BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G46730.1
Length=2544
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323301 jgi|Araly1|323301|fgenesh1_pm.C_scaffold_5000845 2844 0.0
> Ahg323301 jgi|Araly1|323301|fgenesh1_pm.C_scaffold_5000845
Length=2490
Score = 2844 bits (1540), Expect = 0.0
Identities = 2189/2496 (88%), Gaps = 70/2496 (3%)
Strand=Plus/Plus
Query 1 ATGGTAGATGCTGTCACT-GGTTTCGTTTTGAATAAGATCGGCGGCTATCTCATCAATGA 59
|||||||||||| ||||| ||||| |||||||| |||||||| |||||||| ||||||||
Sbjct 1 ATGGTAGATGCTATCACTGGGTTT-GTTTTGAAAAAGATCGGTGGCTATCTTATCAATGA 59
Query 60 AGTATTGGCGTTGATGGGAGTCAAAGATGATCTAGAGGAGCTGAAGACGGAGTTGACGTG 119
||| | | |||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 60 AGTGTCGATGTTGATTGGAGTCAAAGACGATCTAGAGGAGCTGAAGACGGAGTTGACGTG 119
Query 120 CATCCATGGTTATCTTAAGGATGTTGAAGCTCGAGAAAGAGAAGATGAGGTCTCGAAAGA 179
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 120 CATCCATGGTTATCTTAAGGATGTTGAAGCTCGAGAAAGAGAAGAGGAGGTCTCAAAAGA 179
Query 180 GTGGACAAAACTGGTTTTAGATATCGCCTATGATATCGAGGATGTTTTGGACACCTATTT 239
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 180 GTGGACAAAACTTGTTTTAGATATCGCCTATGACATCGAGGATGTTTTGGACACCTATTT 239
Query 240 CTTGAAACTTGAAGAAAGATCACTA-AGACGAGGCTTGTTGAGATTGACCAACAAAATAG 298
||||||| ||||||||||||||| | ||||||||||||| |||| |||||||||||||||
Sbjct 240 CTTGAAAGTTGAAGAAAGATCAC-AGAGACGAGGCTTGTCGAGAATGACCAACAAAATAG 298
Query 299 GCAAAAAGAGAGATGCTTACAACATAG-TTGAAGATATTAGAACCCTGAAGAGAAGAATC 357
|||| | || |||||| |||| ||||| ||| ||||| |||||||| ||||||||||||
Sbjct 299 GCAAGACGAAAGATGCGTACAGCATAGGTTGT-GATATCAGAACCCTCAAGAGAAGAATC 357
Query 358 TTGGATATAACTCGCAAGCGGGAGACTTTTGGTATAGGAAGCTTCAATGAGCCTCGAGGA 417
|||||| | ||||||||| ||||||||| |||||||||| ||||||| ||||||| ||||
Sbjct 358 TTGGATGTTACTCGCAAGAGGGAGACTTATGGTATAGGAGGCTTCAAAGAGCCTCAAGGA 417
Query 418 G-AG--AATATTACAAATGTT-AGAGTGAGGCAGCTTCGACGTGCTCCACCTGTTGATCA 473
| || |||||| ||| | || ||||| ||||||||| | ||||||| | ||||||||||
Sbjct 418 GGAGGGAATATTTCAAGT-TTGAGAGTTAGGCAGCTTGGGCGTGCTCGATCTGTTGATCA 476
Query 474 AGAAGAGCTAGTGGTTGGTTTGGAAGATGATGTTAAGATTCTTTTGGTAAAGCTTCTTAG 533
|||||| |||| |||||||||||||||||| |||||||||||||||||| |||||| |
Sbjct 477 CGAAGAGTTAGTAATTGGTTTGGAAGATGATGCTAAGATTCTTTTGGTAAAACTTCTTGG 536
Query 534 TGATAATGAGAAAGACAAGAGTTATATTATCTCCATATTCGGTATGGGAGGTCTAGGAAA 593
||||||| || | |||||||| ||||||||||||| ||||||||||||||||| |||||
Sbjct 537 TGATAATAAGGAGGACAAGAGGCATATTATCTCCATCTTCGGTATGGGAGGTCTCGGAAA 596
Query 594 AACTGCACTTGCCAGGAAGCTTTACAACTCGGGGGATGTGAAGAGAAGATTTGATTGCCG 653
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 597 AACTGCACTTGCCAGGAAGCTTTACAACTCAGGGGATGTGAAGAGAAGATTTGATTGCCG 656
Query 654 TGCGTGGACCTATGTTTCTCAAGAGTATAAAACAAGAGATATACTTATCAGAATTATAAG 713
||||||||| ||||||||||||||||||||||| ||||||||||||| ||||| || ||
Sbjct 657 TGCGTGGACTTATGTTTCTCAAGAGTATAAAACTGGAGATATACTTATGAGAATCATTAG 716
Query 714 ATCGCTGGGAAT-AGTTTCTGCAGAAGAAATGGAAAAGATCA-AAATGTTTGAAGAGGAT 771
||| ||||||| | || | | ||||| |||| ||||||| ||| ||||| ||||||
Sbjct 717 ATCTTTGGGAATGACTT-CAGGGGAAGAGTTGGAGAAGATCAGAAA-GTTTGCAGAGGAG 774
Query 772 GAGGAGTTAGAAGTTTACCTTTACGGTCTTCTAGA-GGGAAAAAATTATATGGTGGTAGT 830
|| | | ||||||||||||| ||||||||||||| |||||||| | || ||||||| ||
Sbjct 775 GA--ACT-AGAAGTTTACCTTCACGGTCTTCTAGAAGGGAAAAAGT-ATTTGGTGGTCGT 830
Query 831 AGACGATGTATGGGATCCAGACGCGTGGGAGAGCTTGAAGAGAGCATTACCATGCGATCA 890
|| ||| ||||||| | ||| ||||||||||||||||||||||| ||||| | | ||||
Sbjct 831 GGATGATATATGGGAGCAAGAAGCGTGGGAGAGCTTGAAGAGAGCGTTACCGTACAATCA 890
Query 891 CAGAGGAAGTAAAGTCATCATCACAACGCGTATTAGAGCAATAGCTGAAGGTGTGGAGGG 950
| ||||||||| |||||||||||| |||||||| |||||| |||| ||||| ||||| ||
Sbjct 891 CGGAGGAAGTAGAGTCATCATCACTACGCGTATCAGAGCACTAGCCGAAGGCGTGGATGG 950
Query 951 GACAGTCTACGCTCATAAGTTAAGGTTCTTGACGTTTGAAGAAAGCTGGACGTTGTTTGA 1010
||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 951 GACAGTCTATGCTCATAAGTTAAGGTTCTTGACGTTTGAGGAAAGCTGGACATTGTTTGA 1010
Query 1011 ACGGAAAGCATTCAGCAATATTGAAAAGGTTGATGAGGATCTGCAGAGAACTGGAAAAGA 1070
|| |||||||||||| ||||| |||||| | ||||| ||| ||| || ||| ||||||||
Sbjct 1011 ACAGAAAGCATTCAGGAATATGGAAAAGATCGATGAAGATTTGCTGAAAACCGGAAAAGA 1070
Query 1071 AATGGTTAAAAAATGCGGTGGATTACCGCTTGCTATAGTCGTGCTTTCTGGGCTTTTGTC 1130
||||||| ||||||| ||||| |||||||||||||||||||| ||||| ||| |||||||
Sbjct 1071 AATGGTTCAAAAATGTGGTGGCTTACCGCTTGCTATAGTCGTTCTTTCCGGGATTTTGTC 1130
Query 1131 TAGGAAAAGGACAAACGAGTGGCATGAGGTGTGTGCTAGTTTATGGCGACGCCTAAAGGA 1190
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 1131 TAGGAAAAGGACAAACGAGTGGCATGAGGTGTGTGCTAGTTTATGGAGACGTCTAAAGGA 1190
Query 1191 TAACTCCATTCACATTTCCACTGTGTTTGATCTAAGCTTTAAGGAGATGCGACATGAGTT 1250
| |||||||||| ||||||||||||||||||||||||| ||||| |||| |||||||
Sbjct 1191 TGACTCCATTCATGTTTCCACTGTGTTTGATCTAAGCTTCAAGGATTTGCGGCATGAGTC 1250
Query 1251 GAAACTTTGCTTTCTTTACTTTAGCGTCTTCCCTGAGGACTACGAGATCA-AGGTAGAGA 1309
||||| || ||||| ||| |||| ||||||| |||||||| ||||| | | ||||||
Sbjct 1251 CAAACTCTGTTTTCTGTACCTTAGTATCTTCCCAGAGGACTATGAGAT-AGATATAGAGA 1309
Query 1310 AATTGATACACTTACTTGTAGCAGAAGGGTTTATACAAGAAGATGAAGAGATGAT-GATG 1368
||||||| |||||||||||||||||||||||||||||||| ||||||||||| || ||||
Sbjct 1310 AATTGATCCACTTACTTGTAGCAGAAGGGTTTATACAAGAGGATGAAGAGAT-ATTGATG 1368
Query 1369 GAAGACGTGGCTCGATG-TTATATTGACGAGCTGGTAGATAGAAGTTTAGTGAAAGCTGA 1427
|||||| |||||||| | |||||| ||||||||| |||||||||| |||| ||||||||
Sbjct 1369 GAAGACATGGCTCGA-GATTATATCGACGAGCTGATAGATAGAAGCCTAGTCAAAGCTGA 1427
Query 1428 AAGAATTGAAAGAGG-AAAGGTGATGTCTTGTAGAATCCATGATCTACTGAGAGACTTGG 1486
|||||| ||| |||| |||| | ||||| || | |||||||||||| ||||||||| ||
Sbjct 1428 AAGAATAGAACGAGGCAAAG-TCATGTCCTGCAAAATCCATGATCTTCTGAGAGACGTGA 1486
Query 1487 CTATCAAGAAAGCTAAAGAGCTTAACTTTGTAAATGTTTACAACGAGAAGCAGCATTCTT 1546
|||||||||||| ||||||||||||||||||||| | |||||||||||||| |||||||
Sbjct 1487 TTATCAAGAAAGCCAAAGAGCTTAACTTTGTAAATATATACAACGAGAAGCATCATTCTT 1546
Query 1547 CTGATATTTGCAGAAGAGAAGTGGTTCACCATCTTA-TGAAC-GACTATTACTTGTGTGA 1604
||| |||||||||||| |||||| |||| | | ||| | ||| | || | | || ||
Sbjct 1547 CTGCTATTTGCAGAAGGGAAGTGTTTCATCTTATTAAT-AACAG-CT-TCCC--GTACGA 1601
Query 1605 CAGACGTGTAAACAAACGAATGCGATCCTTCTTATTCATCGGAGAACGGAGGGGTTTTGG 1664
|||| ||||||||||||| ||||||||||||||| ||||||||||| ||||||| | |
Sbjct 1602 CAGAAGTGTAAACAAACGGATGCGATCCTTCTTAATCATCGGAGAA-GGAGGGGGTAT-- 1658
Query 1665 TTATGTCAATACCACAAACTTGAAACTGAAGCTACTTCGAGTGCTAAATAT-GGAAGGGC 1723
| ||||| |||||||||||||||||||||||||||||||||||| |||| |||||| |
Sbjct 1659 T---GTCAAGACCACAAACTTGAAACTGAAGCTACTTCGAGTGCTAGATATTGGAAGG-C 1714
Query 1724 TTT-TGTTTGTTAGTAAAAAT-ATCAGCAATAC---TTTACCAGATGTGATCGGGGAATT 1778
||| | |||| |||| | | || | | |||| |||||||||||| || ||||| ||
Sbjct 1715 TTTCT-TTTGATAGTGAGTTTTAT-ACCCATACGACTTTACCAGATGTAATTGGGGATTT 1772
Query 1779 AATCCATTTGAGGTATCTAGGGATTGCTGATACTTACGTTAGCATTTTACCAGCTTCCAT 1838
|||||| |||||||||||||||| | ||||| ||| || ||||||||||||||||||||
Sbjct 1773 AATCCACCTGAGGTATCTAGGGATCGGTGATATTTATGTCAGCATTTTACCAGCTTCCAT 1832
Query 1839 CTCCAATTTACGGTTTCTACAAACACTAGATGCGTCAGGCAATGATCCCTTCCAGTACAC 1898
|||||||||||||| |||||| |||||| |||| |||||| || | | ||||||||||||
Sbjct 1833 CTCCAATTTACGGTCTCTACAGACACTAAATGCATCAGGCCATAAGCTCTTCCAGTACAC 1892
Query 1899 AACCGATCTTAGTAAGCTCACATCACTAAGGCATGTCATCGGAAAATTTGTGGGAGAATG 1958
|||||||| ||||| | ||| |||||||||||||||| ||||||||||||||||||||
Sbjct 1893 GACCGATCTAAGTAATATTACAACACTAAGGCATGTCATTGGAAAATTTGTGGGAGAATG 1952
Query 1959 TCTAATAGGCGAAGGAGTAAACCTTCAGACCTTGAGGTCTATCTCTTCCTACAGCTGGAG 2018
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1953 TCTAATAGGCGACGGAGTAAACCTTCAGACCTTGAGGTCTATCTCTTCCTACAGCTGGAG 2012
Query 2019 CAAACTGAACCATGAGTTACTCAGAAATCTTCAGGACTTGGAGATCTACGATC-ACTCTA 2077
||| ||||||||||||||||||| |||||||| ||||||||||||||| || | ||||||
Sbjct 2013 CAAGCTGAACCATGAGTTACTCATAAATCTTCGGGACTTGGAGATCTATGA-CGACTCTA 2071
Query 2078 AGTGGGTAGACCAGAGAAGAGTTCCTTTAAACTTTGTTTC-TTTCTCTAAACCGAAAAAT 2136
| |||||||||||||||| |||| | ||| |||| ||||| ||| ||||||| |||||||
Sbjct 2072 ACTGGGTAGACCAGAGAACAGTTTCGTTAGACTTGGTTTCCTTT-TCTAAACTGAAAAAT 2130
Query 2137 CTCCGTGTCCTAAAGCTTGAAATGAGAAACTTCAAGTTATCATCGGAATCAAGGACAACA 2196
||||||||||| ||||| ||||||||||||||||||||||| ||| |||||| || |||
Sbjct 2131 CTCCGTGTCCTCAAGCTCGAAATGAGAAACTTCAAGTTATCGTCGAAATCAAAAACGACA 2190
Query 2197 ATTGGGTTAGTGGATGTGAACTTTCCCAGTCTTGAGTCTCTGACACTTGTCGGAACAACT 2256
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 2191 ATTGGGTTAGTGGATGTGGACTTTCCCAGTCTTGAGTCTCTGACACTTGTCGGAATAACT 2250
Query 2257 CTT-GAGGAAAACTCAATGCCTGCTTTGCAGA-AGTTACCTAGACTGGAAGATCTGGTCT 2314
|| |||||| ||| |||| |||||||||||| | |||||||||||||||||||||||||
Sbjct 2251 -TTCGAGGAAGACTTAATGTCTGCTTTGCAGATA-TTACCTAGACTGGAAGATCTGGTCT 2308
Query 2315 TGAAAGATTGTAATTACTCGGGAGTGAAGATCATGAGCATCAGTGCACAAGGTTTTGGTC 2374
|||||||||||| |||| |||||| ||||||||| |||||||||||||||||||||||||
Sbjct 2309 TGAAAGATTGTAGTTACCCGGGAGCGAAGATCATCAGCATCAGTGCACAAGGTTTTGGTC 2368
Query 2375 GGTTGAAGAATCTTGAAATGTCCATGGAAAGAAGAGGCCATGGATTAGATGAGTTGCGAA 2434
|||||| |||||||||| ||| |||||||| | ||||||||||||||| |
Sbjct 2369 GGTTGAGGAATCTTGAATTGTACATGGAAA----------T--ATTAGATGAGTTGCGGA 2416
Query 2435 TTGAAGAAGAGGCCATGCCTAGTTTAATAAAGCTGA 2470
||||||||||||||||||||||||||||||||||||
Sbjct 2417 TTGAAGAAGAGGCCATGCCTAGTTTAATAAAGCTGA 2452
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95911236910
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5