BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G46910.1
Length=744
Score E
Sequences producing significant alignments: (Bits) Value
Ahg897522 jgi|Araly1|897522|Al_scaffold_0005_1488 556 6e-158
Ahg897538 jgi|Araly1|897538|Al_scaffold_0005_1504 540 6e-153
> Ahg897522 jgi|Araly1|897522|Al_scaffold_0005_1488
Length=879
Score = 556 bits (301), Expect = 6e-158
Identities = 471/550 (86%), Gaps = 23/550 (4%)
Strand=Plus/Plus
Query 1 ATGAAGACTACTCCTGGTTTGAGGATTTTCAAGCCCATCATCCCTCACACACCTAAACCG 60
||||||||||||||||||||| || |||||||||||||||||||| | | ||||||| ||
Sbjct 70 ATGAAGACTACTCCTGGTTTGCGGGTTTTCAAGCCCATCATCCCTGATATACCTAAA-CG 128
Query 61 -GACTCTAGAATTTATGTGGAAGATGCTTGGACAATGCTAAAGCCAGCCATAAGAGCCAT 119
||| ||| ||||||| |||| ||||||||||||| |||||||||||| |||||| ||||
Sbjct 129 AGACCCTAAAATTTATTTGGATGATGCTTGGACAAAGCTAAAGCCAGCTATAAGAACCAT 188
Query 120 CTTCCTCGACGAGCCACAAGATTTTGCA-TGCAGTGGGCTTTTCAATGCTGTTAATAAAT 178
||||||||| ||||||||||||| | || ||| || | ||||||| |||||| |||||
Sbjct 189 CTTCCTCGATGAGCCACAAGATTAT-CACTGCTCTGAGATTTTCAACGCTGTTCATAAAG 247
Query 179 CATGGT-GTGAAAAGTCTTCAGGAGAAGCCCTTTACAAGCTGATCTTGGAGGAGTGTGAG 237
|||||| || |||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 248 CATGGTGGT-CAAAGTCATCAGGAGAAACCCTTTACAAGCTGATCTTGGAGGAGTGTGAG 306
Query 238 ATATACATCTCTGCAGCCATACAGTCTTTAGAATCGCAATGCGAT-ACGGATCCCTCTCT 296
||||||||||||||||| ||||||| ||| |||||||| |||||| | | |||||||| |
Sbjct 307 ATATACATCTCTGCAGCTATACAGTATTTCGAATCGCATTGCGATGATG-ATCCCTCTGT 365
Query 297 TTTCCT-CTCACTCTTGGAGAAGTGTTGGCTAGACTTTCGCCGCAAGTTACAGTTTCTCT 355
|||||| | ||||| ||||||| ||||| || || |||||||||||||| ||| |||||
Sbjct 366 TTTCCTGC-CACTCATGGAGAATTGTTGCCTGGAGTTTCGCCGCAAGTTGCAGGATCTCT 424
Query 356 GTAGCATTGCCGGTGGTGAAGGTCAGACCGTCGGTCC-ACACTCAGTGTGGGACTTGGGT 414
|||||||||| | | ||||||||| || || |||| | | ||| ||||||||||||||
Sbjct 425 GTAGCATTGC-G-TA-TGAAGGTCATACAGTTGGTCTGAAA-TCATTGTGGGACTTGGGT 480
Query 415 AGTGAGCTTTCTCCC-AAGCATCTCTTCTCAGCC-CAGAAAGTTCGTGACAAGCTTCTTT 472
| |||||||| |||| |||||||||| || |||| | ||||||||||||||||||||||
Sbjct 481 ATTGAGCTTT-TCCCCAAGCATCTCTGCTTAGCCTCT-AAAGTTCGTGACAAGCTTCTTT 538
Query 473 CCATCATTCT-ACAAC-TCATTAGAGATCAAAGATCATTCATGTCTGTTGACATGACTCA 530
|||||| || | ||| |||||||||||||||||| | || | ||||||||| ||||||
Sbjct 539 CCATCAA-CTTA-AACCTCATTAGAGATCAAAGATTAGGCAAGGCTGTTGACACGACTCA 596
Query 531 GCTAAAGAAT 540
||||||||||
Sbjct 597 GCTAAAGAAT 606
Score = 171 bits (92), Expect = 9e-42
Identities = 149/176 (85%), Gaps = 6/176 (3%)
Strand=Plus/Plus
Query 560 CTGTTCACATGACTCAGCTAAACAATCTTAGGGGTTTGTTTTAT-GGACAGT-CTCTCTA 617
||||| ||| |||||||||||| |||||| ||| |||||| || || || | | ||||
Sbjct 581 CTGTTGACACGACTCAGCTAAAGAATCTTTGGGTTTTGTTGCATGGGCCA-TGGT-TCTA 638
Query 618 CAAGTCGCCCTTCTTCAAGAAACCCTTTATCGACTGCGCTGTTGAGTTTTACTCAGCAGA 677
||||||| ||||||| |||| || ||||| |||||||||||||||||||||||||||||
Sbjct 639 CAAGTCGGGCTTCTTCGAGAAGCCTTTTATGGACTGCGCTGTTGAGTTTTACTCAGCAGA 698
Query 678 AGCAATGCAGTTCAAGGAGCAGTCAGACATTCCAC-TGTATTTGAAACGTGTCGAG 732
| || ||||||||||||||||||| |||||||| | | |||||||| | |||||||
Sbjct 699 ATCACTGCAGTTCAAGGAGCAGTCCGACATTCCCCAT-TATTTGAAGCATGTCGAG 753
> Ahg897538 jgi|Araly1|897538|Al_scaffold_0005_1504
Length=1374
Score = 540 bits (292), Expect = 6e-153
Identities = 465/547 (85%), Gaps = 17/547 (3%)
Strand=Plus/Plus
Query 1 ATGAAGACTACTCCTGGTTTGAGGATTTTCAAGCCCATCATCCCTCACACACCTAAACCG 60
||||||| ||||||||||||| || |||||||||||||||||||| | | |||||||||
Sbjct 226 ATGAAGAGTACTCCTGGTTTGCGGGTTTTCAAGCCCATCATCCCTGATATACCTAAACCA 285
Query 61 GACTCTAGAATTTATGTGGAAGATGCTTGGACAATGCTAAAGCCAGCCATAAGAGCCATC 120
||| ||| ||| ||| |||| ||||||||||||| |||||| ||||| |||||| |||||
Sbjct 286 GACCCTAAAATCTATTTGGATGATGCTTGGACAAAGCTAAAACCAGCTATAAGAACCATC 345
Query 121 TTCCTCGACGAGCCACAAGATTTTGCA-TGCAGTGGGCTTTTCAATGCTGTTAATAAATC 179
|||||||| ||| ||||||||||| || ||| || | ||||||| |||||| |||| |
Sbjct 346 TTCCTCGATGAGGCACAAGATTTT-CACTGCTCTGAGATTTTCAACGCTGTTCGTAAAGC 404
Query 180 ATGGT-GTGAAAAGTCTTCAGGAGAAGCCCTTTACAAGCTGATCTTGGAGGAGTGTGAGA 238
||||| || |||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 405 ATGGTGGT-CAAAGTCATCAGGAGAAACCCTTTACAAGCTGATCTTGGAGGAGTGTGAGA 463
Query 239 TATACATCTCTGCAGCCATACAGTCTTTAGAATCGCAATGCGAT-ACGGATCCCTCTCTT 297
|||||||||||||||| |||||||||||||||||||| |||||| | | |||||||| ||
Sbjct 464 TATACATCTCTGCAGCTATACAGTCTTTAGAATCGCATTGCGATGATG-ATCCCTCTGTT 522
Query 298 TTCCT-CTCACTCTTGGAGAAGTGTTGGCTAGACTTTCGCCGCAAGTTACAGTTTCTCTG 356
||||| | ||| | | ||||| ||||| ||||| |||||||||||||| ||| ||||||
Sbjct 523 TTCCTGC-CACGCATAGAGAATTGTTGCCTAGAGTTTCGCCGCAAGTTGCAGGATCTCTG 581
Query 357 TAGCATTGCCGGTGGTGAAGGTCAGACCGTCGGTCCACACTCAGTGTGGGACTTGGGTAG 416
||||||||| | | ||||||||| || || |||| | | ||| ||| |||||||||||
Sbjct 582 TAGCATTGC-G-TA-TGAAGGTCATACAGTTGGTCTAAAATCATTGTCGGACTTGGGTAT 638
Query 417 TGAGCTTTCTCCC-AAGCATCTCTTCTCAGCC-CAGAAAGTTCGTGACAAGCTTCTTTCC 474
|||||||| |||| |||||||||| || |||| | ||||||||||||||||||||||||
Sbjct 639 TGAGCTTT-TCCCCAAGCATCTCTGCTTAGCCTCT-AAAGTTCGTGACAAGCTTCTTTCC 696
Query 475 ATCATTCT-ACAACTCATTAGAGATCAAAGATCATTCATGTCTGTTGACATGACTCAGCT 533
|||| || | | ||||| ||||||||||||| | || | ||||||||| |||||||||
Sbjct 697 ATCAA-CTTAGACCTCATAAGAGATCAAAGATTAGGCAAGGCTGTTGACACGACTCAGCT 755
Query 534 AAAGAAT 540
|||||||
Sbjct 756 AAAGAAT 762
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27410377323
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5