BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G46830.1
Length=1238
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485055 jgi|Araly1|485055|fgenesh2_kg.5__1047__AT3G46830.1 1661 0.0
Ahg950651 jgi|Araly1|950651|scaffold_802538.1 739 0.0
> Ahg485055 jgi|Araly1|485055|fgenesh2_kg.5__1047__AT3G46830.1
Length=1193
Score = 1661 bits (899), Expect = 0.0
Identities = 1131/1233 (92%), Gaps = 56/1233 (5%)
Strand=Plus/Plus
Query 1 ACCGTATATTCACTTTATTGCTCCTCTCCTC-TT-TCTCACGAAGAAGAAGACGAAGCCC 58
||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||
Sbjct 1 ACCGTATATTCACTTTATTGCTCCTCTCCTCTTTCTCTCTCGAAGAAGAAGACGAAGCCC 60
Query 59 ATCAAATTAAACAAGAAAAATTCCATTTTCCTCCATTGATTGTGAGTGAGAACAAACATT 118
| ||||||||||||| || | ||| ||| ||| | ||||||||||||||
Sbjct 61 AACAAATTAAACAAG---AA----A-TTT--TCC----ATT-T---TGAGAACAAACATT 102
Query 119 TAAAG-CT-TCTTACTCAAAGTTTCTTTCTTTATAGATCTCAAAAAATTCGA--TATTTT 174
||||| || ||||| |||||||||| | |||||||||||| ||||| |||| | ||||
Sbjct 103 TAAAGCCTCTCTTAATCAAAGTTTCGTCCTTTATAGATCT-GAAAAACTCGATTTTTTTT 161
Query 175 TCTCGATTCATCCGCCATTAAGGT-------T--TTATTGCGAGATCGAAGAGAGAAGGA 225
|||||||||||||||||||||||| | |||||||||||||| |||| ||||||
Sbjct 162 TCTCGATTCATCCGCCATTAAGGTACACGAATCGTTATTGCGAGATCGGAGAGTGAAGGA 221
Query 226 G-AAAATGACGCATAGAGTAGATCAGGAATATGATTATTTGTTTAAGATTGTGTTGATTG 284
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 222 GAAAAATGACGCATAGAGTAGATCAAGAATATGATTATTTGTTTAAGATTGTGTTGATTG 281
Query 285 GTGATTCTGGTGTTGGGAAATCGAATATCTTGTCGAGATTCACCAGGAATGAGTTTTGCT 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 282 GTGATTCTGGTGTTGGGAAATCGAATATCTTGTCGAGATTCACCAGGAATGAGTTTTGCT 341
Query 345 TGGAATCTAAATCCACTATTGGTGTTGAATTCGCCACCAGAACTACTCAGGTTGAAGGAA 404
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 342 TGGAGTCTAAATCCACTATTGGTGTTGAATTCGCTACCAGAACTACTCAGGTTGAAGGAA 401
Query 405 AGACCATTAAGGCCCAGATCTGGGACACTGCAGGTCAGGAGAGGTACAGGGCGATCACAA 464
|||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
Sbjct 402 AGACAATTAAGGCCCAGATCTGGGACACTGCAGGTCAGGAGCGGTACAGGGCAATCACCA 461
Query 465 GCGCGTATTACAGAGGCGCAGTGGGTGCACTTCTTGTCTACGACATTACTAAGAGACAGA 524
| || ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 462 GTGCTTATTACAGAGGCGCAGTGGGTGCACTTCTTGTCTATGACATTACCAAGAGACAGA 521
Query 525 CCTTTGACAATGTTTTAAGGTGGCTGCGCGAACTGAGAGACCATGCAGATTCCAACATTG 584
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 522 CTTTTGACAATGTTTTAAGGTGGCTGCGTGAACTGAGAGACCATGCAGATTCCAACATTG 581
Query 585 TGATCATGATGGCTGGGAACAAATCCGATCTGAACCACTTGAGATCCGTTGCTGAGGAAG 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 582 TGATCATGATGGCTGGGAACAAATCCGATCTGAACCACTTGAGATCCGTTGCTGAGGAAG 641
Query 645 ATGGTCAAAGTTTGGCTGAGAAGGAAGGTCTCTCTTTCCTGGAGACATCTGCTCTTGAAG 704
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 642 ATGGTCAGAGTTTGGCTGAGAAGGAAGGTCTCTCTTTCCTGGAGACATCAGCTCTTGAAG 701
Query 705 CAACAAACGTCGAGAAAGCGTTTCAGACCATCTTAGGTGAGATCTACCATATCATAAGCA 764
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 702 CAACAAACGTTGAGAAAGCGTTTCAGACCATCTTAGGAGAGATCTACCATATCATAAGCA 761
Query 765 AAAAGGCACTGGCTGCACAAGAAGCAGCAGCAGCTAATTCTGCAATCCCTGGGCAAGGAA 824
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 762 AAAAGGCACTGGCTGCACAAGAAGCAGCAGCAGCTAATTCCGCAATTCCTGGGCAAGGAA 821
Query 825 CTACGATTAACGTCGATGACACATCTGGAGGCGCGAAACGAGCATGTTGCTCTTCTTAAA 884
||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 822 CTACGATTAACGTTGATGACACATCTGGAGGCGCGAAAAGGGCATGTTGCTCTTCTTAAA 881
Query 885 CTAAAGGTAAACTGTTTATTTCGGTTGCTCCTTGTTCAGAGATTCAAACTTTTGTTTTCA 944
|||||||||||||||||| |||| ||| ||||| |||| |||||||||||||||||||||
Sbjct 882 CTAAAGGTAAACTGTTTACTTCGTTTGTTCCTTCTTCAAAGATTCAAACTTTTGTTTTCA 941
Query 945 CTGGCTTCTCTTCTTTTCAAGTTTTGGCTGATGAAACGTAACTATGCAAGACTATGTAGA 1004
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 942 CTGGCTTCTCTTCTTTTCAAGTTTTGGCTGATGAAACGTAACTATGCAAGACTATGTAGA 1001
Query 1005 ATACTCTGTTTTTATTCTCTTCGGTTTGGGGTTTGTGTTCAGTTTAAAGCTTGTTAGTAG 1064
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1002 ATACTCTGTTTTTATGCTCTTCGGTT-GGGGTTTGTGTTCAGTTTAAAGCTTGTTAGTAG 1060
Query 1065 TATACTTAGAATCTTCTGGTGCTTGCTTGCTTTCCCTTCTTCTTCCCTTGGTGTGTTTCT 1124
| |||||||||||||||||||||||||| || || ||||||||
Sbjct 1061 TGTACTTAGAATCTTCTGGTGCTTGCTT--TT-----------------GGCGTGTTTCT 1101
Query 1125 ATTGATTTCTGGTTTATAAAGTATTTTTTCTATCTCCGGTTTAGTCCGGTTCGTCTTGGC 1184
|| |||||||||||||||||||||||| | |||||||||||| ||||||||||||||||
Sbjct 1102 CTTCATTTCTGGTTTATAAAGTATTTTTAC-ATCTCCGGTTTATTCCGGTTCGTCTTGGC 1160
Query 1185 TTTGTTTAATCAAATCATTGATTCCTCTCTTAT 1217
|| ||||||||||||||||||||| ||||||||
Sbjct 1161 TTGGTTTAATCAAATCATTGATTCATCTCTTAT 1193
> Ahg950651 jgi|Araly1|950651|scaffold_802538.1
Length=694
Score = 739 bits (400), Expect = 0.0
Identities = 579/666 (87%), Gaps = 9/666 (1%)
Strand=Plus/Plus
Query 222 AGGAGAAAATGACGCATAGAGTAGATCAGGAATATGATTATTTGTTTAAGATTGTGTTGA 281
|||| |||||| ||||||| || || ||||| ||||||||||| |||||||| |||||||
Sbjct 14 AGGA-AAAATGGCGCATAGGGTTGAACAGGATTATGATTATTTATTTAAGATCGTGTTGA 72
Query 282 TTGGTGATTCTGGTGTTGGGAAATCGAATATCTTGTCGAGATTCACCAGGAATGAGTTTT 341
||||||||||||||||||||||||| || |||||||| |||||||| |||||||||||||
Sbjct 73 TTGGTGATTCTGGTGTTGGGAAATCAAACATCTTGTCTAGATTCACAAGGAATGAGTTTT 132
Query 342 GCTTGGAATCTAAATCCACTATTGGTGTTGAATTCGCCACCAGAACTACT-CAGGTTGAA 400
| ||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 133 GTTTGGAATCTAAGTCCACTATTGGTGTTGAATTCGCCACCAGAACT-CTTCAGGTTGAA 191
Query 401 GGAAAGACCATTAAGGCCCAGATCTGGGACACTGCAGGTCAGGAGAGGTACAGGGCGATC 460
|||||||| |||| ||||||||||||||||||||||| || ||| ||||||| || |||
Sbjct 192 GGAAAGACTGTTAAAGCCCAGATCTGGGACACTGCAGGGCAAGAGCGGTACAGAGCTATC 251
Query 461 ACAAGCGCGTATTACAGAGGCGCAGTGGGTGCACTTCTTGTCTACGACATTACTAAGAGA 520
|||||||| || ||||||||||| || ||||| ||||||||||| |||||||| || |||
Sbjct 252 ACAAGCGCTTACTACAGAGGCGCGGTAGGTGCGCTTCTTGTCTATGACATTACCAAAAGA 311
Query 521 CAGACCTTTGACAATGTTTTAAGGTGGCTGCGCGAACTGAGAGACCATGCAGATTCCAAC 580
|| |||||||||||||| ||||||||||| || ||||| |||||||||||||||||||||
Sbjct 312 CAAACCTTTGACAATGTCTTAAGGTGGCTACGTGAACTAAGAGACCATGCAGATTCCAAC 371
Query 581 ATTGTGATCATGATGGCTGGGAACAAATCCGATCTGAACCACTTGAGATCCGTTGCTGAG 640
|| |||||||||||||||||||||||| | ||||| |||||||||||||| |||||||||
Sbjct 372 ATAGTGATCATGATGGCTGGGAACAAAGCTGATCTAAACCACTTGAGATCAGTTGCTGAG 431
Query 641 GAAGATGGTCAAAGTTTGGCTGAGA-AGGAAGGTCTCTCTTTCCTGGAGACATCTGCTCT 699
|||||||| || | | | ||||||| || |||||||||||||| ||||||||||||||||
Sbjct 432 GAAGATGGACAGACTCTAGCTGAGACAG-AAGGTCTCTCTTTCTTGGAGACATCTGCTCT 490
Query 700 TGAAGCAACAAACGTCGAGAAAGCGTTTCAGACCATCTTAGGTGAGATCTACCATATCAT 759
|||||| || || || || ||||| ||||| || | |||| ||||| ||||| |||||
Sbjct 491 TGAAGCCACCAATGTTGAAAAAGCATTTCAAACTGTGTTAGCAGAGATTTACCACATCAT 550
Query 760 AAGCAAAAAGGCACTGGCTGCACAAGAAGCAGCAGCAGCTAATTCTGCAATCCCTGGGCA 819
|||||||| || ||||||| ||||||||||| || |||||||| || || || |||||
Sbjct 551 CAGCAAAAAAGCTTTGGCTGCTCAAGAAGCAGCGGCTGCTAATTCCGCGATTCCGGGGCA 610
Query 820 AGGAACTACGATTAACGTCGATGACACATCTGGAGGC-G-CGAAACGAGCATGTTGCTCT 877
|||||| ||||||||||| | |||||||||||||| | | | ||| ||| || ||||||
Sbjct 611 AGGAACAACGATTAACGTTGGTGACACATCTGGAG-CTGGCAAAA-GAGGTTGCTGCTCT 668
Query 878 TCTTAA 883
|||||
Sbjct 669 ACTTAA 674
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46243098321
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5