BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G46840.1
Length=2217
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485057 jgi|Araly1|485057|fgenesh2_kg.5__1049__AT3G46850.1 3382 0.0
Ahg897511 jgi|Araly1|897511|Al_scaffold_0005_1477 3027 0.0
Ahg937406 jgi|Araly1|937406|scaffold_501597.1 499 3e-140
Ahg950603 jgi|Araly1|950603|scaffold_802490.1 187 3e-46
> Ahg485057 jgi|Araly1|485057|fgenesh2_kg.5__1049__AT3G46850.1
Length=2220
Score = 3382 bits (1831), Expect = 0.0
Identities = 2095/2224 (94%), Gaps = 11/2224 (0%)
Strand=Plus/Plus
Query 1 ATGACAAAACCTGCTGTCTCCTATTGTCTCCTCTCATGTATCTTTGCCTTGCTTGTTGTG 60
||| ||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 1 ATGGCAAAACCTGTTGTCTCCTATTGTCTCCTCTCATGTATATTTGCCTTGCTTTTTGTG 60
Query 61 AGTTTCGCTTCAGCAGACAAAGATGATCAAGACAAACAGGAGTATATAGTATACATGGGT 120
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 61 AGTTTCGCTTCAGCAGAGAAAGATGATCAAGACAAACAGGTGTATATAGTATACATGGGT 120
Query 121 GCACTTCCTGCTCGTGTTGACTACATGCCTATGTCCCATCACACTAGTATTCTTCAAGAT 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 121 GCACTTCCTGCTCGTGTTGACTACATGCCAATGTCCCATCACACTAGTATTCTTCAAGAT 180
Query 181 GTCACCGGAGAGAGTTCGATCGAGGATCGTTTGGTTAGGAATTATAAAAGGAGTTTCAAC 240
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 181 GTCACCGGAGAGAGTTCGATCGAGGATCGTTTGGTTAGGAACTATAAAAGGAGTTTCAAC 240
Query 241 GGATTCGCAGCCCGGCTAACCAAATCCGAAAGAGAGATACTAGCAAGTATGGACGAAGTT 300
||||| || ||| |||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 241 GGATTTGCGGCCTGGCTAACCGAATCCGAAAGAGAGATACTAGCTAGTATGGACGAAGTT 300
Query 301 GTGTCTGTGTTTCCTAACAAGAAACTGAAGCTCCAAACAACAACGTCATGGAATTTCATG 360
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 301 GTGTCTGTGTTTCCTAACAAGAAACTAAAGCTCCAAACAACAACGTCATGGAATTTCATG 360
Query 361 GGCCTCAAGGAAAGCAAACGTACAAAGCGAAATACTATCATAGAGAGTGATACAATCATC 420
|||||||||||| ||||| | || |||||||| ||||||||||||| ||||||||||||
Sbjct 361 GGCCTCAAGGAAGGCAAAAGAACGAAGCGAAACGCTATCATAGAGAGCGATACAATCATC 420
Query 421 GGTGTCATCGACAGTGGAATCTATCCGGAATCTGATAGTTTTAGTGGCAAAGGCTTTGGT 480
|||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 421 GGTGTCATTGACAGTGGAATCTATCCGGAATCAGACAGTTTTAGTGGCAAAGGCTTTGGT 480
Query 481 CCTCCTCCTAAAAAATGGAAAGGTGTTTGCAAAGGCGGCAAAAACTTCACTTGGAACAAC 540
||||||||||||||||||| |||||||||| |||||||||||||||| ||||| ||||||
Sbjct 481 CCTCCTCCTAAAAAATGGAGAGGTGTTTGCGAAGGCGGCAAAAACTTTACTTGCAACAAC 540
Query 541 AAGCTTATTGGAGCACGGTACTACACCCCCAAACTAGAGGGGTTTCCTGAGTCAGCGAGG 600
||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||
Sbjct 541 AAGCTTATTGGAGCACGATACTACACACCCAAACTAGAGGGTTTTCCTGAGTCAGCGAGG 600
Query 601 GACTACATGGGACATGGATCGCACACAGCATCCACGGCTGCTGGAAATGCTGTGAAGCAT 660
||||||||||||||||||||||||||||||||||| || ||||| || |||||||||||
Sbjct 601 GACTACATGGGACATGGATCGCACACAGCATCCACCGCGGCTGGGAACGCTGTGAAGCAC 660
Query 661 GTGAGCTTTTACGGCCTCGGCAATGGAACCGCAAGAGGTGGCGTTCCAGCTGCAAGAATA 720
||||||||||| || || || |||||||| || |||||||||||||||||||||||||||
Sbjct 661 GTGAGCTTTTATGGACTTGGTAATGGAACAGCCAGAGGTGGCGTTCCAGCTGCAAGAATA 720
Query 721 GCGGTTTATAAAGTATGTGACCCTGGCGTCGATGGGTGCACAACTGACGGAATTCTAGCG 780
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 721 GCGGTTTATAAAGTATGTGACCCTGGTGTCGATGGGTGCACAACTGACGGAATTCTAGCC 780
Query 781 GCATTTGATGATGCCATAGCGGATAAGGTGGACATCATTACCATATCCATTGGTGGTGAT 840
|||||||| |||||||||||||||||||||||| ||||||| |||||||||||||| ||
Sbjct 781 GCATTTGACGATGCCATAGCGGATAAGGTGGACCTCATTACAATATCCATTGGTGGGGAC 840
Query 841 AATAG-TTCGCCTTTTGAGGAGGACCCTATCGCGATCGGGGCTTTCCATGCCATGGCCAA 899
|| || |||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 841 AA-AGGTTCGCCTTTTGAGGTGGACCCGATCGCGATCGGGGCTTTCCATGCCATGGCCAA 899
Query 900 GGGAATCCTCATAGTGAATTCCGCAGGAAACAGTGGTCCAGAACCTAGCACGGTCGCGAG 959
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 900 GGGAATCCTCATAGTGAATTCCGCAGGAAACAATGGTCCTGAACCTAGCACGGTCGCGAG 959
Query 960 TATTGCGCCGTGGATGTTCACTGTTGCTGCTAGTAATACTAACCGTGCGTTTGTCACTAA 1019
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 960 CATTGCGCCGTGGATCTTCACTGTTGCTGCTAGTAATACTAACCGTGCGTTTGTCACCAA 1019
Query 1020 AGTTGTTCTCGGAAACGGCAAGACAGTTG-G--AAGATCGGTAAATTCGTTCGATCTTAA 1076
||||| ||||||||||||||||||||||| | |||||||||||||||||| |||||||
Sbjct 1020 AGTTGCTCTCGGAAACGGCAAGACAGTTGTGGGAAGATCGGTAAATTCGTTTAATCTTAA 1079
Query 1077 CGGAAAGAAGTACCCTCTAGTATACGG-GAAATCAGCTTCAAGTAGTTGTGGTGCTGCTT 1135
|||||||||||||||| |||||||||| ||| ||||||||||||||||||| ||||||||
Sbjct 1080 CGGAAAGAAGTACCCTTTAGTATACGGAGAA-TCAGCTTCAAGTAGTTGTGATGCTGCTT 1138
Query 1136 CCGCCGGGTTTTGCTCACCAGGGTGCCTAGATAGTAAACGTGTGAAAGGAAAGATTGTTT 1195
| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1139 CTGCCGGGTTTTGCTCACCAGGGTGTCTAGATAGTAAACGTGTGAAAGGAAAGATTGTGT 1198
Query 1196 TATGTGATTCCCCGCAAAATCCCGATGAAGCTCAAGCTATGGGAGCCATTGCATCTATTG 1255
| |||||||||||||||||||| |||||||||||||||||||||||| | ||||| ||||
Sbjct 1199 TGTGTGATTCCCCGCAAAATCCAGATGAAGCTCAAGCTATGGGAGCCGTCGCATCCATTG 1258
Query 1256 TTAGGAGCCACCGTACAGACGTGGCAAGTATCTTCTCTTTTCCAGTCTCTGTTCTATTGG 1315
|||||||| |||| ||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 1259 CTAGGAGCCGCCGTGCAGACGTGGCAAGTATCTTCTCTTTTCCAGTCTCTATTCTATCGG 1318
Query 1316 AAGACGACTATAACACTGTTCTCTCGTATATGAACTCCACCAAGAATCCCAAAGCGGCTG 1375
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1319 AAGACGACTATAACACTGTTCTCTCGTATATGAACTCCACCAAAAATCCCAAAGCGGCTG 1378
Query 1376 TTCTGAAAAGTGAGACAATCTTTAACCAGAGAGCTCCCGTCGTGGCTTCCTACTTTTCTC 1435
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1379 TTCTAAAAAGTGAGACAATCTTTAACCAGAGAGCTCCCGTCGTGGCTTCCTACTCTTCCC 1438
Query 1436 GTGGCCCAAACACAATCATTCCTGACATATTGAAGCCGGATATAACGGCACCAGGATCAG 1495
|||||||||||||||||||||||||||| |||||||||||| |||| || ||||||||||
Sbjct 1439 GTGGCCCAAACACAATCATTCCTGACATTTTGAAGCCGGATGTAACAGCGCCAGGATCAG 1498
Query 1496 AGATCGTAGCTGCTTATTCTCCTGATGCCCCACCAAGCATATCAGATACAAGACGTGTAA 1555
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1499 AGATCCTAGCTGCTTATTCTCCTGATGCCCCACCAAGCAAATCAGATACAAGACGTGTAA 1558
Query 1556 AGTACTCCGTTGATACCGGAACTTCAATGTCTTGTCCGCATGTTGCTGGTGTAGCTGCCT 1615
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 AGTACTCCGTTGAGACCGGAACTTCAATGTCTTGTCCGCATGTTGCTGGTGTAGCTGCCT 1618
Query 1616 ACTTAAAATCGTTTCACCCACGCTGGTCTCCCTCCATGATCCAATCAGCCATCATGACTA 1675
|| ||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1619 ACCTAAAATCATTTCACCCACGCTGGTCTCCTTCCATGATCCAATCCGCCATCATGACTA 1678
Query 1676 CCGCTTGGCCAATGAATGCATCTACTTCTCCATTTAACGAGTTGGCCGAGTTTGCTTACG 1735
|||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1679 CCGCTTGGCCGATGAATGCATCAACTTCTCCGTTTAACGAGTTGGCCGAGTTTGCTTACG 1738
Query 1736 GAGCTGGCCATGTCGATCCCATAACTGCAATTCATCCTGGACTAGTCTATGAAGCTAATA 1795
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1739 GAGCTGGCCATGTCGATCCAATAACTGCAATTCATCCTGGACTAGTCTATGAAGCTAATA 1798
Query 1796 AATCCGACCACATCGCCTTTCTCTGCGGCTTGAACTACA-CTGCAAAGAACTTAAGACTC 1854
|||| |||||||||||||||||||| ||||||||||||| | | ||||||||||||||||
Sbjct 1799 AATCTGACCACATCGCCTTTCTCTGTGGCTTGAACTACAACGG-AAAGAACTTAAGACTC 1857
Query 1855 ATCTCCGGTGATAGCAGCAGTTGCACAAAAGAACAGACTAAATCGCTACCCCGAAACTTA 1914
||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1858 ATCTCCGGTGATAACAGCAGTTGCACTAAAGAACAGACCAAATCGCTACCCCGAAACTTA 1917
Query 1915 AACTATCCTTCGATGACTGCTCAAGTATCGGCGGCAAAACCATTCAAAGTGATTTTCCGT 1974
|||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||
Sbjct 1918 AACTATCCTTCGATGACTGCTCAAGTATCGGCAGCAAAACCGTTCAAAGTGACTTTCCGT 1977
Query 1975 AGAACAGTCACTAACGTCGGTAGGCCTAACGCTACATACAAAGCAAAGGTAGTCGGTTCT 2034
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1978 AGAACAGTCACTAACGTCGGTAGGCCTAACGCTACATACAAAGCAAAGGTAGTCGGATCT 2037
Query 2035 AAACTCAAAGTCAAGGTTGTTCCGGCA-GTCTTGTCTTTAAAGTCATTGTACGAGAAGAA 2093
|| | ||||||||||||| |||| | | ||||||||| ||||||||||||||||||| ||
Sbjct 2038 AAGCACAAAGTCAAGGTTATTCCAG-ATGTCTTGTCTCTAAAGTCATTGTACGAGAAAAA 2096
Query 2094 GTCCTTCACGGTAACAGCTTCCGGCGCCGGTCCCAAAGCTGAAAATCTTGTCTCCGCACA 2153
||||||||||||||| | ||| || || ||||||||||||||||| ||||| || |||||
Sbjct 2097 GTCCTTCACGGTAACCGTTTCAGGTGCGGGTCCCAAAGCTGAAAAGCTTGTGTCGGCACA 2156
Query 2154 GCTGATCTGGTCTGATGGTGTCCACTTTGTGAGAAGCCCCATTGTTGTTTATGCTACGAA 2213
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2157 GCTGATCTGGTCTGATGGTGTTCACTTTGTGAGAAGCCCCATTGTTGTTTATGCTACGAA 2216
Query 2214 CTGA 2217
||||
Sbjct 2217 CTGA 2220
> Ahg897511 jgi|Araly1|897511|Al_scaffold_0005_1477
Length=2220
Score = 3027 bits (1639), Expect = 0.0
Identities = 2036/2229 (91%), Gaps = 21/2229 (1%)
Strand=Plus/Plus
Query 1 ATGACAAAACCTGCTGTCTCCTATTGTCTCCTCTCATGTATCTTTGCCTTGCTTGTTGTG 60
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 ATGGCAAAACCTGCTGTCTCCTATTGTCTCCTCTCATGTATCTTTGCCTTGCTTCTTGTG 60
Query 61 AG-TTTCGCTTCAGCAGACAAAGATGATCAAGACAAACAGGAGTATATAGTATACATGGG 119
|| |||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 AGTTTTC-CTTCACCAGACAAAGATGATCAAGACAAACAGGTGTATATAGTATACATGGG 119
Query 120 TGCACTTCCTGCTCGTGTTGACTACATGCCTATGTCCCATCACACTAGTATTCTTCAAGA 179
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 120 TGCACTTCCTGCTCGTGTTGACTACATGCCAATGTCCCATCACACTAGTATTCTTCAAGA 179
Query 180 TGTCACCGGAGAGAGTTCGATCGAGGATCGTTTGGTTAGGAATTATAAAAGGAGTTTCAA 239
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 180 TGTCATCGGAGAGAGTTCGATCAAGGATCGTTTGGTTAGGAATTATAAAAGGAGTTTCAA 239
Query 240 CGGATTCGCAGCCCGGCTAACCAAATCCGAAAGAGAGATACTAGCAAGTATGGACGAAGT 299
||||||||||||| ||||||| |||| ||||||| ||||||||||| ||||||||||||
Sbjct 240 CGGATTCGCAGCCAGGCTAACTGAATCAGAAAGAGCGATACTAGCAAATATGGACGAAGT 299
Query 300 TGTGTCTGTGTTTCCTAACAAGAAACTGAAGCTCCAAACAACAACGTCATGGAATTTCAT 359
||| ||||||||||||| ||||||||| |||| |||||||||||| || |||||||||||
Sbjct 300 TGTATCTGTGTTTCCTAGCAAGAAACTAAAGCCCCAAACAACAACCTCGTGGAATTTCAT 359
Query 360 GGGCCTCAAGGAAAGCAAACGTACAAAGCGAAA-TACTATCATAGAGAGTGATACAATCA 418
||| ||||||||| ||||||||||||||||||| | || |||||||||| ||||||||||
Sbjct 360 GGGTCTCAAGGAAGGCAAACGTACAAAGCGAAACT-CTCTCATAGAGAGCGATACAATCA 418
Query 419 TCGGTGTCATCGACAGTGGAATCTATCCGGAATCTGATAGTTTTAGTGGCAAAGGCTTTG 478
|||||||||| |||||||||||||| || ||||| || || || || |||||||||||||
Sbjct 419 TCGGTGTCATTGACAGTGGAATCTACCCTGAATCGGACAGCTTCAGCGGCAAAGGCTTTG 478
Query 479 GTCCTCCTCCTAAAAAATGGAAAGGTGTTTGCAAAGGCGGCAAAAACTTCACTTGGAACA 538
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||
Sbjct 479 GTCCTCCTCCTAAAAAATGGAAAGGTGTTTGCGAAGGCGGCGAAAACTTCACTTGCAACA 538
Query 539 ACAAGCTTATTGGAGCACGGTACTACACCCCCAAACTAGAGGGGTTTCCTGAGTCAGCGA 598
|||||||||||||||||||||||||||| ||| |||| | ||||||||| | |||||| |
Sbjct 539 ACAAGCTTATTGGAGCACGGTACTACACACCCGAACTGGTGGGGTTTCCGGCGTCAGCCA 598
Query 599 GGGACTACATGGGACATGGATCGCACACAGCATCCACGGCTGCTGGAAATGCTGTGAAGC 658
|||| ||| ||||||||| |||||| ||||||||||| |||||||| ||||||||||
Sbjct 599 TGGACAACACGGGACATGGCTCGCACTGTGCATCCACGGCGGCTGGAAACGCTGTGAAGC 658
Query 659 ATGTGAGCTTTTACGGCCTCGGCAATGGAACCGCAAGAGGTGGCGTTCCAGCTGCAAGAA 718
|||||||||||||||| ||||| |||||||| || |||||||||||||||||||||||||
Sbjct 659 ATGTGAGCTTTTACGGGCTCGGTAATGGAACTGCGAGAGGTGGCGTTCCAGCTGCAAGAA 718
Query 719 TAGCGGTTTATAAAGTATGTGACCCTGGCGTCGATGGGTGCACAACTGACGGAATTCTAG 778
||||||||||||||||||||||| ||||||| || |||||||| |||| ||||||||||
Sbjct 719 TAGCGGTTTATAAAGTATGTGACGTTGGCGTCAATAGGTGCACAGCTGAAGGAATTCTAG 778
Query 779 CGGCATTTGATGATGCCATAGCGGATAAGGTGGACATCATTACCATATCCATTGGTG-GT 837
| ||||||||||||||||||||||||||||||||| | |||||||||||||| |||| |
Sbjct 779 CCGCATTTGATGATGCCATAGCGGATAAGGTGGACCTAATTACCATATCCATCGGTGCG- 837
Query 838 GATAATAGTTCG-CCTTTTGAGGAGGAC-CCTATCGCGATCGGGGCTTTCCATGCCATGG 895
||| | ||| | || ||||||| |||| || |||||||||||||||||||||||||||
Sbjct 838 GATGA-GGTTGGTCCATTTGAGGTGGACACC-CTCGCGATCGGGGCTTTCCATGCCATGG 895
Query 896 CCAAGGGAATCCTCA-TAGTGAATTCCGCAGGAAACAGTGGTCCAGAACCTAGCACGGTC 954
|| |||||||||||| | ||| | ||||||||||| ||||||||||| ||||||||||
Sbjct 896 CCGAGGGAATCCTCACT-GTGGCTAGCGCAGGAAACAATGGTCCAGAACGTAGCACGGTC 954
Query 955 GCGAGTATTGCGCCGTGGATGTTCACTGTTGCTGCTAGTAATACTAACCGTGCGTTTGTC 1014
| ||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 955 GTGAGCATTGCGCCGTGGATCTTCACTGTTGCTGCTAGTAATACTAACCGTGCATTTGTC 1014
Query 1015 ACTAAAGTTGTTCTCGGAAACGGCAAGAC-A--GTTGGAAGATCGGTAAATTCGTTCGAT 1071
|| |||||| ||||||||||||||||||| | || |||||||||||||||||||| |||
Sbjct 1015 ACCAAAGTTTTTCTCGGAAACGGCAAGACAATTGTGGGAAGATCGGTAAATTCGTTTGAT 1074
Query 1072 CTTAACGGAAAGAAGTACCCTCTAGTATACGGGAAATCAGCTTCAAGTAGTTGTGGTGCT 1131
|| ||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 1075 CTAAACGGAAGGAAGTACCCTCTAGTATACGGAAAATCAGCTTCAAGTAGTTGTGATGCT 1134
Query 1132 GCTTCCGCCGGGTTTTGCTCACCAGGGTGCCTAGATAGTAAACGTGTGAAAGGAAAGATT 1191
||| | ||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1135 GCTGCAGCCAGGTTTTGCTCACCAGGGTGTCTAGACAGTAAACGTGTGAAAGGAAAGATT 1194
Query 1192 GTTTTATGTGATTCCCCGCAAAATCCCGATGAAGCTCAAGCTATGGGAGCCATTGCATCT 1251
|| |||||||||||||| ||||||||||| ||||||||||||||||||||| | |||||
Sbjct 1195 GTGTTATGTGATTCCCCACAAAATCCCGAAGAAGCTCAAGCTATGGGAGCCGTCGCATCC 1254
Query 1252 ATTGTTAGGAGCCACCGT-ACAGACGTGGCAAGTATCTTCTCTTTTCCAGTCTCTGTTCT 1310
|||||||| |||| | || | ||||||| |||||||||||||||||||||||||| ||||
Sbjct 1255 ATTGTTAGTAGCCGCAGTGA-AGACGTGACAAGTATCTTCTCTTTTCCAGTCTCTCTTCT 1313
Query 1311 ATTGGAAGACGACTATAACACTGTTCTCTCGTATATGAACTCCACCAAGAATCCCAAAGC 1370
|| ||||||||||||||||| ||| ||||| |||||||||||||| || || ||||||||
Sbjct 1314 ATCGGAAGACGACTATAACATTGTCCTCTCATATATGAACTCCACAAAAAACCCCAAAGC 1373
Query 1371 GGCTGTTCTGAAAAGTGAGACAATCTTTAACCAGAGAGCTCCCGTCGTGGCTTCCTACTT 1430
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1374 AGCTGTTCTGAGAAGTGAGACAATCTTTAACCAGAGAGCTCCTGTCGTGGCTTCCTACTC 1433
Query 1431 TTCTCGTGGCCCAAACACAATCATTCCTGACATATTGAAGCCGGATATAACGGCACCAGG 1490
|||||||||||||||| ||||||||| ||| || ||||||||||||||||| || || ||
Sbjct 1434 TTCTCGTGGCCCAAACCCAATCATTCATGATATTTTGAAGCCGGATATAACAGCGCCGGG 1493
Query 1491 ATCAGAGA-TCGTAGCTGCTTATTCTCCTGATGCCCCACCAAGCATATCAGATACAAGAC 1549
|||||||| || | ||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1494 ATCAGAGATTC-TTGCTGCTTATTCTCCTTATGCCCCACCAAGCGTATCAGATACAAGAC 1552
Query 1550 GTGTAAAGTACTCCGTTGATACCGGAACTTCAATGTCTTGTCCGCATGTTGCTGGTGTAG 1609
|||||||||| | ||| || |||||| |||||||||||||| || |||||||||||||
Sbjct 1553 ATGTAAAGTACGCAGTTCTTAGCGGAACCTCAATGTCTTGTCCCCACGTTGCTGGTGTAG 1612
Query 1610 CTGCCTACTTAAAATCGTTTCACCCACGCTGGTCTCCCTCCATGATCCAATCAGCCATCA 1669
| |||||| ||||| |||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1613 CCGCCTACCTAAAAACGTTTCACCCACGCTGGTCTCCTTCCATGATCCAATCCGCCATCA 1672
Query 1670 TGACTACCGCTTGGCCAATGAATGCATCTACTTCTCCATTTAACGAGTTGGCCGAGTTTG 1729
|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1673 TGACTACCGCGTGGCCAATGAATGCATCTACTTCTCCGTTTAACGAGTTGGCCGAGTTTT 1732
Query 1730 CTTACGGAGCTGGCCATGTCGATCCCATAACTGCAATTCATCCTGGACTAGTCTATGAAG 1789
|||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 1733 CTTACGGAGCGGGCCATGTCGATCCCATAGCTGTAATTCATCCTGGACTAGTCTATGAAG 1792
Query 1790 CTAATAAATCCGACCACATCGCCTTTCTCTGCGGCTTGAACTACACTGCAAAGAACTTAA 1849
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||
Sbjct 1793 CTAATAAATCCGACCACATCGCCTTTCTTTGCGGCTTGAACTACACTGGAAAGAAATTAA 1852
Query 1850 GACTCATCTCCGGTGATAGCAGCAGTTGCACAAAAGAACAGACTAAATCGCTACCCCGAA 1909
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1853 GGCTCATCTCCGGTGATAGCAGCAGTTGCACCAAAGAACAGACTAAATCGCTACCCCGAA 1912
Query 1910 ACTTAAACTATCCTTCGATGACTGCTCAAGTATCGGCGGCAAAACCATTCAAAGTGATTT 1969
|||||||||||||||||||||||||||||||||||||||||||||| || ||||| | ||
Sbjct 1913 ACTTAAACTATCCTTCGATGACTGCTCAAGTATCGGCGGCAAAACCGTTGAAAGTAACTT 1972
Query 1970 TCCGTAGAACAGTCACTAACGTCGGTAGGCCTAACGCTACATACAAAGCAAAGGTAGTCG 2029
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1973 TCCGTAGAACAGTCACTAACGTCGGTAGGCCTAACGCTACATACAAAGCAAAGGTAGTTG 2032
Query 2030 GTTCTAAACTCAAAGTCAAGGTTGTTCCGG-CAGTCTTGTCTTTAAAGTCATTGTACGAG 2088
| ||||||||||||||||||||| | || | | ||||||||||| ||||||||| |||
Sbjct 2033 GATCTAAACTCAAAGTCAAGGTTATCCCAGAC-GTCTTGTCTTTTTGGTCATTGTATGAG 2091
Query 2089 AAGAAGTCCTTCACGGTAACAGCTTCCGGCGCCGGTCCCAAAGCTGAAAATCTTGTCTCC 2148
|||||||||||||||||||| | ||| ||||||| |||||||||| |||| ||||| |||
Sbjct 2092 AAGAAGTCCTTCACGGTAACCGTTTCAGGCGCCGTTCCCAAAGCTAAAAAGCTTGTGTCC 2151
Query 2149 GCACAGCTGATCTGGTCTGATGGTGTCCACTTTGTGAGAAGCCCCATTGTTGTTTATGCT 2208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2152 GCACAGCTGATCTGGTCTGATGGTGTCCACTTTGTGAGAAGCCCCATTGTTGTTTATGCT 2211
Query 2209 ACGAACTGA 2217
| |||||||
Sbjct 2212 AAGAACTGA 2220
> Ahg937406 jgi|Araly1|937406|scaffold_501597.1
Length=1160
Score = 499 bits (270), Expect = 3e-140
Identities = 389/445 (87%), Gaps = 14/445 (3%)
Strand=Plus/Plus
Query 845 GTTCGCCTTTTGAGGAGGACCCTATCGCGATCGGGGCTTTCCATGCCATGGCCAAGGGAA 904
||| ||| || ||||||||||| ||||| |||||||||||||||| ||||||||||||||
Sbjct 28 GTTTGCCATTCGAGGAGGACCCGATCGCCATCGGGGCTTTCCATGTCATGGCCAAGGGAA 87
Query 905 TCCTCATAGTGAATTCCGCAGGAAACAGTGGTCCAGAACCTAGCACGGTCGCGAGTA-TT 963
||||||||||||||||||||||||||||||||||| |||||||||| ||| | || | ||
Sbjct 88 TCCTCATAGTGAATTCCGCAGGAAACAGTGGTCCACAACCTAGCACCGTCTCTAGCACTT 147
Query 964 GCGCCGTGGATGTTCACTGTTGCTGCTAGTAATACTAACCGTGCGTTTGTCACTAAAGTT 1023
| |||||||| |||||| | |||||||||||||| ||||| ||||||||||| ||||||
Sbjct 148 -CTCCGTGGATCTTCACTATCGCTGCTAGTAATACAAACCGGGCGTTTGTCACCAAAGTT 206
Query 1024 GTTCTCGGAAACGGCAAGACAGTTG--G-AAGATCGGTAAATTCGTTCGATCTTAACGGA 1080
||||||||| | ||||||||| ||| | |||||||||||||| ||| |||| ||||||
Sbjct 207 GTTCTCGGAGATGGCAAGACAATTGTCGGAAGATCGGTAAATT--TTC-ATCTGAACGGA 263
Query 1081 A-AGAAGTACCCTCTAGTATACGG-GAAATCAG-CTTCAAGTAGTTGTGGTGCTGCTTCC 1137
| | ||||| |||||||||||||| | | || | |||||||||| || | ||||||||||
Sbjct 264 ATA-AAGTATCCTCTAGTATACGGAGGA-TC-GTCTTCAAGTAGGTGCGATGCTGCTTCC 320
Query 1138 GCCGGGTTTTGCTCACCAGGGTGCCTAGATAGTAAACGTGTGAAAGGAAAGATTGTTTTA 1197
|||||||||||||||||||||| |||| ||||||||||| |||||||||||||| |||
Sbjct 321 ACCGGGTTTTGCTCACCAGGGTGTTTAGACAGTAAACGTGTAAAAGGAAAGATTGTGTTA 380
Query 1198 TGTGATTCCCCGCAAAATCCCGATGAAGCTCAAGCTATGGGAGCCATTGCATCTATTGTT 1257
|| |||||||||||||||||| | |||||||||| |||||||||||| ||||| ||||||
Sbjct 381 TGCGATTCCCCGCAAAATCCCAAAGAAGCTCAAGTTATGGGAGCCATCGCATCCATTGTT 440
Query 1258 AGGAGCCACCGTACAGACGTGGCAA 1282
||||||| || | ||||||||||||
Sbjct 441 AGGAGCCGCCATGCAGACGTGGCAA 465
> Ahg950603 jgi|Araly1|950603|scaffold_802490.1
Length=2223
Score = 187 bits (101), Expect = 3e-46
Identities = 283/365 (78%), Gaps = 35/365 (10%)
Strand=Plus/Plus
Query 1540 GATACAAGACGTGTAAAGTACTCCG--TTGATACCGGAACTTCAATGTCTTGTCCGCATG 1597
|||| ||||| |||||||||||| | ||| | ||||||| || ||| ||||||| || |
Sbjct 1500 GATAAAAGACATGTAAAGTACTCTGTTTTG-T-CCGGAACCTCCATGGCTTGTCCACACG 1557
Query 1598 TTGCTGGTGTAGCTGCCTAC-TTAAAATCGTTTCACCCACG-CTGGTCTCCCTCCATGAT 1655
|||| || || ||||| ||| | || | | ||||| || | ||||| || ||| ||||
Sbjct 1558 TTGCAGGCGTGGCTGCGTACATCAAGA-CTTTTCATCC-TGAATGGTCGCCTTCCGTGAT 1615
Query 1656 CCAATCAGCCATCATGACTACCGCTTGGCCAATGAATGC--AT-CTACT-TC-TC-CATT 1709
|||||| ||||||||||| |||||||||||||||||||| || ||| | || || |
Sbjct 1616 CCAATCTGCCATCATGACAACCGCTTGGCCAATGAATGCTAATAGAACTGGCTTCGCA-T 1674
Query 1710 TAA-CGA-G---TTG-----GCCGAGTTTGCTTACGGAGCTGGCCATGTCGATCCC-ATA 1758
|| ||| | ||| ||||||||||||| |||||||| |||||||| ||| |||
Sbjct 1675 CAACCGATGTCCTTGCATCAACCGAGTTTGCTTATGGAGCTGGACATGTCGA-CCCAATA 1733
Query 1759 ACTGCAATTCATCCTGGACTAGTCTATGAAGCT-AATAAATCCGACCACATCGCCTTTCT 1817
| || || |||||||||| ||||| || || | |||||||||||||||||||||||
Sbjct 1734 GCCGCTCTTAATCCTGGACTTGTCTA-CAAACTGGACAAATCCGACCACATCGCCTTTCT 1792
Query 1818 CTGCGGCTTGAACTACACTGCAAAGAAC--TTAAGACTCATCTCCGGTGATAGCAG-CAG 1874
|||||||||||| |||||| | || ||| || || |||||| ||||||| ||| | ||
Sbjct 1793 CTGCGGCTTGAATTACACTTCGAA-AACCCTTCAG-CTCATCGCCGGTGA-AGCCGTCAC 1849
Query 1875 TTGCA 1879
|||||
Sbjct 1850 TTGCA 1854
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83455726795
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5