAAACAAAAGCCAAGCTCAGTGATATACATAAGCTTGGGAAGCTTTA-C 755
Query 995 TTTGATGGAAA-TCAATGAGGTGATAGAAACTG-CTTT-GGGATTGGATAGTAGCAAGCA 1051
||||||||||| | || || ||| | |||| || |||| ||| |||| |||||| || ||
Sbjct 756 TTTGATGGAAACTAAA-GAAGTGTTGGAAA-TGGCTTTTGGG-TTGGTTAGTAGTAACCA 812
Query 1052 ACAGTTCTTGTGGGTC-ATTCGGCCAGGGTC-AGTACGT-GGTTCGGAATGGATAGAGAA 1108
| | |||||||||| | || || || || || | || || ||||| |||| || | |
Sbjct 813 ATACTTCTTGTGGG-CGATCCGACCTGGCTCCA-TA-GTTGGTTCTGAATT-ATCTA-A- 866
Query 1109 CTTGCCTAAGGAGTTTAGTAAGAT--AATTTCGGG-TCGAGGTTACATTGTGAAATGGGC 1165
| | || | ||||||| || || | | || |||||| |||||||||||||||||
Sbjct 867 -T-GAGGAATTA-TTTAGTACTATTGAAATACCGGATCGAGGCTACATTGTGAAATGGGC 923
Query 1166 TCCACAGAAGGAAGTACTTTCTCATCCTGC-AGTAGGAG-GATTTTGGAGCCATTGCGGA 1223
||| ||||| |||| ||| | |||||||| | | | || | |||||||| ||||| |||
Sbjct 924 TCCGCAGAAACAAGTGCTTGCACATCCTGCGATTCG-AGCG-TTTTGGAGTCATTGTGGA 981
Query 1224 TGGAACTCGACACTAGAGAGCATCGGGGAAGG-AGTTCCAATGATTTGCAAGCCGTTTTC 1282
||||||||||| |||||||| || |||||||| | |||| |||||||| | ||| ||||
Sbjct 982 TGGAACTCGACCCTAGAGAGTATGGGGGAAGGGA-TTCCGATGATTTGTAGGCC-TTTTA 1039
Query 1283 C-AGTGATCAAA 1293
| | ||||||||
Sbjct 1040 CTACTGATCAAA 1051
> Ahg347751 jgi|Araly1|347751|fgenesh1_pg.C_scaffold_5001143
Length=753
Score = 363 bits (196), Expect = 3e-99
Identities = 265/298 (89%), Gaps = 6/298 (2%)
Strand=Plus/Plus
Query 734 AGAAAGCATGATGGAGCTGTATAGGAATACAGTTGACAAACGGACAGCTTCCTCGGTGAT 793
|||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 435 AGAAAGCACAATGGAGCTGTATAGGAATACAGTTGACAAACGGACAGCTTCATCTGTGAT 494
Query 794 AATCAACACAGCGAGCTGTCTAGAGAGCT-CATCTCTGTC-TCGTCTGCAGCAACAGCTA 851
||||||||| ||||||||||||||||| | |||||||||| | |||||| |||||||||
Sbjct 495 AATCAACACTGCGAGCTGTCTAGAGAG-TGCATCTCTGTCATT-TCTGCAACAACAGCTA 552
Query 852 CAAATTCCAGTTTATCCTATAGGCCCTCTTCACCTGGTGGCATCAGCTTCTACGAGTCTT 911
|||||||||| ||||||||||||||||||||||||||||| || |||||||| |||||
Sbjct 553 AAAATTCCAGTGTATCCTATAGGCCCTCTTCACCTGGTGGCCTCGGCTTCTACAAGTCTG 612
Query 912 CTTGAAGAGAACAAGAGCTGTATTGAATGGTTGAACAAACAAAAGAAAAACTCTGTGATA 971
|||||||||||||| || ||||| ||||||||||||||||||||| |||||| ||||||
Sbjct 613 CTTGAAGAGAACAAAAGTTGTATGGAATGGTTGAACAAACAAAAGGTAAACTCAGTGATA 672
Query 972 TTCGTAAGCTTGGGAAGCT-TAGCTTTGATGGAAATCAATGAGGTGATAGAAACTGCT 1028
| | ||||||||||||||| | ||||| | ||||| ||||||||||| |||| ||||
Sbjct 673 TACATAAGCTTGGGAAGCTAT-GCTTTAACAGAAATTAATGAGGTGATGGAAAGTGCT 729
Score = 351 bits (190), Expect = 7e-96
Identities = 253/284 (89%), Gaps = 2/284 (1%)
Strand=Plus/Plus
Query 345 TTTGTCACCATTCCAGAAAGCTTACCAGAGTCTGATTTTGAGGATCTCGGGCCAATAGAG 404
|||| ||| ||||| ||||||||||| ||||||| |||||||||||||||| || || |
Sbjct 133 TTTGCCACTATTCCGGAAAGCTTACCGGAGTCTGCTTTTGAGGATCTCGGGGCACTAAAA 192
Query 405 TTTCTGCATAAGCTCAACAAAGAGTGTCAGGTGAGCTTCAAAGACTGTTTGGGTCAGTTG 464
||||||| ||||||||||| |||||| |||||||||||||| ||||| ||||||||||||
Sbjct 193 TTTCTGCTTAAGCTCAACATAGAGTGCCAGGTGAGCTTCAAGGACTGCTTGGGTCAGTTG 252
Query 465 TTGCTGCAACAAGGTAATGAGATAGCCTGTGTTGTCTACGACGAGTTCATGTACTTTGCT 524
||||||||||| |||||||||| | ||||| |||||||||||||| |||||||||||
Sbjct 253 CTGCTGCAACAAAGTAATGAGATCTCATGTGTCATCTACGACGAGTTCTTGTACTTTGCT 312
Query 525 GAAGCTGCAGCCAAAGAGTTTAAGCTTCCAAACGTCATTTTCAGCACCACAAGTGCCACG 584
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 313 GAAGCTGCAGCCAAAGAGTTTAAGCTTCCAAACGTTATTTTCAGCACAACAAGTGCCACG 372
Query 585 GCTTTTGTTTGCCGCTCTGCATTCGACAAACTT-TATGCAAACA 627
||||||||||| ||||||| |||| |||| | | |||| |||||
Sbjct 373 GCTTTTGTTTGTCGCTCTGTATTCAACAA-CGTCTATGGAAACA 415
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64981957970
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5