BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G46890.1
Length=788
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485060 jgi|Araly1|485060|fgenesh2_kg.5__1052__AT3G46890.1 926 0.0
> Ahg485060 jgi|Araly1|485060|fgenesh2_kg.5__1052__AT3G46890.1
Length=669
Score = 926 bits (501), Expect = 0.0
Identities = 599/646 (93%), Gaps = 8/646 (1%)
Strand=Plus/Plus
Query 99 ATGGCAATCTCCAATGGCGCCGTGGAATTTCTCCGGCGACGACTCCTCCCAACTACACTA 158
||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||
Sbjct 1 ATGGCAATCTCCAATGGCGCCGTGGAATTTCTCCGGCGACGGCTCCTCCCAACAACGTTA 60
Query 159 ATCCACGTCACGGCTATAGACGGCATCGTGAACGTTAATTCACTCTTCTCGCTTGCTCTT 218
||||||||||||||| |||| || |||||||| |||||||||||||||||||||||||||
Sbjct 61 ATCCACGTCACGGCTCTAGATGGGATCGTGAATGTTAATTCACTCTTCTCGCTTGCTCTT 120
Query 219 TTCCTCGGCCTAACCACAAGTGGAAACATCACTTTCCCGGTTTCCTCATCAGCCTCCGAG 278
|||||||| || |||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 121 TTCCTCGGTCTCACCACAAGTGGAAACATCACTTTCCCGGTTTCCTCATCCGCCGCCGAG 180
Query 279 AACCACCATCTCCGCCGATGTATCTCTGCAAAAGGTCCCGCATTAGCGGAGAGGCTAGTA 338
||||||||||||| |||||||||| | ||||||||||||||||||||||||||||| ||
Sbjct 181 AACCACCATCTCCACCGATGTATCGCCGCAAAAGGTCCCGCATTAGCGGAGAGGCTTGTC 240
Query 339 TCAAGCCATGTTTACTCCTTCAGTTTATTCCTCTTCTCCAGTCTCATCGCTATGTCTCTC 398
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 241 TCAAGCCATGTTTACTCCTTCAGCTTATTCCTCTTCTCCAGCCTCATCGCTATGTCTCTC 300
Query 399 AAGCAAGCAATTAGGacaacaacaacaacaacaaacGGGAACTGTT-TAGAGGAGGAGGC 457
||||||||||| ||| |||||||||||||||||||||||| ||| | | |||||||||
Sbjct 301 AAGCAAGCAATCAGG---ACAACAACAACAACAAACGGGAAC-GTTGTGGTGGAGGAGGC 356
Query 458 GCGTGTGTTGAACGCGGGAGAGGGGCGTGTGAACTTGGCAGCTTTAAGGGTTGGGATTGT 517
|||||||||||| ||||||||||| || ||||||||||||||||| ||||||||||| ||
Sbjct 357 GCGTGTGTTGAAAGCGGGAGAGGGACGCGTGAACTTGGCAGCTTTGAGGGTTGGGATCGT 416
Query 518 TGCTTCGTGTGTTGCGTCGGTTTTGGGATGTGGGTTCTTGACAATGGCGTTAGTGGATCT 577
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 GGCCTCGTGTGTTGCGTCGGTTTTGGGATGTGGGTTCTTGACAATGGCGTTAGTGGATCT 476
Query 578 TGTTCAGATTAAACTTGGACCTTTGGAATGTAAGAGAAGCTTTCATGCACTTGCAGCTAT 637
|||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 477 TGTTCAGATTAAGCTTGGTCCTTTGGAATGTAAGAGAAGCTTTCATGCACTTGCGGCTAT 536
Query 638 TGTTCCTCTTGTTGTACTTGTTCCTTCTGCACTTATTATCTATGTGTTCCTTGTGCTCTA 697
| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 537 TATTCCTCTTGTTGTGCTTGTTCCTTCTGCACTTGTTATCTATGTGTTCCTTGTGCTTTA 596
Query 698 CGCATTTATCTATTAAC-CCTTTTTTGGGTTTCTACAATCTCTTGT 742
|||||| || |||| || |||||| ||||||||||||||||||||
Sbjct 597 CGCATTCATTTATTGACACCTTTT--GGGTTTCTACAATCTCTTGT 640
Score = 58.4 bits (31), Expect = 8e-08
Identities = 31/31 (100%), Gaps = 0/31 (0%)
Strand=Plus/Plus
Query 757 GTTTCAGATTCGATTAGTTCTGTAGCCAGAG 787
|||||||||||||||||||||||||||||||
Sbjct 639 GTTTCAGATTCGATTAGTTCTGTAGCCAGAG 669
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29087785671
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5