BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G46930.1
Length=1844
Score E
Sequences producing significant alignments: (Bits) Value
Ahg347795 jgi|Araly1|347795|fgenesh1_pg.C_scaffold_5001187 1838 0.0
Ahg496018 jgi|Araly1|496018|fgenesh2_kg.8__1834__AT5G58950.1 612 3e-174
Ahg479989 jgi|Araly1|479989|fgenesh2_kg.3__2690__AT5G58950.1 555 5e-157
Ahg951757 jgi|Araly1|951757|scaffold_13900005.1 464 9e-130
> Ahg347795 jgi|Araly1|347795|fgenesh1_pg.C_scaffold_5001187
Length=1551
Score = 1838 bits (995), Expect = 0.0
Identities = 1229/1339 (92%), Gaps = 28/1339 (2%)
Strand=Plus/Plus
Query 529 AGATGCAGAGGAATCCAGTTACTAATAAGAAGAGATCTGTTTCTCCGTTGCCTCATATGG 588
|||| ||||| |||||||| | ||||||| |||| ||||| ||||||| |||||||||||
Sbjct 218 AGATACAGAGAAATCCAGTCAGTAATAAGGAGAGGTCTGTCTCTCCGTCGCCTCATATGG 277
Query 589 CTCTTTCTGATGCTTTTATCGAAGCAAAGTCTGATATTAAGAGGTTTTCTACTCCACATC 648
|||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 278 CTCTTTCTGATGCTTTTAAGGAAGCAAAATCTGATATTAAGAGGTTTTCTACTCCACATC 337
Query 649 CTAGAAGAGTGGAACCAGAGAAGGGAATGAAGGCCAAGTCGTCGTCCCGCAAAGATTCTT 708
|||||||| |||||||||| |||||||||||||| |||| | | ||||||||| ||||
Sbjct 338 CTAGAAGAATGGAACCAGACAAGGGAATGAAGGCAAAGT--T-GCCCCGCAAAGGTTCTC 394
Query 709 CTGAGAAAAAATCAG-TTAATCTACGGTCCCTGTCTCACTCGGGTCCTATTAGGGATCTT 767
||||||||||||| | ||| |||||||||||| || |||||||||||||||||||||| |
Sbjct 395 CTGAGAAAAAATC-GTTTAGTCTACGGTCCCTATCACACTCGGGTCCTATTAGGGATCAT 453
Query 768 AGTACGCAGAAAGTTAAAGAGAGGGGAAAGAGCAAGATAGATAAGAAGTCTTCAAAGTCT 827
|||| | |||| | ||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 454 AGTATGGTGAAAACTCAAGAGAGGGAAAAGAGCAAGATAGATAAGAGGTCTTCAAAGTCT 513
Query 828 GTTGACTATAGAGGTTCTAAAGTAAGTTCTGCAGGAGTGCTTGAAGAATGCCTCATTGAT 887
|||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||
Sbjct 514 GTTGACTATAGAGGTTCTAAAGTATGTTCTGCAGGAGTGCTTGAAGAGTACCTCATTGAT 573
Query 888 GTGTCTAAGTTGTCTTATGGGGATAGGTTTGCTCACGGGAAATATAGCCAGATTTATCAT 947
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 574 GTGTCTAAGTTGTCTTATGGGGATAGGTTTGCGCATGGGAAATATAGCCAGATTTATCAT 633
Query 948 GGTGAATATGAAGGCAAAGCTGTTGCTCTGAAGATTATCACAGCGCCTGAGGATAGTGAC 1007
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 634 GGAGAATACGAAGGCAAAGCTGTTGCTCTGAAGATTATCACAGCGCCTGAGGATAGTGAC 693
Query 1008 GACATATTCTTGGGA-GCTCGTTTAGAAAAAGAGTTTATCGTGGAAGCCACTCTTTTATC 1066
|||| |||||| ||| ||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 694 GACAGATTCTT-GGATGCTTGTTTAGAAAAAGAGTTTATCAAGGAAGCCACTCTTTTATC 752
Query 1067 TCGACTAAGCCATCCAAATGTCGTTAAGTTTGTTGGAGTGAATACTGGAAACTGTATCAT 1126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 753 TCGACTAAGCCATCCAAATGTCGTTAAGTTTGTTGGAGTGAATACTGGAAACTGTATCAT 812
Query 1127 CACAGAGTATGTACCTCGAGGGTCTTTAAGATCATATCTGCACAAGCTCGAGCAGAAATC 1186
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 813 CACGGAGTATGTGCCTCGAGGGTCTTTAAGATCATATCTGCACAAGCTCGAGCAGAAATC 872
Query 1187 CCTTCCTTTGGAACAGCTAATCGATTTTGGTCTGGATATTGCTAAAGGAATGGAATATAT 1246
||||||| || ||||||||||||| ||||| ||||||||||||| |||||||||||||||
Sbjct 873 CCTTCCTATGCAACAGCTAATCGAGTTTGGGCTGGATATTGCTAGAGGAATGGAATATAT 932
Query 1247 TCACTCAAGAGAGATAGTTCATCAGGATCTGAAGCCAGAAAACGTGTTGATCGACAATGA 1306
||||||||||||||||||||||| |||| | ||||||||||| || ||||||||||| ||
Sbjct 933 TCACTCAAGAGAGATAGTTCATCGGGATGTTAAGCCAGAAAATGTTTTGATCGACAAAGA 992
Query 1307 CTTTCACTTGAAGATTGCTGACTTTGGCATAGCGTGCGAGGAGGAGTACTGTGATGTTTT 1366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 993 CTTTCACTTGAAGATTGCTGACTTTGGCATAGCGTGCGAGGAGGAGTACTGTGATGTTTT 1052
Query 1367 GGGGGATAACATAGGAACTTATAGGTGGATGGCACCTGAAGTTTTAAAACGGATACCACA 1426
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1053 GGGGGATAACACAGGAACCTATAGGTGGATGGCACCTGAAGTTTTAAAACGGATACCACA 1112
Query 1427 TGGACGGAAGTGCGATGTTTATAGTTTTGGACTTCTTTTATGGGAAATGGTAGCTGGAGC 1486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1113 TGGACGGAAGTGCGATGTTTATAGTTTTGGACTTCTTTTATGGGAAATGGTAGCTGGAGC 1172
Query 1487 ACTTCCATATGAGGAGATGAAATTTGCTGAACAAATTGCCTACGCAGTTATATACAAGAA 1546
| |||||||||||||||||||||| |||| ||| ||||||||||||| ||| |||||||
Sbjct 1173 AGTTCCATATGAGGAGATGAAATTGGCTGCCCAAGTTGCCTACGCAGTCATAAACAAGAA 1232
Query 1547 AATTAGGCCAGTTATACCGACGGATTGTCCAGCGGCCATGAAAGAGCTGATCGAGCGATG 1606
|||||||| |||||||||| |||||||||||||||||||||||||||||| |||| |||
Sbjct 1233 CATTAGGCCGGTTATACCGAAGGATTGTCCAGCGGCCATGAAAGAGCTGATGGAGCTATG 1292
Query 1607 TTGGTCATCGCAAACAGACAAGAGACCGGAATTCTGGCAGATTGTCAAAGTGTTGGAACA 1666
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1293 TTGGTCATCGCAGACAGACAAGAGACCAGAATTCTGGCAGATTGTCAAAGTGTTGGAACA 1352
Query 1667 TTTCAAGAAGTCTCTAACAAGCGAAGGAAAACTTAATCTTTTACCTAGCCAGATCTGTCC 1726
||| ||||||||||| |||| |||||||| ||| ||||||||||||||||||||||||||
Sbjct 1353 TTTTAAGAAGTCTCTGACAAACGAAGGAAGACTGAATCTTTTACCTAGCCAGATCTGTCC 1412
Query 1727 AGAACTAAAGAAATGTCCTAAATTCTGGATTCATATATTCGGATCATTCCACCACCACAG 1786
||||||||||||| ||| |||||| |||||||| | | |||| ||||||||||||||||
Sbjct 1413 AGAACTAAAGAAAGGTCATAAATTATGGATTCAGAAAATCGGCTCATTCCACCACCACAA 1472
Query 1787 C-A--------------GCGGTGGCGGCAGCAGCAGCAACA--A----CTCAGCCTTACC 1825
| | |||||||||||||||||||||||| | ||||||||||||
Sbjct 1473 CCACCACCACCACCACAGCGGTGGCGGCAGCAGCAGCAACACCATAGGCTCAGCCTTACC 1532
Query 1826 TAAGCCTAAATTCGCTTGA 1844
|||||||||||||||||||
Sbjct 1533 TAAGCCTAAATTCGCTTGA 1551
Score = 143 bits (77), Expect = 5e-33
Identities = 83/86 (97%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 417 ATGGATGGAGAGGTTACTTCTTGGATTAGGAGAGCAAATTTCTCTCATACTGTTTGTTAT 476
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGGATGGAGAGGTTACTTCTTGGATTAGGAGGGCAAATTTCTCTCATACTGTTTGTTAT 60
Query 477 CGTATGATTACGCCGAGTTTAGAATC 502
||||||||||| ||||| ||||||||
Sbjct 61 CGTATGATTACACCGAGCTTAGAATC 86
> Ahg496018 jgi|Araly1|496018|fgenesh2_kg.8__1834__AT5G58950.1
Length=2273
Score = 612 bits (331), Expect = 3e-174
Identities = 919/1189 (77%), Gaps = 95/1189 (8%)
Strand=Plus/Plus
Query 527 GAAGATGCAGAGGAATCCAGTTACTAATAAGA-AGAGATCTGTTTCTCCGTT-GCCTCAT 584
||| || |||| || || || |||||||| | | |||||||||||||| || ||||||
Sbjct 752 GAA-ATACAGACAAACCCTGTAACTAATAA-ACATAGATCTGTTTCTCC-TTCGCCTCAG 808
Query 585 ATGGCTCTTTCTGATGCT-TTTATCGAAGCAAAG-TCTGATATTAAGAGGTTTTCTACTC 642
|||||| || |||||| | |||| ||||| ||| ||||| |||||| |||||||| |
Sbjct 809 ATGGCTGTTCCTGATG-TGTTTAAGGAAGC-AAGATCTGAGCGTAAGAGATTTTCTACGC 866
Query 643 CACATCCTAGAAGAGTGGAACCAGAGAAGGGAATGAAGGCC-AAGTCGTCGTCCCGCAAA 701
||||||| |||||||||||| | || ||||||||||| ||| |||| | || | |||
Sbjct 867 CACATCCAAGAAGAGTGGAATCGGAAAAGGGAATGAA-GCCTAAGT--T-ATCTCATAAA 922
Query 702 GA-TTCTTCTGAGAAA-AAATCAGTTAATCTACGGTCCCTGTCTCACTCGGGTCCTATTA 759
| | ||| ||| ||| | |||| ||||| | |||| | || || || |||||||| |
Sbjct 923 AACTCCTT-TGA-AAAGAGATCATTTAATTTGCGGT--C--TC-CA-TCCGGTCCTATCA 974
Query 760 GGGATCTTAGTACGCAGA-AAGTTAAAGAGAGGG-GAAAGAGCAAGATA-GATA-AGAAG 815
| |||||| | || | || || || ||||||||| | |||||||||| | || | || |
Sbjct 975 GAGATCTTGGCACTCTGAGAA-TTCAAGAGAGGGTG-AAGAGCAAGA-AGGACACAGGA- 1030
Query 816 TCTTCAAAGTC-TGTTGACT-ATAGAGGTTC-TAAAGTAAGTTCTGCAGGAG-TGCTTGA 871
| || ||| | | |||| | ||| || || || ||| ||| ||| || || | | |||
Sbjct 1031 TGGTCTAAG-CTTTTTGA-TAATACTGG-TCGTAGAGTGAGTGCTGTAGAAGCTTC-TGA 1086
Query 872 AGAATGCC-TCATTGATGTGTCTAAGTTG-TCTTATGGGGATAGGTTTGCTCACGGGAAA 929
||| | || | ||||| |||| |||||| |||| |||| || ||||||||| ||| |
Sbjct 1087 AGAGTTCCGT-GTTGATATGTCAAAGTTGTTCTT-TGGGCTTAAGTTTGCTCATGGGTTA 1144
Query 930 TATAGCCAGATTTATCATGGTGAA-TATGAAGGCAAAGCTGTTGCTC-TGAAGATTATCA 987
|| |||| | | || |||||| || ||||||| ||||||||||| | ||||| ||||||
Sbjct 1145 TACAGCCGGCTATACCATGGT-AAGTATGAAGATAAAGCTGTTGC-CGTGAAGCTTATCA 1202
Query 988 CAGCGCCTGAGGATAGTGACGA-CAT--ATTCTTGGGAGCTCGTTTAGAAAAAGAGTTTA 1044
| | ||||| | | |||||| || || |||||||||||||||||| ||| ||||||
Sbjct 1203 CTGTACCTGATG--A-TGACGATAATGGATGCTTGGGAGCTCGTTTAGAGAAACAGTTTA 1259
Query 1045 TCGTGGAAGCCACTCTTTTATCTCGACTAAGC-CATCCAAATGTCGTTAAGTTTGTTGGA 1103
| ||||| ||| ||||| |||||| | | | ||||| ||||| | |||||||| |||
Sbjct 1260 CCAAGGAAGTCACCCTTTTGTCTCGATTGA-CTCATCCGAATGTTATAAAGTTTGTGGGA 1318
Query 1104 --G--T-GA-AT---ACTGGAAACTGTATCATCACAG-AGTATGTACCTCG-AGGGTCTT 1152
| | | || ||| | | ||| || |||| | ||||| ||||| | ||| ||||
Sbjct 1319 GCGTATAAAGATCCGCCTGTATATTGTGTCCTCAC-GCAGTATTTACCT-GAAGGATCTT 1376
Query 1153 TAAGATCATATCTGCACAAG-CTCGAGCAGAAATCCCTTCCTTTGGAACAGCTAATCGAT 1211
||||||| | |||||||||| || ||| | | || ||||||||| || |||| || ||
Sbjct 1377 TAAGATCTTTTCTGCACAAGCCT-GAGAATAGGTCTCTTCCTTTGAAAAAGCTTATAGAG 1435
Query 1212 TTTGGTCTGGATATTGCTAA-AGGAATGGAATATATTCACTCAAGAGAGATAGTTCATCA 1270
|||| ||| |||||||| || |||||||||||||||||||||| || | ||| ||||||
Sbjct 1436 TTTGCTCTAGATATTGC-AAGAGGAATGGAATATATTCACTCACGACACATAATTCATCG 1494
Query 1271 GGATCTGAAGCCAGAAAACGTGTTGATCGAC-AATGACTTTCACTTGAAGATTGCTGACT 1329
|||||| ||||||||||| || ||||||||| || ||||| || ||||||||||||||||
Sbjct 1495 GGATCTTAAGCCAGAAAATGTATTGATCGACGAA-GACTTCCATTTGAAGATTGCTGACT 1553
Query 1330 TTGGCATAGCGTGCGAGGAGGAGTACTGTGATGTTTTGGGGGATAACA-TAGGAACTTAT 1388
||||||||||||||||||||||||||||||| | |||| ||| || | ||||| |||
Sbjct 1554 TTGGCATAGCGTGCGAGGAGGAGTACTGTGACATGTTGGCTGATGACCCT-GGAACATAT 1612
Query 1389 AGGTGGATGGCACCTGAAGTTTTAAAACGGATACCACATGGACGGAAGTGC-GATGTTTA 1447
|||||||||||||||||| | ||||||||| |||||| || || ||| || ||||||||
Sbjct 1613 AGGTGGATGGCACCTGAAATGATAAAACGGAAACCACACGGGCGTAAG-GCCGATGTTTA 1671
Query 1448 TAGTTTTGGACTTC-TTTTATGGGAAATGGTAGCTGGAGCACTTCCATATGAGGAGATGA 1506
|| |||||||| | |||||||||||||||||||||||||| | || |||||||| ||||
Sbjct 1672 CAGCTTTGGACT-CGTTTTATGGGAAATGGTAGCTGGAGCAATCCCGTATGAGGACATGA 1730
Query 1507 AATTTGCTGAA-CAAATTGCCTACGCAGTTATATACAAGAAAATTAGGCCAGTTATACCG 1565
| | || | ||| ||| | ||||| || ||||||| |||||||||| ||| |||
Sbjct 1731 A-TC--CT-ATTCAAGCTGCTTTTGCAGTCGTACACAAGAACATTAGGCCAGCTATCCCG 1786
Query 1566 ACG-GATTGTCCAGCGGCCATGAAAGAGCTGATCGAGC-GATGTTGGTCA-TCGCAAACA 1622
| |||||||||| |||||||||| ||||| |||| | |||||||| | ||| |
Sbjct 1787 G-GAGATTGTCCAGTAGCCATGAAAGCTCTGATAGAGCAG-TGTTGGTCGGTTGCAC-CG 1843
Query 1623 GACAAGAGACCGGAATTCTGGCAGATTGTCAAAGTG-TTGGAACA-TTT 1669
|| |||||||| || ||||||||||| || |||||| ||| |||| |||
Sbjct 1844 GATAAGAGACCAGAGTTCTGGCAGATAGTGAAAGTGCTTG-AACAGTTT 1891
> Ahg479989 jgi|Araly1|479989|fgenesh2_kg.3__2690__AT5G58950.1
Length=2244
Score = 555 bits (300), Expect = 5e-157
Identities = 900/1177 (76%), Gaps = 92/1177 (8%)
Strand=Plus/Plus
Query 527 GAAGATGCAGAGGAATCCAGTTACTAATAAGAAGAGATCTGTTTCTCCGTTGCCTCATAT 586
||| || |||| || || || ||||||||| |||||||||||||||| | |||||| ||
Sbjct 752 GAA-ATACAGACAAACCCTGTAACTAATAAGCAGAGATCTGTTTCTCCCTCGCCTCAAAT 810
Query 587 GGCTCTTTCTGATGCT-TTTATCGAAGCAAAGTCTGATATTAAGAGGTTTTCTACTCCAC 645
|||| || |||||| | |||| ||||||| ||| || |||||| |||||||||||||
Sbjct 811 GGCTGTTCCTGATG-TGTTTAAGGAAGCAAGGTCGGAGCGTAAGAGATTTTCTACTCCAC 869
Query 646 ATCCTAGAAGAGTGGAACCAGAGAAGGGAATGAAGGCC-AAGTCGTCGTCCCGCAAAGA- 703
|||| ||| | |||||| | || ||||||||||| ||| |||| | || | ||| |
Sbjct 870 ATCCGAGACGGGTGGAATCGGAAAAGGGAATGAA-GCCTAAGT--T-ATCTCATAAAAAC 925
Query 704 TTCTTCTGAGAAA-AAATCAGTTAATCTACGGTCCCTGTCTCACTCGGGTCCTATTAGGG 762
| ||| ||| ||| | |||| ||||| | |||| | || || || |||||||| || |
Sbjct 926 TCCTT-TGA-AAAGAGATCATTTAATTTGCGGT--C--TC-CA-TCAGGTCCTATCAGAG 977
Query 763 ATCTTAGTACGCAGA-AAGTTAAAGAGAGGG-GAAAGAGCAAGATA-GATA-AGAAGTCT 818
||||| | || | || || || ||||||||| | |||||||||| | || | || | |
Sbjct 978 ATCTTGGCACTCTGAGAA-TTCAAGAGAGGGTG-AAGAGCAAGA-AGGACACAGGA-TGG 1033
Query 819 TCAAAGTC-TGTTGACT-ATAGAGGTTC-TAAAGTAAGTTCTGCAGGAG-TGCTTGAAGA 874
|| ||| | | |||| | ||| || || || ||| ||| ||| || || | | ||||||
Sbjct 1034 TCTAAG-CTTTTTGA-TAATACTGG-TCGTAGAGTGAGTGCTGTAGAAGCTTC-TGAAGA 1089
Query 875 ATGCC-TCATTGATGTGTCTAAGTTG-TCTTATGGGGATAGGTTTGCTCACGGGAAATAT 932
| || | ||||| |||| |||||| |||| |||| || ||||||||| ||| ||||
Sbjct 1090 GTTCCGT-GTTGATATGTCAAAGTTGTTCTT-TGGGCTTAAGTTTGCTCATGGGTTATAT 1147
Query 933 AGCCAGATTTATCATGGTGAA-TATGAAGGCAAAGCTGTTGCTC-TGAAGATTATCACAG 990
|||| | | || |||||| || ||||||| ||||||||||| | ||||| ||||||| |
Sbjct 1148 AGCCGGCTATACCATGGT-AAGTATGAAGATAAAGCTGTTGC-CGTGAAGCTTATCACTG 1205
Query 991 CGCCTGAGGATAGTGACGA-CAT--ATTCTTGGGAGCTCGTTTAGAAAAAGAGTTTATCG 1047
||||| | | |||||| || || |||||||||||||||||| ||| |||||| |
Sbjct 1206 TACCTGATG--A-TGACGATAATGGATGCTTGGGAGCTCGTTTAGAGAAACAGTTTACCA 1262
Query 1048 TGGAAGCCACTCTTTTATCTCGACTAAGCCATCCAAATGTCGTTAAGTTTGTTGGAGTGA 1107
||||| ||| ||||| |||||| | | |||||||||||| | ||| | | || |
Sbjct 1263 AGGAAGTCACCCTTTTGTCTCGATTGACCCATCCAAATGTTATAAAG---G-T-GA-T-- 1314
Query 1108 ATACTGGAAACTGTATC-ATCACAGAG-TATGTACCTCG-AGGGTCTTTAAGATCATATC 1164
| || || | || | ||| | | ||||| | ||| || |||||||| | ||
Sbjct 1315 -TTCT----TCTCTCTCTTTGTGGGAGCT-TTTACCT-GAAGGATCGTTAAGATCTTTTC 1367
Query 1165 TGCACAAG-CTCGAGCAGAAATCCCTTCCTTTGGAACAGCTAATCGATTTTGGTCTGGAT 1223
|||||||| || ||| | | || ||||||||| || |||| || || |||| ||| |||
Sbjct 1368 TGCACAAGCCT-GAGAATAGGTCTCTTCCTTTGAAAAAGCTTATAGAGTTTGCTCTAGAT 1426
Query 1224 ATTGCTAA-AGGAATGGAATATATTCACTCAAGAGAG-ATAGTTCATCAGGATCTGAAGC 1281
||||| || |||||||||||||||||||||| || | ||| |||||| |||||| ||||
Sbjct 1427 ATTGC-AAGAGGAATGGAATATATTCACTCACGA-CGCATAATTCATCGGGATCTTAAGC 1484
Query 1282 CAGAAAACGTGTTGATCGAC-AATGACTTTCACTTGAAGATTGCTGACTTTGGCATAGCG 1340
| ||||| || ||||||||| || ||||| || |||||||| ||||||||||||||||||
Sbjct 1485 CGGAAAATGTATTGATCGACGAA-GACTTCCATTTGAAGATCGCTGACTTTGGCATAGCG 1543
Query 1341 TGCGAGGAGGAGTACTGTGATGTTTTGGGGGATAACATAGGAACTTATAGGTGGATGGCA 1400
|||||||||||||||||||| | |||| ||| || ||||| ||| |||||||||||
Sbjct 1544 TGCGAGGAGGAGTACTGTGACATGTTGGCTGATGACCCCGGAACATATCGGTGGATGGCA 1603
Query 1401 CCTGAAGTTTTAAAACGGATACCACATGGACGGAAGTGC-GATGTTTATAGTTTTGGACT 1459
|||||| | ||||||||| |||||| || || ||| || |||||||| || ||||||||
Sbjct 1604 CCTGAAATGATAAAACGGAAACCACACGGGCGTAAG-GCCGATGTTTACAGCTTTGGACT 1662
Query 1460 TC-TTTTATGGGAAATGGTAGCTGGAGCACTTCCATATGAGGAGATGAAATTTGCTGAA- 1517
| |||||||||||||||||||||| ||| | || |||||||| ||||| | || |
Sbjct 1663 -CGTTTTATGGGAAATGGTAGCTGGGGCAATCCCGTATGAGGACATGAA-TC--CT-ATT 1717
Query 1518 CAAATTGCCTACGCAGTTATATACAAGAAAATTAGGCCAGTTATACCGACG-GATTGTCC 1576
||| ||| | |||||| || ||||||| |||||||||| ||| ||| | ||||||||
Sbjct 1718 CAAGCTGCTTTCGCAGTCGTACACAAGAACATTAGGCCAGCTATTCCGG-GAGATTGTCC 1776
Query 1577 AGCGGCCATGAAAGAGCTGATCGAGC-GATGTTGGTCA-TCGCAAACAGACAAGAGACCG 1634
|| |||||||||| ||||| |||| | |||||||| | ||| | || ||||||||
Sbjct 1777 AGTAGCCATGAAAGCTCTGATAGAGCAG-TGTTGGTCGGTTGCAC-CGGATAAGAGACCA 1834
Query 1635 GAATTCTGGCAGATTGTCAAAGTG-TTGGAACA-TTT 1669
|| ||||||||||| || |||||| ||| |||| |||
Sbjct 1835 GAGTTCTGGCAGATAGTGAAAGTGCTTG-AACAGTTT 1870
> Ahg951757 jgi|Araly1|951757|scaffold_13900005.1
Length=1279
Score = 464 bits (251), Expect = 9e-130
Identities = 722/938 (77%), Gaps = 78/938 (8%)
Strand=Plus/Plus
Query 527 GAAGATGCAGAGGAATCCAGTTACTAATAAGA-AGAGATCTGTTTCTCCGTT-GCCTCAT 584
||| || |||| || || || |||||||| | | |||||||||||||| || ||||||
Sbjct 276 GAA-ATACAGACAAACCCTGTAACTAATAA-ACATAGATCTGTTTCTCC-TTCGCCTCAG 332
Query 585 ATGGCTCTTTCTGATGCT-TTTATCGAAGCAAAG-TCTGATATTAAGAGGTTTTCTACTC 642
|||||| || |||||| | |||| ||||| ||| ||||| |||||| |||||||| |
Sbjct 333 ATGGCTGTTCCTGATG-TGTTTAAGGAAGC-AAGATCTGAGCGTAAGAGATTTTCTACGC 390
Query 643 CACATCCTAGAAGAGTGGAACCAGAGAAGGGAATGAAGGCC-AAGTCGTCGTCCCGCAAA 701
||||||| |||||||||||| | || ||||||||||| ||| |||| | || | |||
Sbjct 391 CACATCCAAGAAGAGTGGAATCGGAAAAGGGAATGAA-GCCTAAGT--T-ATCTCATAAA 446
Query 702 GA-TTCTTCTGAGAAA-AAATCAGTTAATCTACGGTCCCTGTCTCACTCGGGTCCTATTA 759
| | ||| ||| ||| | |||| ||||| | |||| | || || || |||||||| |
Sbjct 447 AACTCCTT-TGA-AAAGAGATCATTTAATTTGCGGT--C--TC-CA-TCCGGTCCTATCA 498
Query 760 GGGATCTTAGTACGCAGA-AAGTTAAAGAGAGGG-GAAAGAGCAAGATA-GATA-AGAAG 815
| |||||| | || | || || || ||||||||| | |||||||||| | || | || |
Sbjct 499 GAGATCTTGGCACTCTGAGAA-TTCAAGAGAGGGTG-AAGAGCAAGA-AGGACACAGGA- 554
Query 816 TCTTCAAAGTC-TGTTGACT-ATAGAGGTTC-TAAAGTAAGTTCTGCAGGAG-TGCTTGA 871
| || ||| | | |||| | ||| || || || ||| ||| ||| || || | | |||
Sbjct 555 TGGTCTAAG-CTTTTTGA-TAATACTGG-TCGTAGAGTGAGTGCTGTAGAAGCTTC-TGA 610
Query 872 AGAATGCC-TCATTGATGTGTCTAAGTTG-TCTTATGGGGATAGGTTTGCTCACGGGAAA 929
||| | || | ||||| |||| |||||| |||| |||| || ||||||||| ||| |
Sbjct 611 AGAGTTCCGT-GTTGATATGTCAAAGTTGTTCTT-TGGGCTTAAGTTTGCTCATGGGTTA 668
Query 930 TATAGCCAGATTTATCATGGTGAA-TATGAAGGCAAAGCTGTTGCTC-TGAAGATTATCA 987
|| |||| | | || |||||| || ||||||| ||||||||||| | ||||| ||||||
Sbjct 669 TACAGCCGGCTATACCATGGT-AAGTATGAAGATAAAGCTGTTGC-CGTGAAGCTTATCA 726
Query 988 CAGCGCCTGAGGATAGTGACGA-CAT--ATTCTTGGGAGCTCGTTTAGAAAAAGAGTTTA 1044
| | ||||| | | |||||| || || |||||||||||||||||| ||| ||||||
Sbjct 727 CTGTACCTGATG--A-TGACGATAATGGATGCTTGGGAGCTCGTTTAGAGAAACAGTTTA 783
Query 1045 TCGTGGAAGCCACTCTTTTATCTCGACTAAGC-CATCCAAATGTCGTTAAGTTTGTTGGA 1103
| ||||| ||| ||||| |||||| | | | ||||| ||||| | |||||||| |||
Sbjct 784 CCAAGGAAGTCACCCTTTTGTCTCGATTGA-CTCATCCGAATGTTATAAAGTTTGTGGGA 842
Query 1104 --G--T-GA-AT---ACTGGAAACTGTATCATCACAG-AGTATGTACCTCG-AGGGTCTT 1152
| | | || ||| | | ||| || |||| | ||||| ||||| | ||| ||||
Sbjct 843 GCGTATAAAGATCCGCCTGTATATTGTGTCCTCAC-GCAGTATTTACCT-GAAGGATCTT 900
Query 1153 TAAGATCATATCTGCACAAG-CTCGAGCAGAAATCCCTTCCTTTGGAACAGCTAATCGAT 1211
||||||| | |||||||||| || ||| | | || ||||||||| || |||| || ||
Sbjct 901 TAAGATCTTTTCTGCACAAGCCT-GAGAATAGGTCTCTTCCTTTGAAAAAGCTTATAGAG 959
Query 1212 TTTGGTCTGGATATTGCTAA-AGGAATGGAATATATTCACTCAAGAGAGATAGTTCATCA 1270
|||| ||| |||||||| || |||||||||||||||||||||| || | ||| ||||||
Sbjct 960 TTTGCTCTAGATATTGC-AAGAGGAATGGAATATATTCACTCACGACACATAATTCATCG 1018
Query 1271 GGATCTGAAGCCAGAAAACGTGTTGATCGAC-AATGACTTTCACTTGAAGATTGCTGACT 1329
|||||| ||||||||||| || ||||||||| || ||||| || ||||||||||||||||
Sbjct 1019 GGATCTTAAGCCAGAAAATGTATTGATCGACGAA-GACTTCCATTTGAAGATTGCTGACT 1077
Query 1330 TTGGCATAGCGTGCGAGGAGGAGTACTGTGATGTTTTGGGGGATAACA-TAGGAACTTAT 1388
||||||||||||||||||||||||||||||| | |||| ||| || | ||||| |||
Sbjct 1078 TTGGCATAGCGTGCGAGGAGGAGTACTGTGACATGTTGGCTGATGACCCT-GGAACATAT 1136
Query 1389 AGGTGGATGGCACCTGAAGTTTTAAAACGGATACCACA 1426
|||||||||||||||||| | |||| |||| ||||||
Sbjct 1137 AGGTGGATGGCACCTGAAATGATAAA-CGGAAACCACA 1173
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69248065410
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5