BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G46820.1
Length=1583
Score E
Sequences producing significant alignments: (Bits) Value
Ahg897508 jgi|Araly1|897508|Al_scaffold_0005_1474 1546 0.0
Ahg917653 jgi|Araly1|917653|Al_scaffold_0008_2404 1070 0.0
Ahg887874 jgi|Araly1|887874|Al_scaffold_0048_7 702 0.0
> Ahg897508 jgi|Araly1|897508|Al_scaffold_0005_1474
Length=939
Score = 1546 bits (837), Expect = 0.0
Identities = 905/939 (96%), Gaps = 0/939 (0%)
Strand=Plus/Plus
Query 286 ATGGCGCAACAAGGGCAGGGAAGCATGGACCCTGCTGTTCTCGACGACATCATTCGTCGT 345
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGGCGCAACAAGGGCAGGGAAGCATGGACCCTGCTGTTCTCGACGACATCATTCGACGT 60
Query 346 TTACTTGATTACCGAAACCCTAAAGCTGGGACCAAACAAGCTATGCTCAACGATTCTGAG 405
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTACTTGATTACAGAAACCCTAAAGCTGGGACCAAACAAGCTATGCTCAACGATTCTGAG 120
Query 406 ATCCGACAGCTTTGCTTTGTCTCTAGAGAGATATTTCTTCAACAGCCTTGTCTTCTTGAG 465
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 ATCCGACAGCTTTGTTTTGTCTCCAGAGAGATATTTCTTCAACAGCCTTGTCTTCTTGAG 180
Query 466 CTCGCTGCCCCTGTTAAGATCTGCGGTGATATTCATGGTCAATACTCAGATTTATTGAGG 525
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 181 CTCGCTGCCCCTGTTAAGATCTGTGGTGATATTCACGGTCAATACTCAGATTTATTGAGG 240
Query 526 CTTTTCGAGTATGGAGGTTTCCCTCCTGCAGCAAACTACTTATTCTTAGGAGATTACGTT 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTTTTCGAGTATGGAGGTTTCCCTCCTGCAGCAAACTACTTATTCTTAGGAGATTACGTT 300
Query 586 GACCGCGGAAAGCAGAGTTTGGAGACTATTTGTCTTCTGCTTGCTTACAAGATCAAATAC 645
||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GACCGTGGGAAGCAGAGTATGGAGACTATTTGTCTTCTGCTTGCTTACAAGATCAAATAC 360
Query 646 CCTGAAAACTTTTTTCTCTTAAGAGGAAACCATGAGTGTGCATCTATTAACAGAATTTAC 705
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 361 CCCGAAAACTTTTTTCTTTTAAGAGGAAACCATGAGTGTGCATCTATTAACAGAATCTAC 420
Query 706 GGATTCTATGACGAATGTAAACGAAGATTCAACGTGAAGCTCTGGAAAGTGTTTACCGAT 765
|||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| ||
Sbjct 421 GGATTCTATGACGAATGTAAACGAAGGTTCAATGTGAAGCTCTGGAAAGTATTTACAGAC 480
Query 766 ACTTTTAACTGTCTCCCTGTGGCTGCTGTCATAGATGAAAAGATACTTTGTATGCATGGT 825
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||
Sbjct 481 ACTTTTAACTGTCTCCCTGTGGCTGCTGTCATAGACGAAAAGATCCTTTGTATGCACGGT 540
Query 826 GGACTATCTCCTGAGTTGATCAATGTGGAACAAATTAAGAACATAGAGCGTCCAACTGAT 885
||||||||||| || ||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 541 GGACTATCTCCCGATTTGATCAATGTGGAACAGATTAAGAACATAGAGCGTCCAATTGAT 600
Query 886 GTTCCAGACGCTGGTTTGCTCTGTGACCTTCTTTGGTCTGATCCTAGTAAAGATGTCAAA 945
||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 601 GTTCCAGACTCTGGTTTGCTCTGTGACCTTCTTTGGTCTGATCCTAGTAAAGACATCAAA 660
Query 946 GGCTGGGGGATGAATGATCGTGGTGTCTCCTACACTTTTGGTGCTGACAAAGTTGCTGAG 1005
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 661 GGCTGGGGGATGAATGATCGTGGTGTCTCTTACACTTTTGGCGCTGACAAAGTTGCTGAG 720
Query 1006 TTTTTAATAAAGAATGATATGGATTTAGTCTGTCGTGCCCACCAGGTTGTAGAGGATGGG 1065
||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 721 TTTCTAATAAAAAATGATATGGATTTAGTCTGTCGTGCCCACCAGGTTGTGGAGGATGGG 780
Query 1066 TATGAGTTCTTTGCTGATAGACAGCTTGTGACTATGTTTTCTGCTCCAAACTACTGTGGT 1125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TATGAGTTCTTTGCTGATAGACAGCTTGTGACTATGTTTTCTGCTCCAAACTACTGTGGT 840
Query 1126 GAATTTGACAATGCGGGTGCATTGATGAGTGTCGACGAAAGTTTAATGTGCTCTTTCCAA 1185
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 841 GAATTTGACAATGCGGGTGCATTGATGAGTGTGGACGAAAGTTTAATGTGCTCTTTCCAA 900
Query 1186 ATTCTTAAGCCTGTGGATCGGAGGTCGCGGTTCTTTTGA 1224
|||||||||||||||||||| ||||||||||||||||||
Sbjct 901 ATTCTTAAGCCTGTGGATCGCAGGTCGCGGTTCTTTTGA 939
> Ahg917653 jgi|Araly1|917653|Al_scaffold_0008_2404
Length=939
Score = 1070 bits (579), Expect = 0.0
Identities = 832/952 (87%), Gaps = 26/952 (3%)
Strand=Plus/Plus
Query 286 ATGGCGCAACAAGGGCAGGGAAGCATGGACCCTGCTGTTCTCGACGACATCATTCGTCGT 345
||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||
Sbjct 1 ATGGCGCAACAAGGGCAGGGAAGCATGGACCCTGCCGTTCTCGATGATATCATTCGTCGT 60
Query 346 TTACTT-GATTACCGAAACCCTAAAG-CTGGGACCAAACAAGCTATGCTCAACGATTCTG 403
|| || |||||| |||||||| ||| |||| || || || | |||||||| ||| ||||
Sbjct 61 TT-GTTGGATTACAGAAACCCT-AAGCCTGGTACGAAGCAGGTTATGCTCACCGAGTCTG 118
Query 404 AGATCCGACAGCTTTGCTTTGTCTCTAGAGAGATATTT-CTTCAACAGCCTTGTCTTCTT 462
||||||||||||||||| | |||||||||||||| ||| |||||||||||| || |||
Sbjct 119 AGATCCGACAGCTTTGCATCGTCTCTAGAGAGAT-TTTCCTTCAACAGCCTAACCTCCTT 177
Query 463 GAGCTCGCTGCCCCTGTTAAGATCTGCGGTGATATTCATGGTCAATACTCAGATTTATTG 522
||||||| || ||| | ||||||||||||||||||||||| |||||||| ||| |||||
Sbjct 178 GAGCTCGAAGCTCCTATCAAGATCTGCGGTGATATTCATGGACAATACTCTGATCTATTG 237
Query 523 AGGCT-TTTCGAGTATGGAGGTTTCCCTCCTGCAGCAAACTACTTATTCTTAGGAGATTA 581
||||| ||| ||||||||||| ||||| ||| |||| ||||| |||||||||||||||||
Sbjct 238 AGGCTGTTT-GAGTATGGAGGCTTCCCACCTACAGCTAACTATTTATTCTTAGGAGATTA 296
Query 582 CGTTGACCGCGGAAAGCAGAGTTTGGAGACTATTTGTCTTCTGCTTGCTTACAAGATCAA 641
||| |||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 297 CGTGGACCGCGGCAAGCAGAGTTTGGAGACTATTTGTCTTCTGCTTGCCTACAAAATCAA 356
Query 642 ATACCCTGAAAACTTTTTTC-TCTTAAGAGGAAACCATGAGTGTGCATCTATTAACAGAA 700
|||||| || |||||||||| |||| ||||||||||| || ||||| |||||||||||||
Sbjct 357 ATACCCCGAGAACTTTTTTCTTCTT-AGAGGAAACCACGAATGTGCTTCTATTAACAGAA 415
Query 701 TTTACGGATTCTATGACGAATGTAAACGAAGATTCAACGTGAAG-CTCTGGAAAGTGTTT 759
| || ||||||||||| ||||||||||| |||||| ||| || |||||||||||||||
Sbjct 416 TCTATGGATTCTATGATGAATGTAAACGTCGATTCAGTGTG-AGACTCTGGAAAGTGTTT 474
Query 760 ACCGATACTTTTAACTGTCTCCCTGTGGCTGCTGTCATAGATGAAAAGATACTT-TGTAT 818
|| ||| |||||||||||||||| || |||||||| ||||| || |||||| || |||||
Sbjct 475 ACAGATTCTTTTAACTGTCTCCCCGTCGCTGCTGTTATAGACGATAAGATA-TTATGTAT 533
Query 819 GCATGGTGGACTATCTCCTGAGTTGATCAATGTGGAACAAATTAAGAACA-TAGAGCGTC 877
||| ||||| || ||||| || |||| |||||||||| | |||||||||| || |||| |
Sbjct 534 GCACGGTGGGCTTTCTCCCGATTTGACCAATGTGGAAGAGATTAAGAACATTA-AGCGAC 592
Query 878 CAACTGATGTTCCAGACGCTGGTTTGCTCTGTGACCTTCTTTGGTCTGATCCTAGTAAAG 937
| || |||||||||||| |||||||||||||||| || |||||||||||||| || ||||
Sbjct 593 CTACCGATGTTCCAGACTCTGGTTTGCTCTGTGATCTGCTTTGGTCTGATCCAAGCAAAG 652
Query 938 ATGTCAAAGGCTGGGGGATGAATGATCGTGGTGTCTCCTACACTTTTGGTG-CTGACAAA 996
|||||||||| |||||||||||||||||||| ||||| ||||| ||||| | ||||||||
Sbjct 653 ATGTCAAAGGTTGGGGGATGAATGATCGTGGAGTCTCTTACACGTTTGG-GCCTGACAAA 711
Query 997 GTTGCTGAGTTTTTAATAAAGAATGATATGGA-TTTAGTCTGTCGTGCCCACCAGGTTGT 1055
|| || || ||| ||||||||||||||||||| | | |||| |||||||||||||||||
Sbjct 712 GTCGCCGAATTTCTAATAAAGAATGATATGGACCTCA-TCTGCCGTGCCCACCAGGTTGT 770
Query 1056 AGAGGATGGGTATGAGTTCTTT-GCTGATAGACAGCTTGTGACTATGTTTTCTGCTCCAA 1114
|||||||||||||||||| ||| || |||||||||||||| || || ||||||||||| |
Sbjct 771 AGAGGATGGGTATGAGTT-TTTCGCCGATAGACAGCTTGTTACGATATTTTCTGCTCCCA 829
Query 1115 ACTACTGTGGTGAATTTGACAATGCGGGTGCAT-TGATGAGTGTCGACGAAAGTTTAATG 1173
||||||| ||||||||||||||||| ||||| | |||||||||| || ||||||||||||
Sbjct 830 ACTACTGCGGTGAATTTGACAATGCTGGTGC-TATGATGAGTGTTGATGAAAGTTTAATG 888
Query 1174 TGCTCTTTCCAAATTCTTAAGCCTG-TGGATCGGAGGTCGCGGTTCTTTTGA 1224
||||||||||||||||||||||||| || |||| ||| | |||||||| |||
Sbjct 889 TGCTCTTTCCAAATTCTTAAGCCTGCTG-ATCGAAGGCCCCGGTTCTTATGA 939
> Ahg887874 jgi|Araly1|887874|Al_scaffold_0048_7
Length=879
Score = 702 bits (380), Expect = 0.0
Identities = 546/624 (88%), Gaps = 19/624 (3%)
Strand=Plus/Plus
Query 610 ACTATTTGTCTTCTGCTTGCTTACAAGATCAAATACCCTGAAAACTTTTTTC-TCTTAAG 668
|||||||||||||||||||| ||||| ||||||||||| || |||||||||| |||| ||
Sbjct 266 ACTATTTGTCTTCTGCTTGC-TACAAAATCAAATACCCCGAGAACTTTTTTCTTCTT-AG 323
Query 669 AGGAAACCATGAGTGTGCATCTATTAACAGAATTTACGGATTCTATGACGAATGTAAACG 728
||||||||| || ||||| |||||||||||||| || ||||||||||| |||||||||||
Sbjct 324 AGGAAACCACGAATGTGCTTCTATTAACAGAATCTATGGATTCTATGATGAATGTAAACG 383
Query 729 AAGATTCAACGTGAAG-CTCTGGAAAGTGTTTACCGATACTTTTAACTGTCTCCCTGTGG 787
|||||| ||| || ||||||||||||||||| ||| |||||||||||||||| || |
Sbjct 384 TCGATTCAGTGTG-AGACTCTGGAAAGTGTTTACAGATTCTTTTAACTGTCTCCCCGTCG 442
Query 788 CTGCTGTCATAGATGAAAAGATACTT-TGTATGCATGGTGGACTATCTCCTGAGTTGATC 846
||||||| |||||||| |||||| || |||||||| ||||| || ||||| || |||| |
Sbjct 443 CTGCTGTTATAGATGATAAGATA-TTATGTATGCACGGTGGGCTTTCTCCCGATTTGACC 501
Query 847 AATGTGGAACAAATTAAGAACA-TAGAGCGTCCAACTGATGTTCCAGACGCTGGTTTGCT 905
||||||||| | |||||||||| || |||| || || |||||||||||| ||||||||||
Sbjct 502 AATGTGGAAGAGATTAAGAACATTA-AGCGACCTACCGATGTTCCAGACTCTGGTTTGCT 560
Query 906 CTGTGACCTTCTTTGGTCTGATCCTAGTAAAGATGTCAAAGGCTGGGGGATGAATGATCG 965
|||||| || |||||||||||||| || |||||||||||||| |||||||||||||||||
Sbjct 561 CTGTGATCTGCTTTGGTCTGATCCAAGCAAAGATGTCAAAGGTTGGGGGATGAATGATCG 620
Query 966 TGGTGTCTCCTACACTTTTGGTG-CTGACAAAGTTGCTGAGTTTTTAATAAAGAATGATA 1024
||| ||||| ||||| ||||| | |||||||||| || || ||| |||||||||||||||
Sbjct 621 TGGAGTCTCTTACACGTTTGG-GCCTGACAAAGTCGCCGAATTTCTAATAAAGAATGATA 679
Query 1025 TGGA-TTTAGTCTGTCGTGCCCACCAGGTTGTAGAGGATGGGTATGAGTTCTTT-GCTGA 1082
|||| | | |||| ||||||||||||||||||||||||||||||||||| ||| || ||
Sbjct 680 TGGACCTCA-TCTGCCGTGCCCACCAGGTTGTAGAGGATGGGTATGAGTT-TTTCGCCGA 737
Query 1083 TAGACAGCTTGTGACTATGTTTTCTGCTCCAAACTACTGTGGTGAATTTGACAATGCGGG 1142
|||||||||||| || || ||||||||||| |||||||| ||||||||||||||||| ||
Sbjct 738 TAGACAGCTTGTTACGATATTTTCTGCTCCCAACTACTGCGGTGAATTTGACAATGCTGG 797
Query 1143 TGCAT-TGATGAGTGTCGACGAAAGTTTAATGTGCTCTTTCCAAATTCTTAAGCCTG-TG 1200
||| | |||||||||| || ||||||||||||||||||||||||||||||||||||| ||
Sbjct 798 TGC-TATGATGAGTGTTGATGAAAGTTTAATGTGCTCTTTCCAAATTCTTAAGCCTGCTG 856
Query 1201 GATCGGAGGTCGCGGTTCTTTTGA 1224
|||| ||| | |||||||| |||
Sbjct 857 -ATCGAAGGCCCCGGTTCTTATGA 879
Score = 220 bits (119), Expect = 2e-56
Identities = 180/209 (86%), Gaps = 6/209 (3%)
Strand=Plus/Plus
Query 286 ATGGCGCAACAAGGGCAGGGAAGCATGGACCCTGCTGTTCTCGACGACATCATTCGTCGT 345
||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||
Sbjct 1 ATGGCGCAACAAGGGCAGGGAAGCATGGACCCTGCCGTTCTCGATGATATCATTCGTCGT 60
Query 346 TTACTTG-ATTACCGAAACCCTAAAGC-TGGGACCAAACAAGCTATGCTCAACGATTCTG 403
|| ||| ||||| |||||||||| || ||| || || || | |||||||| ||| ||||
Sbjct 61 TTG-TTGGATTACAGAAACCCTAA-GCCTGGTACGAAGCAGGTTATGCTCACCGAGTCTG 118
Query 404 AGATCCGACAGCTTTGCTTTGTCTCTAGAGAGATATTTC-TTCAACAGCCTTGTCTTCTT 462
||||||||||||||||| | |||||||||||||| |||| ||||||||||| || |||
Sbjct 119 AGATCCGACAGCTTTGCATCGTCTCTAGAGAGAT-TTTCCTTCAACAGCCTAACCTCCTT 177
Query 463 GAGCTCGCTGCCCCTGTTAAGATCTGCGG 491
||||||| || ||| | |||||||||||
Sbjct 178 GAGCTCGAAGCTCCTATCAAGATCTGCGG 206
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59306511465
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5