BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G46740.1
Length=2795
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937391 jgi|Araly1|937391|scaffold_501582.1 4132 0.0
Ahg917668 jgi|Araly1|917668|Al_scaffold_0008_2419 1435 0.0
> Ahg937391 jgi|Araly1|937391|scaffold_501582.1
Length=2495
Score = 4132 bits (2237), Expect = 0.0
Identities = 2410/2494 (97%), Gaps = 9/2494 (0%)
Strand=Plus/Plus
Query 28 AAACCTTATCTTCTCCGCCCATGGCCGCCTTCTCCGTCAACGGGCAGCTTATCCCGACGG 87
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2 AAACCTTATCTTCTCCGCCCATGGCCGCCTTCTCCGTCAACGGGCAGCTTATCCCGACGG 61
Query 88 CAAC-AAGCTCCACTGCTTCCAcctctctctcttcccgtcggaaatttctctctccttcc 146
|||| || |||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 62 CAACTAA-CTCCACCGCTTCCACCTCTCTCTCTTCCCGTCGGAAATTTCTATCTCCTTCC 120
Query 147 tcgtctcgtctccctcgcatctccactcaatctcctcgTGTCCCATCGATAAAATGCAGC 206
|||||||| ||||||||||||||| | | ||||||||| || ||||||||||||||||||
Sbjct 121 TCGTCTCGCCTCCCTCGCATCTCCTCACCATCTCCTCGCGTTCCATCGATAAAATGCAGC 180
Query 207 AAAAGCTTACCTAACCGAGATACAGAGACTTCCTCAAAGGATTCTCTCCTTAAAAACCTA 266
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AGTAGCTTACCTAACCGAGATACAGAGACTTCCTCAAAGGATTCTCTCCTTAAAAACCTA 240
Query 267 GCTAAACCTCTAGCCGTAGCCTCAGTCTCCTCCGCTGCTTCATTCTTTCTGTTCCGAATC 326
||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||
Sbjct 241 GCTAAACCTCTAGCCGTAGCCTCAGTCTCGTCCGCTGCGTCATTCTTTCTATTCCGAATC 300
Query 327 TCGAATCTTCCGTCGGTTCTGACCggtggtggaggaggagga-gatgg-gaatttcggtg 384
|||||||||||||||||||| |||||||||||||| |||||| || || | | | || |
Sbjct 301 TCGAATCTTCCGTCGGTTCTAACCGGTGGTGGAGGTGGAGGAGGA-GGAGGAGAT-GG-G 357
Query 385 gatttggtggtggaggtggtggtggagatggaaatgatggtggattttggGGGAAATTGT 444
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 AATTT--CGGTGGATTTGGTGGTGGAGATGGAAATGATGGTGGATTTTGGGGGAAATTGT 415
Query 445 TTTCTCCTTCACCAGCGGTTGCTGATGAAGAACAATCACCGGATTGGGATTCTCATGGTT 504
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 TTTCTCCTTCGCCGGCGGTTGCTGATGAAGAACAATCACCGGATTGGGATTCTCATGGTT 475
Query 505 TACCGGCGAATATCGTTGTGCAATTGAACAAGCTTAGTGGTTTCAAGAAGTATAAGGTAT 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 TACCGGCGAATATCGTTGTGCAATTGAACAAGCTTAGTGGTTTCAAGAAGTATAAGGTAT 535
Query 565 CTGATATTATGTTCTTTGATCGACGGAGACAAACCACTATTGGTACTGAAGATTCCTTCT 624
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 536 CTGACATTATGTTCTTTGATCGACGGAGACAAACCACAATTGGTACTGAAGATTCCTTCT 595
Query 625 TCGAGATGGTCTCGATTCGTCCTGGTGGAGTTTACACTAAAGCTCAATTGCAGAAGGAGC 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 TCGAGATGGTCTCGATTCGTCCTGGTGGAGTTTACACTAAAGCTCAATTGCAGAAGGAGC 655
Query 685 TTGAAACCCTAGCTACTTGTGGAATGTTTGAGAAAGTTGATTTGGAAGGGAAAACGAAAC 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 TTGAAACCCTAGCTACTTGTGGAATGTTTGAGAAAGTTGATTTGGAAGGGAAAACGAAAC 715
Query 745 CTGATGGAACCCTAGGTGTTACAATCTCGTTTGCTGAGAGTACATGGCAATCTGCTGATA 804
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 716 CTGATGGAACCCTAGGTGTTACAATCTCCTTTGCTGAGAGTACATGGCAATCTGCTGATA 775
Query 805 GGTTTAGATGTATTAACGTTGGGTTAATGGTACAGTCGAAACCTATTGAGATGGATTCAG 864
||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 776 GGTTTAGATGTATCAACGTTGGGTTAATGGTGCAGTCGAAACCCATTGAGATGGATTCAG 835
Query 865 ATATGACTGATAAAGAGAAGCTTGAGTATTACAGGAGTTTGGAGAAGGATTACAAGAGGA 924
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 836 ATATGACTGATAAAGAGAAGCTTGAGTATTACAGGAGCTTGGAGAAGGATTACAAGAGGA 895
Query 925 GAATTGATAGGGCACGGCCTTGTTTGTTGCCTGCACCTGTGTATGGTGAGGTTATGCAGA 984
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 896 GAATTGATAGGGCACGGCCTTGTTTGTTGCCTGCTCCTGTATATGGTGAGGTTATGCAGA 955
Query 985 TGTTGAGGGATCAAGGGAAAGTGAGTGCTAGGCTGTTGCAGAGGATTAGGGACCGTGTTC 1044
|||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 956 TGTTGAGGGACCAAGGGAAAGTGAGTGCAAGGCTTTTGCAGAGGATTAGGGACCGTGTTC 1015
Query 1045 AGAAATGGTATCATGATGAAGGGTATGCTTGTGCTCAAGTTGTGAATTTTGGGAATTTGA 1104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 AGAAATGGTATCATGATGAAGGGTATGCTTGTGCTCAAGTTGTGAATTTTGGGAATTTGA 1075
Query 1105 ATACTAAGGAGGTTGTTTGTGAAGTTGTGGAAGGTGATATAACTCAGCTAGTTATTCAGT 1164
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1076 ATACTAAGGAGGTTGTTTGTGAAGTTGTGGAAGGTGATATAACTCAGCTGGTTATTCAGT 1135
Query 1165 TTCAAGATAAGCTTGGTAATGTGGTTGAAGGAAATACTCAAGTTCCTGTGGTGCGCAGGG 1224
|||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||
Sbjct 1136 TTCAAGATAAGCTTGGTAATGTAGTTGAAGGTAACACTCAAGTTCCTGTGGTGCGCAGGG 1195
Query 1225 AATTGCCTAAGCAGCTTCGCCAAGGCTATGTTTTCAACATTGAAGCTGGGAAAAAAGCTC 1284
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1196 AATTGCCTAAACAGCTTCGCCAAGGCTATGTTTTCAACATTGAAGCTGGGAAACAAGCTC 1255
Query 1285 TCAGTAACATCAATTCATTGGGGCTGTTCTCTAACATTGAAGTCAATCCACGCCCAGATG 1344
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 TCAGGAACATCAATTCATTGGGGCTGTTCTCTAACATTGAAGTCAATCCACGCCCAGATG 1315
Query 1345 AGAAAAATGAAGGGGGCATTATTGTTGAGATCAAGCTTAAGGAGCTAGAACAGAAGTCAG 1404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 AGAAAAATGAAGGGGGCATTATTGTTGAGATCAAGCTTAAGGAGCTAGAACAGAAGTCAG 1375
Query 1405 CTGAAGTCAGTACAGAATGGAGTATTGTTCCTGGGCGTGGAGGAGCTCCCACATTGGCTT 1464
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1376 CTGAAGTCAGTACAGAATGGAGTATTGTTCCTGGGCGTGGAGGAGCTCCCACACTGGCTT 1435
Query 1465 CATTCCAGCCAGGTGGTTCTGTTACTTTCGAGCATCGAAACCTCCAGGGTCTTAATAGGT 1524
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1436 CATTCCAGCCAGGTGGGTCTGTTACTTTCGAGCATCGAAACCTCCAGGGTCTTAATAGGT 1495
Query 1525 CTCTCATGGGTTCAGTGACCACTAGCAACTTCTTGAATCCTCAGGATGATCTTTCGTTTA 1584
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1496 CTCTCATGGGTTCAGTGACCACCAGCAACTTCTTGAATCCTCAGGATGATCTTTCATTTA 1555
Query 1585 AGCTTGAGTATGTGCACCCGTATCTGGATGGTGTTTACAATCCTCGGAACCGAACATTCA 1644
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1556 AGCTTGAGTATGTGCACCCGTATCTGGATGGTGTTTACAATCCTCGGAATCGCACATTCA 1615
Query 1645 AAACAAGCTGCTTCAACAGCCGCAAACTTAGCCCAGTATTCACTGGAGGACCTGGTGTTG 1704
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1616 AAACAAGCTGCTTCAACAGCCGCAAACTTAGCCCAGTATTCACTGGAGGACCCGGTGTTG 1675
Query 1705 AGGAAGTGCCACCAATTTGGGTTGACCGAGCTGGTGTGAAAGCTAATATAACTGAGAACT 1764
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1676 AGGAAGTGCCACCAATTTGGGTTGATCGAGCTGGTGTGAAAGCTAACATAACTGAGAACT 1735
Query 1765 TCACCCGTCAGAGTAAGTTTACATATGGACTTGTGATGGAGGAGATAACAACCCGAGATG 1824
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1736 TCACCCGTCAGAGTAAGTTTACTTATGGACTTGTGATGGAGGAGATAACAACCCGTGATG 1795
Query 1825 AAAGCAGTCACATTGCTGCAAATGGTCAGAGACTACTACCTAGCGGTGGAATCAGTGCTG 1884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1796 AAAGCAGTCACATTGCTGCAAATGGTCAGAGACTACTACCTAGCGGTGGAATCAGTGCTG 1855
Query 1885 ATGGACCTCCAACAACTCTCAGTGGTACCGGTGTCGATCGAATGGCTTTTCTACAAGCCA 1944
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 1856 ATGGACCTCCAACAACTCTCAGTGGTACCGGTATTGATCGAATGGCTTTTCTACAAGCCA 1915
Query 1945 ACATCACCCGTGACAATACCAAATTTGTTAATGGGGCAGTTGTTGGACAGAGGACTGTCT 2004
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1916 ACATCACCCGTGACACTACCAAATTTGTTAATGGGGCAGTTGTTGGACAGAGGACTGTCT 1975
Query 2005 TTCAGGTTGATCAGGGATTGGGTATTGGGAGCAAATTCCCGTTCTTCAACCGCCACCAGT 2064
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1976 TTCAGGTGGATCAGGGACTGGGTATTGGGAGCAAATTCCCGTTCTTCAACCGCCACCAGT 2035
Query 2065 TAACCATGACAAAATTCATTCAGTTGCGGGAAGTAGAACAAGGGGCTGGTAAGTCACCAC 2124
|||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 2036 TAACCATGACAAGATTCATTCAGCTGCGGGAAGTAGAAGAAGGGGCTGGTAAGTCACCAC 2095
Query 2125 CACCAGTTCTAGTCCTCCATGGGCATTACGGAGGCTGCGTTGGCGACCTTCCAAGCTACG 2184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2096 CACCAGTTCTAGTCCTCCATGGGCATTACGGAGGCTGCGTTGGCGACCTTCCAAGCTACG 2155
Query 2185 ATGCTTTTGTCCTCGGTGGTCCGTACTCTGTCCGTGGCTACAACATGGGAGAGCTCGGTG 2244
||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 2156 ATGCTTTTGTCCTTGGTGGTCCGTACTCTGTCCGTGGCTACAATATGGGTGAGCTCGGTG 2215
Query 2245 CTGCTAGAAACATTGCCGAGGTCGGTGCTGAGATCAGAATACCCGTGAAGAACACACATG 2304
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||
Sbjct 2216 CTGCTAGAAACATTGCCGAGGTGGGTGCTGAGATCAGAATACCTGTGAAGAACACGCATG 2275
Query 2305 TCTACGCTTTTGTTGAGCATGGAAATGATTTAGGAAGCTCAAAGGATGTGAAGGGAAACC 2364
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2276 TCTACGCCTTTGTTGAGCATGGAAATGATTTAGGAAGCTCAAAGGACGTGAAGGGAAACC 2335
Query 2365 CTACAGCAGTGTACAGGAGAACGGGTCAGGGTTCATCCTATGGTGCAGGTGTGAAACTCG 2424
|||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 2336 CTACAGCAGTCTACAGGAGAACGGGGCAGGGTTCATCCTACGGTGCAGGTGTGAAACTCG 2395
Query 2425 GTTTGGTCCGAGCTGAGTATGCTGTAGATCACAACAATGGAACCGGTGCTCTGTTCTTCC 2484
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2396 GTTTGGTCCGAGCTGAGTATGCTATAGATCACAACAATGGAACCGGTGCTCTGTTCTTCC 2455
Query 2485 GATTTGGAGAGAGGTATTAAGGTAATGTGAGAAG 2518
| ||||||||||||||||||||||||||||||||
Sbjct 2456 GGTTTGGAGAGAGGTATTAAGGTAATGTGAGAAG 2489
> Ahg917668 jgi|Araly1|917668|Al_scaffold_0008_2419
Length=2538
Score = 1435 bits (777), Expect = 0.0
Identities = 1701/2139 (80%), Gaps = 96/2139 (4%)
Strand=Plus/Plus
Query 420 gatggtggattttggGGGAAATTGTTTTCTCCT-TC---ACCAGCGG-T-T-GCTGATGA 472
||||| ||||||||| |||||||||||||| || | ||||| || | | || || ||
Sbjct 442 GATGGCGGATTTTGGAGGAAATTGTTTTCT-CTGGCAGTACCAGTGGCTGTCGCCGACGA 500
Query 473 AGAACAATCACCGGATTGGGATTCTCATGGTTTACCGGCGAATATCGTTGTGCAATTGAA 532
|||||| |||||||||||||||||||| |||||||||||||| || ||||| || |||||
Sbjct 501 AGAACAGTCACCGGATTGGGATTCTCACGGTTTACCGGCGAACATTGTTGTACAGTTGAA 560
Query 533 CAAGCTTAGTGGTTTCAAGAAGTATAAGGTATCTGATATTATGTTCTTTGATCGACGGAG 592
|||||| |||||||| || |||||||| | || ||||||||||||||||||||||| ||
Sbjct 561 CAAGCTAAGTGGTTTGAAAAAGTATAAAATCTCAGATATTATGTTCTTTGATCGACGAAG 620
Query 593 ACAAA-CCACTATTGGTACTGAAGATTCCTTCTTCGAGATGGTCTCGATTCGTCCTGGTG 651
| ||| |||| ||| || || ||||| |||||||||||||| ||||||| || |
Sbjct 621 A-AAAGCCACCGTTGAAACAGATGATTCTTTCTTCGAGATGGTGTCGATTCAAGAAGGAG 679
Query 652 GAGTTTACACTAAAGCTCAATTGCAGAAGGAGCTT-GAAACCCTAGCTACTTGTGGAAT- 709
|||||||||| |||||||| || ||||||||| || ||||||||| ||||||| || ||
Sbjct 680 GAGTTTACACAAAAGCTCAGTTACAGAAGGAG-TTAGAAACCCTAACTACTTGCGG-ATG 737
Query 710 GTTTGAGAAAGTTGATTTGGAAGGGAAAACGAAACCTGATGGAACCCTAGGTGTTACAAT 769
|||||||||||| ||||| |||||||| ||||| ||||| ||||||||||||||||||||
Sbjct 738 GTTTGAGAAAGTCGATTTCGAAGGGAAGACGAAGCCTGACGGAACCCTAGGTGTTACAAT 797
Query 770 CTCGTTT-GCTGAGAGTACATGGCAA-TCTGCTGATAGGTTTAGATGTATTAACGTTGGG 827
||| ||| || ||||| | |||||| | || || || ||| |||| || ||||| |||
Sbjct 798 CTC-TTTCGCAGAGAGCATGTGGCAAGGC-GCGGAGAGATTTCGATGCATCAACGTAGGG 855
Query 828 TTAATGGTACAGTCGAAACCTATTGAGATGGATTCAGATATGACTGATAAAGAGAAGCTT 887
|||||| ||| | |||||| | |||| |||||||| ||||| || ||||||| | ||
Sbjct 856 TTAATGACACAACCAAAACCTGTAAAGATTGATTCAGACATGACAGAAAAAGAGATGATT 915
Query 888 GAGTA-TTACAGGAGTTTGGAGAAGGATTACAAG-AGGAGAATTGATAGGGC-ACGGCCT 944
||||| || || ||| |||||||| || ||| | ||| ||| | | ||| | ||||
Sbjct 916 GAGTACTT-GAGAAGTCAAGAGAAGGAATATAAGCA-GAGGATTAAGAAGGCGA-GGCCG 972
Query 945 TGTTTG-TTGCCTGCACCTG-TGT-ATGGTGAGGTTATGCAGATGTTGAGGGATCAAGGG 1001
|||||| || || | | | | | | | | |||| |||| ||| | ||||||||| ||
Sbjct 973 TGTTTGCTT-CCGGGATC-GAT-TCAACGAGAGGCGATGCTTATGCTAAGGGATCAAAGG 1029
Query 1002 AAAGTGAGTGCTAGGCTGTTGCA-GAGGATTAGGGACCGTGTTCAGAAATGGTATCATGA 1060
| | ||||| ||||| ||||| ||| ||| ||| || |||| || ||||| || ||
Sbjct 1030 AGTTTAAGTGCGAGGCTTTTGCATAAGG-TTAAGGAACGAGTTCTTAAGTGGTACCAAGA 1088
Query 1061 TGAAGGGTAT-GCTTGTGCTCAA-GTTGTGAATTTTGGGAATTTGAATACTAAGGAGGTT 1118
|||||||| | || |||| || ||||||||||||||||| ||||| | |||||| ||
Sbjct 1089 CCAAGGGTATAG-TTATGCT-AATGTTGTGAATTTTGGGAACTTGAACAGTAAGGAACTT 1146
Query 1119 GTTTGTGAAGTTGTGGAAGGTGATATAACTCAGCTAGTTATTCAGTTTCAAGATAAGCTT 1178
|||| ||||||| ||||||| || ||||| ||| | ||||||||||||||||||||||||
Sbjct 1147 GTTTTTGAAGTTATGGAAGGAGACATAACACAGTTGGTTATTCAGTTTCAAGATAAGCTT 1206
Query 1179 GGTAATGTGGTTGAAGGAAATACTCAAG-TTCCTGTGGTGCGCAG-GGAATTGCCTAAGC 1236
|||||||| |||||||| || || | || ||||||| |||||||| |||| || || |
Sbjct 1207 GGTAATGTAGTTGAAGGTAACACAC-AGATTCCTGTCGTGCGCAGACAAATT-CCAAAAC 1264
Query 1237 AGCTT-CG-CCAAGGCT-ATGTTTTCAACATTG-AAGCTGGGAAAAAAGCTCTCAGTAAC 1292
|| || || || ||| | |||| |||||| || ||| || ||| ||||| | || |||
Sbjct 1265 AG-TTACGTCC-AGG-TCATGTGCTCAACA-TGAAAGTTGCGAACGAAGCTGTGAGGAAC 1320
Query 1293 A-TCAATTCATTGGGGCTGTTCTCTAACATTGAAG-TCAAT-CCACG-CCCAGATGAGAA 1348
| || |||| || || ||||||||||||| | || | || ||| | |||||||||||
Sbjct 1321 ATTC-ATTCTTTAGGATTGTTCTCTAACATCG-AGAT-TATGCCA-GTACCAGATGAGAA 1376
Query 1349 AAATGAAGGGGGCATTATTGTTGAGATCAAGCTT-AAGGA-GCTAGAACAGAAGTCAGCT 1406
||| ||||| || | ||||||||| |||||||| || || || ||| ||||| || | |
Sbjct 1377 AAAGGAAGGAGGTGTAATTGTTGAGGTCAAGCTTCAA-GAGGC-AGATCAGAAATCTG-T 1433
Query 1407 -GAAGTCAGTACAGAATGGAGTATTGTTCCTGGGCGTGGAGGAGCTCCCACATTGGCTTC 1465
|| |||||| |||| |||||||||||||| || | ||||||| ||| || |||| ||
Sbjct 1434 AGACGTCAGTGCAGATTGGAGTATTGTTCCAGGTCCTGGAGGATATCCTTCACTGGCGTC 1493
Query 1466 ATTCCAGCCAGGTGGTTCTGTTACTTTCGAGCATCGAAACCTCCAGGGTCTTAATAGGTC 1525
||||||||| | || ||||| ||||||| ||||||||| || ||||||||||| | ||
Sbjct 1494 GTTCCAGCCAAGCGGGACTGTTTCTTTCGAACATCGAAACATCAAGGGTCTTAATCGATC 1553
Query 1526 TCTCATGGGTTCAGTGACCACTAGCAACTTCTTGAATCCT---CAGGATGATCTTTCGTT 1582
|||||| |||||||| |||||||| ||||||||||||||| |||||||||||||||||
Sbjct 1554 TCTCATTGGTTCAGTAACCACTAGTAACTTCTTGAATCCTGAGCAGGATGATCTTTCGTT 1613
Query 1583 TAAGCTTGAGTATGTGCACCCGTATCTGGATGGTGTTTACAATCCTCGGAACCGAACATT 1642
||||||||||||||| ||||| ||||| || |||||| |||||||| | ||||| || ||
Sbjct 1614 TAAGCTTGAGTATGTACACCCATATCTAGACGGTGTTAACAATCCTAGAAACCGTACCTT 1673
Query 1643 CAAAACAAGC-TGCTTCAACAGCCGCAAACTTAGCCCAGTATTCACTGGAGGACCTGG-T 1700
|||||| || | ||||||||| | |||||||||||||| ||||||||||| ||||| |
Sbjct 1674 CAAAACGAGTAT-CTTCAACAGTAGTAAACTTAGCCCAGTGTTCACTGGAGGCCCTGGAT 1732
Query 1701 GTTGAGGAAG---TGCCACCAAT-TTGGGTTGACCGAGCTGGTGTGAAAGCTAATATAAC 1756
||||||||| || | ||||| |||| | || ||||||||||||||||||| ||||||
Sbjct 1733 -TTGAGGAAGCAGTGGCTCCAATCTTGG-TGGATCGAGCTGGTGTGAAAGCTACTATAAC 1790
Query 1757 TGAGAACTTCACCCGTCAGAGTAAGTTTACATATGGACTTGTGATGGAGGAGATAACAAC 1816
|||| ||||||| ||||||||||| || ||||||||| ||||| |||| |||||||||||
Sbjct 1791 TGAGGACTTCACACGTCAGAGTAAATTAACATATGGAGTTGTGTTGGAAGAGATAACAAC 1850
Query 1817 CCGAGATGAAAGCAGTCACAT-TGCTGCAAATGGTCAGAGACT-ACTACCTAGCGGTGGA 1874
||||||||| | | | || | || ||||||||||| | | | |||||| || |||
Sbjct 1851 TAGAGATGAAAACGGGAAAATCT-CTTCAAATGGTCAG-GTTTTATTACCTAATGGAGGA 1908
Query 1875 ATCAGTGCTGATGGACCTCCAACAACTCTCAGTGGTACCGGTGTCGATCGAATGGCTTTT 1934
|||| || | |||||||||||||||||||||||||||| ||| | ||||| | || |||
Sbjct 1909 ATCAATGTTAATGGACCTCCAACAACTCTCAGTGGTACTGGTATTGATCGTGTAGCCTTT 1968
Query 1935 CTACAAGCCAACATCACCCGTGACAATACCAAATTTGTTAATGGGGC-AGTTGTTGGACA 1993
||||||| || || |||| ||||| ||||| ||||| |||| || | |||| ||| |
Sbjct 1969 CTACAAGGTAATATAACCCAAGACAACACCAAGTTTGTGAATGTAGCTA-TTGTCGGAGA 2027
Query 1994 GAGGACTG-TCTTTCAGGTTGATCAGGGATTGGGTATTGGGAGCAAATTCCCGT-TCTTC 2051
|||| | |||||||||| ||||| || || ||||| || ||||| ||||| |||||
Sbjct 2028 TAGGAA-GATCTTTCAGGTGGATCAAGGCTTAGGTATAGGAAGCAA-TTCCCCACTCTTC 2085
Query 2052 AACCGCCACCAGTTAACCATGACAAAATTCATTC-AGTTGCGGGAAGTAGAACAAGGGGC 2110
|||||||| || |||| | |||||||| |||| | | | | |||||||| |||| |
Sbjct 2086 AACCGCCATCAACTAACTTTAACAAAATTTATTCCACT-GAGACAAGTAGAAGAAGGTCC 2144
Query 2111 TGGTAAGTCACCACCACCAGTTCTAGTCCTCCATGGGCATTACGGAGGCTGCGTTGGCGA 2170
||||| | | ||||||||||||||| |||||||| ||||||| || || || || ||
Sbjct 2145 CGGTAAACCGCAACCACCAGTTCTAGTTCTCCATGGCCATTACGCTGGATGTGTAGGTGA 2204
Query 2171 CCTTCCAAGCTACGATGCTTTTG-TCCTCGGTGGTCCGTA-CTCTGTCCGTGGCTACAAC 2228
|| || | || |||||||||| || | || ||||| || |||||| || || |||| |
Sbjct 2205 TCTACCTGGATATGATGCTTTTGCTCTT-GGAGGTCC-TAACTCTGTTCGAGGTTACA-C 2261
Query 2229 -ATGGGAGAGCTCGGTGCTGCTAGAAACATTGCCGAGGTCGGTGCTGAGATCAGAATACC 2287
| ||||||||||||||| ||||||||||||| |||||| ||||||||| | ||| ||||
Sbjct 2262 TAAGGGAGAGCTCGGTGCAGCTAGAAACATTGTCGAGGTTGGTGCTGAGGTTAGAGTACC 2321
Query 2288 CGTGAAGAACACACATGTCTACGCTTTTGTTGAGCATGGAAATGATTTAGGAAGCTCAAA 2347
| ||||||||||| || || || |||| |||||||||||| ||||| |||||||||||
Sbjct 2322 TATAAAGAACACACAAGTGTATGCATTTGCTGAGCATGGAAACGATTTGGGAAGCTCAAA 2381
Query 2348 GGATGTGAAGGGAAACCCTACAGCAG-TGTACAGGAGAACGGGTCAGGGTTCATCCTATG 2406
||||||||| ||||| || || || | | | ||| |||| ||| || |||||||| ||||
Sbjct 2382 GGATGTGAAAGGAAATCCGACCGCGGCTTT-CAGAAGAAAGGGACATGGTTCATCTTATG 2440
Query 2407 GTGCAGGTGTGAAACTCGGTTTGGTCCGAGCTGAGTATGCTGTAGATCACAACAATGGAA 2466
||| ||||||||||| ||| | | |||||||| |||||||| |||||||| |||||
Sbjct 2441 GTGTGGGTGTGAAACTTGGTCAGATACGAGCTGAATATGCTGTTGATCACAATTGTGGAA 2500
Query 2467 CCGGTGCTCTGT-TCTTCCGATTTGGAGAGAGGTATTAA 2504
|||||||||||| ||||| | || ||||| || ||||||
Sbjct 2501 CCGGTGCTCTGTCTCTTCAG-TTCGGAGAAAGATATTAA 2538
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105471888405
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5