BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G46810.1
Length=2388
Score E
Sequences producing significant alignments: (Bits) Value
Ahg897507 jgi|Araly1|897507|Al_scaffold_0005_1473 929 0.0
> Ahg897507 jgi|Araly1|897507|Al_scaffold_0005_1473
Length=1062
Score = 929 bits (503), Expect = 0.0
Identities = 646/712 (91%), Gaps = 21/712 (3%)
Strand=Plus/Plus
Query 92 ATGGAAAAAGTGGTGCTACGGGTTCATGACCATCCTTTGTTACCCTTTGAACGCTTTTAT 151
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 1 ATGGAAAAAGTGGTGCTACGGGTTCATGACCATCCTCTGTTACCCTTTGATCGCTTTTAT 60
Query 152 TTTGGCCGTTGTTCCGGGTGCTCACGTGAAGGCTACTTTTATGGAGGCTACCGTTGCAAT 211
| | ||||||| || ||||| | | |||| |||||||||||||||||||||||||||
Sbjct 61 TACGACCGTTGTGATGGTTGCTCGCTTAAAGGTTACTTTTATGGAGGCTACCGTTGCAAT 120
Query 212 GAGTTGGCGTGTTTTGCGGTGTTCCATAAGGAGTGCGCTGAGTCCAAACCCGAGATCAGC 271
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GAGTTGGCATGTTATGCGGTGTTCCATAAGGAGTGCGCTGAGTCCAAACCCGAGATCAGC 180
Query 272 CACCATGCCCATCCCAAGCATCTGCTTAAGCTTGGC-AATAGACGTCAACGTTGTCATTT 330
||||||||||||||||||||||| |||||||||||| || |||||| |||||||||||
Sbjct 181 CACCATGCCCATCCCAAGCATCTACTTAAGCTTGGCCAA-AGACGTGGTCGTTGTCATTT 239
Query 331 GTGTGAACGGCCGGTGGGAATTGGTTATTTTTGTTCGATATGTGACTTTGGTATGCATTT 390
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 240 GTGTGAACGGCCGGTGGGAGTTGGTTATTTTTGTTCAATATGTGACTTTGGTATGCATTT 299
Query 391 GGTTTGTGCGAAG-TCCCCACCACTCTCACTTCAGCCACAACTCTCTAGTATTGAGAATT 449
||||||||| ||| |||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 300 GGTTTGTGCAAAGATCCC-ACCACTCTCACTTCAGCCACAACTCTCTACTATTGAGAATT 358
Query 450 ACAAGGTGCATGAACATCCTCTTAAACCTTTCAAAACAGCATGGCTTGCAGAAACTGGCA 509
||||||||||||||||||||||| ||||| | |||||||||||||||||||| ||||||
Sbjct 359 ACAAGGTGCATGAACATCCTCTTTCACCTTCCCAAACAGCATGGCTTGCAGAACCTGGCA 418
Query 510 ATTGCAAAGGGTGTAACTACATTATCGGCAATGGAGATAGCGCTCCTTTTTATGAATGTC 569
|||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||
Sbjct 419 ATTGCAAAGGGTGTAACTACATTATCGGCATTGGAGATAAAGCTCCTTATTATGAATGTC 478
Query 570 GTCGGTGTAAACTTTACATTCATGT-GACTTGCCTTGAGCTCTTTTTCACCACAGATGCA 628
||||||||| || ||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 479 ATCGGTGTAATCTCTACATTCAT-TCGACTTGCCTTGAGCTCTTTTTCACCACAGATGCA 537
Query 629 CGCCACAACTCTCATCTCAAACACCCTCTCAAATATCTCAAAAATGGACCCCCGAGCTAC 688
| |||||||||||||||||||||||||||||||||| |||||| ||| |||||||| |||
Sbjct 538 CACCACAACTCTCATCTCAAACACCCTCTCAAATATATCAAAAGTGGGCCCCCGAGTTAC 597
Query 689 GCCGACCATAAATGCCTTCTTTGCGGAAGAGAGTTTGAAGATCAAC---AAG-G---C-- 739
|||||||||| ||||||||||||||||||| ||||| ||||||||| ||| | |
Sbjct 598 GCCGACCATAGATGCCTTCTTTGCGGAAGACAGTTTCAAGATCAACTTGAAGAGTTACAA 657
Query 740 C-A-A--AAA--TATGAGCTTTATCACTGTGATGTTTGTAACTTCAGCATAT 785
| | | ||| |||||||||||||| ||||| |||||||||||||||||||
Sbjct 658 CTACACCAAAAATATGAGCTTTATCATTGTGAAGTTTGTAACTTCAGCATAT 709
Score = 287 bits (155), Expect = 3e-76
Identities = 214/242 (88%), Gaps = 6/242 (2%)
Strand=Plus/Plus
Query 1911 ACTTCTCCTATCATATGCCAGGACCATTATCAACCGTAGTTAGCGAATACAAAATGGTAC 1970
||||||| |||||||||||||||||||| ||| | | ||| | | |||||||||||||
Sbjct 827 ACTTCTCATATCATATGCCAGGACCATTGTCAGCGGAAGTAAACTCATACAAAATGGTA- 885
Query 1971 CGCCCGCGGTAGTAAGCTTATACAAAGTGGTGCCAAACACTTCGATTTGTAGACCACTTT 2030
| |||||||| ||| |||||||||||| || |||||||||| || |||| || |||
Sbjct 886 ----C-CGGTAGTAGGCTCATACAAAGTGGTACCGAACACTTCGACTTATAGATCATTTT 940
Query 2031 GCTCCAGGTGTCACACTAGATGCAAACTCCCTTGCATTCTTGAAACCTCCGAGGATGGTG 2090
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 941 GCTCCAGGTGTCACACTAGATGCAAACTCCCTTGCATTCTTGAAGCCTCCGAGGATGGTG 1000
Query 2091 TTAATGTTTACTTTTGTTCTAATGATTGTCATAAAAATCCTTGGGAGTCGTCGTATTATT 2150
|| |||||||||||||||||||||||||| |||||||||||||||| || ||||||||||
Sbjct 1001 TTGATGTTTACTTTTGTTCTAATGATTGTTATAAAAATCCTTGGGAATCATCGTATTATT 1060
Query 2151 AG 2152
||
Sbjct 1061 AG 1062
Score = 161 bits (87), Expect = 2e-38
Identities = 100/106 (94%), Gaps = 1/106 (1%)
Strand=Plus/Plus
Query 1548 TTATGGATATACGATGTGGTTCGATATTTGAACCATTTGTTCATGAAAGGCATCCACATC 1607
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 710 TTATGGATGTACGATGTGGTTCGATATTTGAACCATTTGTTCATGAAAGTCATCCACATC 769
Query 1608 CTTTATACTACAAGTTCTTCACCTTTTCGGCGGTTGCGAAGTGCGA 1653
|||||||||||||||||| |||||||| ||||| |||||||| |||
Sbjct 770 CTTTATACTACAAGTTCTACACCTTTTTGGCGGATGCGAAGT-CGA 814
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89969158690
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5