BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G46750.1
Length=1547
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485044 jgi|Araly1|485044|fgenesh2_kg.5__1036__AT3G46750.1 2246 0.0
> Ahg485044 jgi|Araly1|485044|fgenesh2_kg.5__1036__AT3G46750.1
Length=1528
Score = 2246 bits (1216), Expect = 0.0
Identities = 1438/1542 (93%), Gaps = 27/1542 (2%)
Strand=Plus/Plus
Query 11 TTGTCTTCCCTTCATGCTTCTCCAATAAGAGACCATGACTATTTTAAGCAtttttttttC 70
|||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 TTGTCTTCTCTTTATGCTTCTCCAATAAGTGACCATGACTATTTTAAGCATTTTTTTTTT 60
Query 71 TTATGGTTTGTCCAAGAACCTCGGAGAAACAAGA--C---GACATGCACAGTTTTTCTTG 125
|||||||||||||||||||||||||||||||||| | |||||||| | ||||||||
Sbjct 61 TTATGGTTTGTCCAAGAACCTCGGAGAAACAAGATTCGTGGACATGCATACCTTTTCTTG 120
Query 126 TCTTATATCTATCTTATGTTGTTCTCAGAGGATCAGAGTTCCTAAACAGAACATCTACAA 185
| |||||| ||||||||||||||||| ||||| ||||||||| |||| ||| ||| ||||
Sbjct 121 TATTATATGTATCTTATGTTGTTCTCTGAGGAACAGAGTTCCCAAACGGAAGATCAACAA 180
Query 186 GAACTTTGTGTTTCTGAAATGTCGCGTCAACTAGACCCCGTCGCTGAGCTCGAAAGCTTA 245
||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 181 GAATTTTGTGTTTCTCAAATGTCGCGTCAACTTGACCCCGTCGCTGAGCTCGAAAGCTTA 240
Query 246 AAAACACATGTTGATCATTCTGGAAATCCTAGCTTCTCAACACTTAGCCAGCGTCACCAA 305
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 241 AAAACACATGTTGATCATTCTGGAAATCCTTGCTTCTCAACACTTAGCCAGCGTCACCAA 300
Query 306 TCTGGTGAAGCTTCAAAGCGGTCACCTTCTGGTTCACCAAGAAAAGAAAATGATGGAGAA 365
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TCTGGTGAAGCTTCAAAAAGGTCACCTTCTGGTTCACCAAGAAAAGAAAATGATGGAGAA 360
Query 366 CATTCTCACCATAAGAAATCTTTGTTCTCTAAAATGAAGGATAAGGCGAAAAAACTGCAG 425
||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 361 CATTCGCACCATAAGAAATCTTTGTTTTCCAAAATGAAGGATAAGGCGAAAAAACTGCAG 420
Query 426 CACAGTCTCAGCACCAAGAAGAGACATGATGAAGAAGGTGATGCAACCATGTCACCGTTT 485
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CACAGTGTCAGCACCAAGAAGAGACATGATGAAGAAGGTGATGCAACCATGTCACCGTTT 480
Query 486 TGCAGATCCGAAGATCATGAAGTTAGAGAAGTTGGTTATGCGTCATTGTCACCACGTGAC 545
||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 481 AGCAGATCCGAAGACCATGAAGTTAGAGAAGGTGGTTATGCGTCATTTTCACCACGTGAC 540
Query 546 AAGTCAAAAGACCGTAAAGTCagagaagaaggaggagaagaagaagaagaagaTCCTGAA 605
||||| |||||||||||| |||||||||||||| | | ||||||||||||||||||||||
Sbjct 541 AAGTCGAAAGACCGTAAAATCAGAGAAGAAGGA-G-G-AGAAGAAGAAGAAGATCCTGAA 597
Query 606 TATCTTGGAGCCCCAATGTATGAATCAAAGAAGGCACCTGAAGAGTTAAAGGAGACAGCA 665
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 598 TATCTTGGAGCCCCAATGTATGAATCAAAGAAGGCACCTGAAGAGTTAAAGGAGACCGCG 657
Query 666 AGGCAGCATCCCCGAGAGAATCCTGTGATCACTGAGACAAATGTCTTGTCTGTTCTCCCA 725
|||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 658 AGGCAGCATCCCCGGGAAAATCCTGTGATCACTGAGACAAATGTCTTGTCTGTACTCCCA 717
Query 726 GCCAAACAGGACGCTGAACAAGAACAAAAAGATTGTAATGGTTCCAAAACAG-A-A-CAT 782
||||||||||||||||||||||||||||||||||||| ||||||||| |||| | | |||
Sbjct 718 GCCAAACAGGACGCTGAACAAGAACAAAAAGATTGTACTGGTTCCAACACAGAACATCAT 777
Query 783 CCTGTGATCTCTGAGAAGAATGTTTTATCTGATGTCAAGCAAGAGAAGCCTGCTGATTCT 842
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 CCTGTAATCTCTGAGAAGAATGTTTTATCTGATGTCAAGCAAGAGAAGCCTGCTGATTCT 837
Query 843 GACACAACAACAATAGTAACAGAATCGTCTGAGAAGACAAGGAAAGAGTGCACGAGCCAG 902
|||||||||||||||||||| | | |||||||||||||||||||||| ||||||
Sbjct 838 GACACAACAACAATAGTAAC----T-G----AGAAGACAAGGAAAGAGTGCACAAGCCAG 888
Query 903 CAGGAACCTATTAGTCCAAGCAAGACAGTAACAGAAACTGTGACAGAGAAGCTAGCACCT 962
||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||
Sbjct 889 CAGGAACCTATTAGTCCAAGCAAAACGGTAACAGAAACTGTAACAGAGAAGCTAGCACCT 948
Query 963 GGTTATGCTAAAGTCTCTGACGCAACTCAAGCTATAACTAAGAAGATTCAAGATATGGCT 1022
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 949 GCTTATGCTAAAGTCTCTGACGCAACTCAAGCTATAACTAAGAAGATTCAAGATATGGCT 1008
Query 1023 TTTCCAGAACCAACAGAGCGAGAAGAAGAGGTAAATGATGTTGCAGAAATCAACACTGCC 1082
|| |||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||
Sbjct 1009 TTCCCAGAACCAACAGAGCCAGAAGAAGAAGTAAATGATGTTGCGGAAATCAACACTGCC 1068
Query 1083 GGAACTAACCAGCCCACTGGCTTCAATACCAAGGTATGGGACAAAGGCGTATCAATGAAG 1142
||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||
Sbjct 1069 GGAACTAACCAGCCCACTGGCTTCAATACTAAGGTGTGGGACAAAGGGGTATCAATGAAG 1128
Query 1143 GAATACATATCGCAGAAGTTTGAGCCTAGCGAAGACGATAGAGAACTTTCTCGAGTGATA 1202
||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1129 GAATACATATCCCAGAAGTTTGAACCTAGCGAAGACGATAGAGAACTATCTCGAGTGATA 1188
Query 1203 TCTAAAGCTATCAGTCCTCGTAAAGGTTCTTCTCAGACTTCTAGTTTTGGTGCAGCCACA 1262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1189 TCTAAAGCTATCAGTCCTCGTAAAGGTTCTTCTCAGACTTCTAGTTTTGGTGCAGCCACA 1248
Query 1263 AACATGGCACCTGCTTCAAATTCAGCAGACAACAAAGCTCCTCTTGTAGCCAACACAAAT 1322
| ||| | ||||||| ||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 1249 ACCATTGTACCTGCTCCAAATTCAGCAGACAACAAAGCTCCCCTTTTAGCCAACACAAAT 1308
Query 1323 GAAATTGTTGAAGCAGAAAATCATGGAAAGATACTTCAACCAAACTAAAGAACAGAGAGT 1382
||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1309 GAAATTGTTGAAGAAGAAAATCATGGCAAGATACTACAACCAAACTAAAGAACAGAGAGT 1368
Query 1383 GTTTTTCATTGTTTACAAA-GCCTCTATGTAAGAAAGAGGCTTTCTATTTCAATCCTCTT 1441
|||| | |||||||| ||| ||||||||||||||||||||||||||||| |||| | |||
Sbjct 1369 GTTTCT-ATTGTTTATAAAAGCCTCTATGTAAGAAAGAGGCTTTCTATTCCAATTCACTT 1427
Query 1442 TTTCCCCCTATTAGTTATGTTATCATACCAAAACCAAGATTCATTTTGTCTGAAGTCTG- 1500
||| ||||||||||||||||||||||||||||||| |||| |||||| |||||| ||||
Sbjct 1428 TTTTCCCCTATTAGTTATGTTATCATACCAAAACCTAGATACATTTTTTCTGAACTCTGA 1487
Query 1501 --T-TGTATACATACATAAGAAATTCTAATACATCTTCTTTT 1539
| ||| | |||||||||| ||||||||||||||| ||||
Sbjct 1488 AGTCTGT-TGTATACATAAGAGATTCTAATACATCTTTTTTT 1528
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57935262645
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5