BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G46770.1
Length=941
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323305 jgi|Araly1|323305|fgenesh1_pm.C_scaffold_5000849 1127 0.0
> Ahg323305 jgi|Araly1|323305|fgenesh1_pm.C_scaffold_5000849
Length=828
Score = 1127 bits (610), Expect = 0.0
Identities = 737/796 (93%), Gaps = 17/796 (2%)
Strand=Plus/Plus
Query 162 GATACAGTTCTGAAGTTTTTCAGAGTTTACATACCAAATCAAACCGCGGATGACATGAAT 221
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 34 GATACAGTTCAGAAGTTTTTCAGAGTTTACATACCAAATCAAACCGCAGATGACATGAAT 93
Query 222 CTACCTTTGGTTTCAGACAAGATCTCAGGGAAGCCTCTTCCTCGGAAGGTAACTGTTAAA 281
||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 94 CTACCTTTGGTTTTGGACAAGATCTCAGGGAAGCCTCTTCCTCGGAAGGTGACTGTTAAA 153
Query 282 AGTGTGTCCTCGGGGAACATTTGGAGGATGGAAATGAAAGCAAACGGTAACACAGTGTTT 341
|| ||||| || |||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 154 AGCGTGTCTTCCGGGAACATTTGGAGGATGGAAATGAAAGCAAACGGTGACACCGTGTTT 213
Query 342 CTCCGAGACGGGTGGAAGAAAATCGTCAAGGACGAGAATGTGACTGAGCCAATTTTCTTG 401
||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||
Sbjct 214 CTCCGAGACGGGTGGAAGAGAATCGTCAAGGACGAGAATGTGACAGAGACAATTTTCTTG 273
Query 402 GAGTTTGAGTTCGATGGTTATGGTGTGTTCCACTTTTGCGTGTACGAGTATGGTTCAATG 461
||| ||||||||||||||| |||||| ||||||||||| ||||| |||||||||||||||
Sbjct 274 GAGCTTGAGTTCGATGGTTCTGGTGTATTCCACTTTTGTGTGTATGAGTATGGTTCAATG 333
Query 462 TGTAAAAGGATGAGATCTCCAATGGAAAAAGAAGTGATTAAAGT-G---G-AC------A 510
|||||||||||||||||||||||||||||||||||||| ||||| | | || |
Sbjct 334 TGTAAAAGGATGAGATCTCCAATGGAAAAAGAAGTGATAAAAGTGGACAGTACTGAAGAA 393
Query 511 G----TGAAGAAGATGTGCTTGTGG-GGAATGAAGAGAGCACAAAAGGGCTTGAGGAGTC 565
| |||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 394 GAAATTGAAGAAGATGTGCTTGTGGATG-ATGAAGAGAGCACAAAAGGGCTTGAGGAGTC 452
Query 566 GCCAAGAAGAGGTGGTACAAGTAGAAGACGTGCGAAACTGAAGACTAAGAGTCATAAGAT 625
|||||||||||||||||||||||||||||||| ||| |||||||| | ||||||||| |
Sbjct 453 GCCAAGAAGAGGTGGTACAAGTAGAAGACGTGAGAATTTGAAGACTGACAGTCATAAGTT 512
Query 626 TTATGAACATCTAGACAACAAACTAAACCCGTCGTTTCCGGTTGATATGACTCAAAATAG 685
||| |||||||||| |||||||||||| |||||||||||||||||||||||||| | |||
Sbjct 513 TTACGAACATCTAGGCAACAAACTAAATCCGTCGTTTCCGGTTGATATGACTCAGAGTAG 572
Query 686 AACGCGCATACCGTCTTTACTTATAAAGGACTACAACTTGACATTTCCCAACATGGTTAT 745
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 573 AACGCGCATACCGTCTTTACTTATAAAGGACTACAACTTGACATTTCCAAACATGGTTAT 632
Query 746 CATGCGTGACAAGATTGGCATATTGAAGAGAAGAATCGTGATTTGGAAGAACAGATCCGT 805
| |||||||||||||||||||||||||||| ||||||| | |||||||||||| ||||||
Sbjct 633 CGTGCGTGACAAGATTGGCATATTGAAGAGGAGAATCGCGGTTTGGAAGAACAAATCCGT 692
Query 806 GTATCTAAATGGAATCGGTAGTATCATCCGAAGGAATCATGTGAAGCCAGGTAATGAAGT 865
|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 693 GTATCTAAATGGAATCAGTAGTATCATCCGAAGGAATCATGTGAAGCCAGGTGATGAAAT 752
Query 866 GGTATTCGAACTTAAGATGGTCAATGGTTATCACGGTTTGGTTCACGAAATCAAGGTCCA 925
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 753 GGTATTCGAACTAAAGATGGTCAATGGTTATCACGGTTTGGTTCACGAAATCAAGGTCCA 812
Query 926 CATTATCAAGGCCTGA 941
||||||||| ||||||
Sbjct 813 CATTATCAAAGCCTGA 828
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34920591972
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5