BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G46870.1
Length=1095
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485058 jgi|Araly1|485058|fgenesh2_kg.5__1050__AT3G46870.1 1652 0.0
> Ahg485058 jgi|Araly1|485058|fgenesh2_kg.5__1050__AT3G46870.1
Length=1090
Score = 1652 bits (894), Expect = 0.0
Identities = 1035/1101 (94%), Gaps = 17/1101 (2%)
Strand=Plus/Plus
Query 1 GACGATTCAAAGTTCACGCCTTTGAGAGATGACAGCCATTCGCGTCTGCTCGCGAAAGTT 60
||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||| ||
Sbjct 1 GACGATTCAAAGTTCACACCTTTGAGAGATGACAGCAATTCGCGTCTTCTCGCGAAAATT 60
Query 61 CCCAACTTTCGCTTCGATTTTCTTCCAAAA-CATTACAAGGAATCCGTCAATTCATCGAA 119
||||||||||||||||||||||||||||| | | || || |||||| ||||||||||||
Sbjct 61 ACCAACTTTCGCTTCGATTTTCTTCCAAAATC-TCACTAGAAATCCGACAATTCATCGAA 119
Query 120 TTTCATTCTCGAATTTAAAACCCAAAACGCTACTTCACCCAATTCCGCCGAAACCCTTCA 179
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 120 TTTCATTCTCGAATCTAAAACCCAAAACGTTACTTCACCCAATTCCGCCGAAACCCTTCA 179
Query 180 CTGTCTTTGTTTCTCGGTTCCATGACGGGAGACCAAGAGGTCCTCTCTGGAGAGGTAAGA 239
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 180 CTGTCTTTGTATCTCGGTTCCATGACGGGAGACCAAGAGGTCCTCTTTGGAGAGGGAAGA 239
Query 240 AACTGATCGGAAAAGAAGCCCTTTTCGTGATTCTGGGTCTCAAGAGATTGAAAGAAGACG 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 240 AACTGATCGGAAAAGAAGCCCTTTTCGTGATTCTGGGTCTCAAGAGATTGAAAGACGACG 299
Query 300 ACGAGAAGCTGGACAAGTTTATAAAAACCCATGTTTTCAGATTGTTGAAATTAGACATGT 359
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 ACGAGAAGCTGCAGAAGTTTATAAAAACCCATGTTTTCAGATTGTTGAAATTAGACATGT 359
Query 360 TAGCTGTTATCGGTGAGCTTGAACGACAAGAAGAGACTGCGTTAGCCATCAAGATGTTTG 419
||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 360 TAGCTGTTATCGGCGGGCTTGAACGACAAGAAGAGACTGCCTTAGCCATCAAGATGTTCG 419
Query 420 AGGTGATCCAGAAACAAGAATGGTACCAACCTGATGTGTTTATGTACAAGGACCTTATAG 479
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AGGTGATCCAGAAGCAAGAATGGTACCAACCTGATGTGTTTATGTACAAGGACCTTATAG 479
Query 480 TATCCTTAGCAAAGAGTAAAAGAATGGATGAAGCAATGGCGTTGTGGGAGAAAATGAAGA 539
|||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||
Sbjct 480 TATCCTTAGCAAAGAGTAAAAGAATGGACGAAGCTATGGCTTTGTGGGAGAAAATGAAGA 539
Query 540 AAGAAAACCTCTTTCCTGATTCTCAGACTTATACTGAGGTTATCAGAGGATTTCTTCGAG 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 540 AAGAAAACCTCTTTCCTGATTCTCAGACTTATACTGAGGTTATCAGAGGATTTCTTAGAG 599
Query 600 ACGGATGTCCAGCTGATGCTATGAATGTGTATGAAGACATGTTGAAATCTCCAGATCCGC 659
|||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 600 ACGGATGTCCCGCTGATGCCATGAATGTGTATGAAGACATGTTGAAATCCCCAGATCCGC 659
Query 660 CGGAAGAGTTGCCGTTTAGGGTTTTGTTGAAGGGGCTTCTGCCGCATCCGCTTCTTAGAA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 CGGAAGAGTTGCCGTTTAGGGTTTTGTTGAAGGGGCTTCTGCCGCATCCGCTTCTTAGAA 719
Query 720 ACAAAGTGAAGAAGGATTTCGAAGAGTTGTTCCCTGAGAAACATGCTTATGATCCACCAG 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 ACAAAGTGAAGAAGGATTTCGAAGAGTTGTTCCCTGAGAAACATGCTTATGATCCACCAG 779
Query 780 AAGAGATATTTGGTAGATGCTGAGGGGAAGTCTATCTTGATCAAGATCCAGAATGTGTGA 839
||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||
Sbjct 780 AAGAGATATTTGGTAGATGTTGAGGGGAAGTCTATGTTGATCAAGATCCAGA--GTGTGA 837
Query 840 TCCTGAAGAAGTATCAGTAGATCTGAGCAAGTGGCGAAACAAAA-G--ACTT-AGTTAGT 895
| ||||| || ||||||||||||| ||||||||||||||| | |||| | |||||
Sbjct 838 TATTGAAG---TACCAGTAGATCTGAGAAAGTGGCGAAACAAATTGTTACTTCACTTAGT 894
Query 896 TAGACGAACCCAGATGATGTAGCGACTTCTATTCCTTGTTATGATGCTTCATGATATTAG 955
||||||||| | ||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 895 TAGACGAACTCGGATTATGTAGCGACTTCTATTCCTTGTTATGATGCTTCATAATATTAG 954
Query 956 GCAGAGACCGAAATTTTGTGAATGCATCATCTTTATGAAGTGACTTCTATTCCTCGTTCT 1015
||| ||||| ||| ||| ||||| ||||||||||||| |||||||||||||||| |||||
Sbjct 955 GCAAAGACC-AAACTTT-TGAATCCATCATCTTTATGTAGTGACTTCTATTCCTTGTTCT 1012
Query 1016 GATGCTTCATAATATTAGTCAAAGACCTAACTTTGTGAATCTATCATCTTT-TGAGTAAA 1074
||||||||||||||||||||||||||| |||||||| |||| ||||||||| | ||||||
Sbjct 1013 GATGCTTCATAATATTAGTCAAAGACCGAACTTTGTTAATCCATCATCTTTAT-AGTAAA 1071
Query 1075 GAAGATTCTAAGTTGACAACT 1095
| ||||||||||||||||||
Sbjct 1072 -A-GATTCTAAGTTGACAACT 1090
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40791521190
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5