BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G46750.1 Length=1547 Score E Sequences producing significant alignments: (Bits) Value Ahg485044 jgi|Araly1|485044|fgenesh2_kg.5__1036__AT3G46750.1 2246 0.0 > Ahg485044 jgi|Araly1|485044|fgenesh2_kg.5__1036__AT3G46750.1 Length=1528 Score = 2246 bits (1216), Expect = 0.0 Identities = 1438/1542 (93%), Gaps = 27/1542 (2%) Strand=Plus/Plus Query 11 TTGTCTTCCCTTCATGCTTCTCCAATAAGAGACCATGACTATTTTAAGCAtttttttttC 70 |||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1 TTGTCTTCTCTTTATGCTTCTCCAATAAGTGACCATGACTATTTTAAGCATTTTTTTTTT 60 Query 71 TTATGGTTTGTCCAAGAACCTCGGAGAAACAAGA--C---GACATGCACAGTTTTTCTTG 125 |||||||||||||||||||||||||||||||||| | |||||||| | |||||||| Sbjct 61 TTATGGTTTGTCCAAGAACCTCGGAGAAACAAGATTCGTGGACATGCATACCTTTTCTTG 120 Query 126 TCTTATATCTATCTTATGTTGTTCTCAGAGGATCAGAGTTCCTAAACAGAACATCTACAA 185 | |||||| ||||||||||||||||| ||||| ||||||||| |||| ||| ||| |||| Sbjct 121 TATTATATGTATCTTATGTTGTTCTCTGAGGAACAGAGTTCCCAAACGGAAGATCAACAA 180 Query 186 GAACTTTGTGTTTCTGAAATGTCGCGTCAACTAGACCCCGTCGCTGAGCTCGAAAGCTTA 245 ||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| Sbjct 181 GAATTTTGTGTTTCTCAAATGTCGCGTCAACTTGACCCCGTCGCTGAGCTCGAAAGCTTA 240 Query 246 AAAACACATGTTGATCATTCTGGAAATCCTAGCTTCTCAACACTTAGCCAGCGTCACCAA 305 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 241 AAAACACATGTTGATCATTCTGGAAATCCTTGCTTCTCAACACTTAGCCAGCGTCACCAA 300 Query 306 TCTGGTGAAGCTTCAAAGCGGTCACCTTCTGGTTCACCAAGAAAAGAAAATGATGGAGAA 365 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 301 TCTGGTGAAGCTTCAAAAAGGTCACCTTCTGGTTCACCAAGAAAAGAAAATGATGGAGAA 360 Query 366 CATTCTCACCATAAGAAATCTTTGTTCTCTAAAATGAAGGATAAGGCGAAAAAACTGCAG 425 ||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 361 CATTCGCACCATAAGAAATCTTTGTTTTCCAAAATGAAGGATAAGGCGAAAAAACTGCAG 420 Query 426 CACAGTCTCAGCACCAAGAAGAGACATGATGAAGAAGGTGATGCAACCATGTCACCGTTT 485 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 CACAGTGTCAGCACCAAGAAGAGACATGATGAAGAAGGTGATGCAACCATGTCACCGTTT 480 Query 486 TGCAGATCCGAAGATCATGAAGTTAGAGAAGTTGGTTATGCGTCATTGTCACCACGTGAC 545 ||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||| Sbjct 481 AGCAGATCCGAAGACCATGAAGTTAGAGAAGGTGGTTATGCGTCATTTTCACCACGTGAC 540 Query 546 AAGTCAAAAGACCGTAAAGTCagagaagaaggaggagaagaagaagaagaagaTCCTGAA 605 ||||| |||||||||||| |||||||||||||| | | |||||||||||||||||||||| Sbjct 541 AAGTCGAAAGACCGTAAAATCAGAGAAGAAGGA-G-G-AGAAGAAGAAGAAGATCCTGAA 597 Query 606 TATCTTGGAGCCCCAATGTATGAATCAAAGAAGGCACCTGAAGAGTTAAAGGAGACAGCA 665 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 598 TATCTTGGAGCCCCAATGTATGAATCAAAGAAGGCACCTGAAGAGTTAAAGGAGACCGCG 657 Query 666 AGGCAGCATCCCCGAGAGAATCCTGTGATCACTGAGACAAATGTCTTGTCTGTTCTCCCA 725 |||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||| Sbjct 658 AGGCAGCATCCCCGGGAAAATCCTGTGATCACTGAGACAAATGTCTTGTCTGTACTCCCA 717 Query 726 GCCAAACAGGACGCTGAACAAGAACAAAAAGATTGTAATGGTTCCAAAACAG-A-A-CAT 782 ||||||||||||||||||||||||||||||||||||| ||||||||| |||| | | ||| Sbjct 718 GCCAAACAGGACGCTGAACAAGAACAAAAAGATTGTACTGGTTCCAACACAGAACATCAT 777 Query 783 CCTGTGATCTCTGAGAAGAATGTTTTATCTGATGTCAAGCAAGAGAAGCCTGCTGATTCT 842 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 778 CCTGTAATCTCTGAGAAGAATGTTTTATCTGATGTCAAGCAAGAGAAGCCTGCTGATTCT 837 Query 843 GACACAACAACAATAGTAACAGAATCGTCTGAGAAGACAAGGAAAGAGTGCACGAGCCAG 902 |||||||||||||||||||| | | |||||||||||||||||||||| |||||| Sbjct 838 GACACAACAACAATAGTAAC----T-G----AGAAGACAAGGAAAGAGTGCACAAGCCAG 888 Query 903 CAGGAACCTATTAGTCCAAGCAAGACAGTAACAGAAACTGTGACAGAGAAGCTAGCACCT 962 ||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||| Sbjct 889 CAGGAACCTATTAGTCCAAGCAAAACGGTAACAGAAACTGTAACAGAGAAGCTAGCACCT 948 Query 963 GGTTATGCTAAAGTCTCTGACGCAACTCAAGCTATAACTAAGAAGATTCAAGATATGGCT 1022 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 949 GCTTATGCTAAAGTCTCTGACGCAACTCAAGCTATAACTAAGAAGATTCAAGATATGGCT 1008 Query 1023 TTTCCAGAACCAACAGAGCGAGAAGAAGAGGTAAATGATGTTGCAGAAATCAACACTGCC 1082 || |||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||| Sbjct 1009 TTCCCAGAACCAACAGAGCCAGAAGAAGAAGTAAATGATGTTGCGGAAATCAACACTGCC 1068 Query 1083 GGAACTAACCAGCCCACTGGCTTCAATACCAAGGTATGGGACAAAGGCGTATCAATGAAG 1142 ||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||| Sbjct 1069 GGAACTAACCAGCCCACTGGCTTCAATACTAAGGTGTGGGACAAAGGGGTATCAATGAAG 1128 Query 1143 GAATACATATCGCAGAAGTTTGAGCCTAGCGAAGACGATAGAGAACTTTCTCGAGTGATA 1202 ||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||| Sbjct 1129 GAATACATATCCCAGAAGTTTGAACCTAGCGAAGACGATAGAGAACTATCTCGAGTGATA 1188 Query 1203 TCTAAAGCTATCAGTCCTCGTAAAGGTTCTTCTCAGACTTCTAGTTTTGGTGCAGCCACA 1262 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1189 TCTAAAGCTATCAGTCCTCGTAAAGGTTCTTCTCAGACTTCTAGTTTTGGTGCAGCCACA 1248 Query 1263 AACATGGCACCTGCTTCAAATTCAGCAGACAACAAAGCTCCTCTTGTAGCCAACACAAAT 1322 | ||| | ||||||| ||||||||||||||||||||||||| ||| |||||||||||||| Sbjct 1249 ACCATTGTACCTGCTCCAAATTCAGCAGACAACAAAGCTCCCCTTTTAGCCAACACAAAT 1308 Query 1323 GAAATTGTTGAAGCAGAAAATCATGGAAAGATACTTCAACCAAACTAAAGAACAGAGAGT 1382 ||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 1309 GAAATTGTTGAAGAAGAAAATCATGGCAAGATACTACAACCAAACTAAAGAACAGAGAGT 1368 Query 1383 GTTTTTCATTGTTTACAAA-GCCTCTATGTAAGAAAGAGGCTTTCTATTTCAATCCTCTT 1441 |||| | |||||||| ||| ||||||||||||||||||||||||||||| |||| | ||| Sbjct 1369 GTTTCT-ATTGTTTATAAAAGCCTCTATGTAAGAAAGAGGCTTTCTATTCCAATTCACTT 1427 Query 1442 TTTCCCCCTATTAGTTATGTTATCATACCAAAACCAAGATTCATTTTGTCTGAAGTCTG- 1500 ||| ||||||||||||||||||||||||||||||| |||| |||||| |||||| |||| Sbjct 1428 TTTTCCCCTATTAGTTATGTTATCATACCAAAACCTAGATACATTTTTTCTGAACTCTGA 1487 Query 1501 --T-TGTATACATACATAAGAAATTCTAATACATCTTCTTTT 1539 | ||| | |||||||||| ||||||||||||||| |||| Sbjct 1488 AGTCTGT-TGTATACATAAGAGATTCTAATACATCTTTTTTT 1528 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57935262645 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5