BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G46940.1

Length=759
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg937435 jgi|Araly1|937435|scaffold_501626.1                        837    0.0  


> Ahg937435 jgi|Araly1|937435|scaffold_501626.1
Length=579

 Score =  837 bits (453),  Expect = 0.0
 Identities = 493/513 (96%), Gaps = 0/513 (0%)
 Strand=Plus/Plus

Query  94   CGTAAACGAACCATCACCTAAACTCCAAAAGCTCGACCGAAACGGAATCCATGGCGATTC  153
            ||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct  67   CGTCAACGAACCATCACCTAAACTCCAAAAGCTCGATCAAAACGGAATCCATGGCGATTC  126

Query  154  ATCACCATCACCATTCTTCAAAGTGAAGAAACTCTCCGAGAAAGCTGTTATACCAACACG  213
            |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct  127  ATCATCATCACCATTCTTCAAAGTGAAGAAACTCTCCGAGAAAGCTGTTTTACCAACAAG  186

Query  214  CGGCTCACCACTCTCCGCTGGATACGATCTCTCAAGTGCGGTGGATTCAAAAGTTCCAGC  273
             |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  187  AGGCTCATCACTCTCCGCTGGATACGATCTCTCAAGTGCGGTGGATTCAAAAGTTCCAGC  246

Query  274  GAGAGGTAAAGCGCTTATCCCAACGGATCTAAGTATCGCTGTTCCCGAAGGAACTTACGC  333
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  247  GAGAGGTAAAGCTCTTATCCCAACGGATCTAAGTATCGCTGTTCCCGAAGGAACTTACGC  306

Query  334  GAGAATTGCGCCGAGATCTGGTTTGGCTTGGAAACATTCGATTGATGTTGGTGCTGGTGT  393
            ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  307  GAGGATTGCGCCGAGATCGGGTTTGGCTTGGAAACATTCGATTGATGTTGGTGCTGGTGT  366

Query  394  GATTGATGCTGATTATAGAGGACCTGTTGGTGTGATTTTGTTTAATCATTCTGATGCTGA  453
            ||||||||||||||| |||||||||||||||||||||||||||||||||||||||  |||
Sbjct  367  GATTGATGCTGATTACAGAGGACCTGTTGGTGTGATTTTGTTTAATCATTCTGATTTTGA  426

Query  454  TTTTGAGGTTAAGTTCGGTGATCGAATCGCGCAGTTGATTATCGAGAAGATTGTGACTCC  513
            |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct  427  TTTTGAGGTTAAGTTCGGAGATCGAATCGCGCAATTGATTATCGAGAAGATTGTGACTCC  486

Query  514  TGATGTTGTTGAGGTTGATGATTTGGATGAGACTGTTCGTGGTGATGGTGGTTTTGGTTC  573
            |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct  487  TGATGTTGTTGAGGTTGAGGATTTGGATGATACTGTTCGTGGTGATGGTGGTTTTGGTTC  546

Query  574  TACTGGTGTCTAAGTGATAATCATCTTCTTCGT  606
            ||||||||||| |||||| ||||||||||||||
Sbjct  547  TACTGGTGTCTGAGTGATGATCATCTTCTTCGT  579



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27982221078


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5