BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G46950.1 Length=1595 Score E Sequences producing significant alignments: (Bits) Value Ahg485072 jgi|Araly1|485072|fgenesh2_kg.5__1064__AT3G46950.1 1245 0.0 Ahg475137 jgi|Araly1|475137|fgenesh2_kg.2__267__AT1G61980.1 348 9e-95 > Ahg485072 jgi|Araly1|485072|fgenesh2_kg.5__1064__AT3G46950.1 Length=1474 Score = 1245 bits (674), Expect = 0.0 Identities = 852/937 (91%), Gaps = 15/937 (2%) Strand=Plus/Plus Query 76 TCTTCCTCATGTTTTCTCTAATTCTCCATGGAAGAAAGTCTGTGGAATTACAGAAATGGC 135 |||| |||||||||||| |||| |||||||||||| |||||||||||| |||||||||| Sbjct 22 TCTT-CTCATGTTTTCTTTAATAATCCATGGAAGAAGGTCTGTGGAATTGCAGAAATGGC 80 Query 136 GTAATTTAAGAGTTACAGTGAGCATTGTGCAAAATGCATTTCCTTTTACCACCAAATCGT 195 |||||||||||||| || |||| ||| |||||||||||||| |||||||||||||||||| Sbjct 81 GTAATTTAAGAGTTTCATTGAGTATTTTGCAAAATGCATTTGCTTTTACCACCAAATCGT 140 Query 196 TCTCTTCTACAATAGCTAAAGAT-TCGAGTCCAAAGGGAAGTACTTTCACAGTCTCTTAT 254 |||||||| |||||||||||||| | |||||||||||||| |||||||| ||| ||||| Sbjct 141 TCTCTTCTGCAATAGCTAAAGATGT-GAGTCCAAAGGGAACAACTTTCACTGTCACTTAT 199 Query 255 CTCGTTGAATCATTGGGTTTGACTAAAAAACTTGCAGAAACAATCTCAAAGAAAGTCACC 314 || ||||||||||||||||| |||||||||||||||||| |||||||||||||||| | Sbjct 200 CTAGTTGAATCATTGGGTTTAACTAAAAAACTTGCAGAATCAATCTCAAAGAAAGTAAGT 259 Query 315 TTCGAAGACAAGGTAAATCCAGATTCTGTTCTGAATCTTCTTAGAAGTAATGGGTTTAAA 374 |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| Sbjct 260 TTCGAAGACAAGGTAAATCCGGATTCTGTTCTGAATCTTTTTAGAAGTAATGGGTTTAAA 319 Query 375 GATTCTCAGATATCTAGGATCATAAGGGCTTACCCACGATTGCTTGTAACAGATGCTGAG 434 ||||||||||| ||||||||||| |||||||||||| |||||||||||| ||||||||| Sbjct 320 GATTCTCAGATCTCTAGGATCATTAGGGCTTACCCAAGATTGCTTGTAATTGATGCTGAG 379 Query 435 AAATCTCTTCGTCCAAAGCTTCAGTTTTTAAAGTCTAGAGGAGCTTCAAGCTCTGAGGTC 494 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 380 AAGTCTCTTCGTCCAAAGCTTCAGTTTTTAAAGTCTAGAGGAGCTTCAAGCTCTGAGGTC 439 Query 495 ATAGAGATTGTTTCGAATGTTCCAACAATCTTGG-ATAAGAAAGGTGAAGAA-TCTGTTA 552 | ||| ||||||||||||||||| |||||||||| | |||||||| || ||| ||| ||| Sbjct 440 ACAGAAATTGTTTCGAATGTTCCTACAATCTTGGGA-AAGAAAGGGGA-GAAATCTATTA 497 Query 553 GTTTATACTATGATTTCGTTAAGGACATTATGCAAGATGGTAAAAGTTT-GTGT-ATTTC 610 | || ||||||||||||||||||||||||||| |||||||||||||||| | || ||| | Sbjct 498 GCTTGTACTATGATTTCGTTAAGGACATTATGGAAGATGGTAAAAGTTTAG-GTCATT-C 555 Query 611 TTGTCCAGAGGGAAAGAAAGGTAACAGAATTCGAAATATATCGGTTTTGAGAGAATTGGG 670 ||| |||||||| |||||||| |||| ||| |||||||| |||||||| ||||||||||| Sbjct 556 TTGGCCAGAGGGTAAGAAAGGGAACAAAATCCGAAATATCTCGGTTTTAAGAGAATTGGG 615 Query 671 AGTACCTCAGAAGTTGTTGTTTTCATTGCTTATATCTAGAT-ATCAACCTGTTTGTGGTA 729 ||| |||||||||||||||||| ||||| | || |||| || |||||||||||||||||| Sbjct 616 AGTGCCTCAGAAGTTGTTGTTTCCATTGGTCATCTCTA-ATTATCAACCTGTTTGTGGTA 674 Query 730 AAGAGAAGTTTGAAGAAAGTTTAAAGAAAGTTGTTGATATGGGTTTTGATCCGGCTAAAT 789 |||| || |||||||||| | | |||||||||||||||||||||||||||||| | |||| Sbjct 675 AAGAAAAATTTGAAGAAACTCTCAAGAAAGTTGTTGATATGGGTTTTGATCCGACCAAAT 734 Query 790 CCAA-GTTTGTGGAAGCTTTGCATGTAGTTTACGAAATGAGCGAGAAAACGATAGAAGAG 848 | || |||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 735 C-AACGTTTGTGGAAGCTTTGCATGTAGTTTACAAAATGAGCGAGAAAACGATAGAAGAG 793 Query 849 AAAGTGAATGTGTATAAGAGGTTAGGCTTTAGTGAAGCCGAGATATGGGCGATTTTCAAG 908 ||||||||||| ||||| ||||||||||||||||||| || |||||||| ||||||||| Sbjct 794 AAAGTGAATGTTTATAAAAGGTTAGGCTTTAGTGAAGTGGATATATGGGCAATTTTCAAG 853 Query 909 AAGTGGCCTTACTTTTTAAAATTCTCTGAGAAGAAGATAATTCTGATGTTTGAAACACTG 968 |||||||||| |||||| |||||||| |||||||||||||||||||||| |||||||||| Sbjct 854 AAGTGGCCTTTCTTTTTGAAATTCTCGGAGAAGAAGATAATTCTGATGTATGAAACACTG 913 Query 969 AAGAAGTGTGGTTTGGTAGAGGAAGAGATTATTTCGG 1005 ||||||||||||||||| ||||||||| | ||||||| Sbjct 914 AAGAAGTGTGGTTTGGTGGAGGAAGAGGTCATTTCGG 950 Score = 678 bits (367), Expect = 0.0 Identities = 489/544 (90%), Gaps = 23/544 (4%) Strand=Plus/Plus Query 1056 GACTCTATTGAAATG-TTCTTAGGCTTAGGATTCAGTAGAGATGATTTCAAGATGATGGT 1114 ||||||||||||| | ||| ||| |||||| |||||||||||||| |||||||||||||| Sbjct 950 GACTCTATTGAAACGTTTC-TAGACTTAGGTTTCAGTAGAGATGAGTTCAAGATGATGGT 1008 Query 1115 TAAGCGATATCCT-TGTTGCACTGCATATTCTGGC-GAGACGCTGAGGAAGAAGTTTGAG 1172 ||||||||||||| | |||||||||||| || || |||||| ||||||||||||||||| Sbjct 1009 TAAGCGATATCCTCAG-TGCACTGCATATACT-GCAGAGACGGTGAGGAAGAAGTTTGAG 1066 Query 1173 GTTTTGGTGAAGATGATGAATTGGCCGCTAGAGGCTGTGGTCATGATCCCTACGGTACTT 1232 ||||||||||||| ||||||||||| ||||| | ||| || |||||||| |||||||| Sbjct 1067 GTTTTGGTGAAGAAAATGAATTGGCCACTAGAAGATGTAGTTTTGATCCCTGCGGTACTT 1126 Query 1233 GGATACAGCTTGGAGAAGAGGATAGTGCCAAGGTCTAACGTGATCAAAGCTCTCATGTCG 1292 ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| Sbjct 1127 GGATACAGCTTGGAGAAGAGGATAGTGCCAAGGACTAACGTAATCAAAGCTCTCATGTCG 1186 Query 1293 AAAGGATTGATCGGAAGTGAAAACCCTCCGATTTCATCTGTCTTGGTATGTACTGATCAG 1352 ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1187 AAAGGATTGATTGGTAGTGAAAACCCTCCGATTTCATCTGTCTTGGTATGTACTGATCAG 1246 Query 1353 GAGTTCTTGAAAAGGTATGTGATGAAGCATGACAAGCTAGTGCCTAAGTTGATGGCTATC 1412 ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| Sbjct 1247 GAGTTCTTGAAAAGGTACGTGATGAAGCACGACAAGCTAGTGCCTAAGTTGATGGCTATC 1306 Query 1413 TTCAACAGAGGTCGTGTTTCATAGTTAATCTTTTAACGCGTGAATAGAACTGAGGAAGAG 1472 |||| || || ||| |||||||||| ||||||| | ||| | || | ||| Sbjct 1307 TTCACCACAGCTCGAGTTTCATAGTGAATCTTT---C---TGA---G----GA--A-GAG 1350 Query 1473 GAGTTTTTATTTACTAGTGTCTGTTAATGTCTAAACTGAAATCCATTTCTGTAATAGTCG 1532 |||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||| Sbjct 1351 GAGTTTTTATTTTCTAGTGTATGTCAATGTCTAAACTGAAATCCATTTCTGTAATAGTCG 1410 Query 1533 TAACGAAAAATTTAACTACTATATT-TGTGGACATGTTTAGTGATTTGAATTTCAAGTTA 1591 |||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||| Sbjct 1411 TAACGAAAAATTTAACGACTATATTCTATGGACATGTTTAGTGATTTGAATTTCAAGTTA 1470 Query 1592 AGTG 1595 |||| Sbjct 1471 AGTG 1474 > Ahg475137 jgi|Araly1|475137|fgenesh2_kg.2__267__AT1G61980.1 Length=1322 Score = 348 bits (188), Expect = 9e-95 Identities = 584/764 (76%), Gaps = 72/764 (9%) Strand=Plus/Plus Query 227 AAAGGGAAGTACTTTCACAGTCTCTTATCTCGTTGAATCATTGGGTTTGA-CTAAAAAAC 285 ||||| || ||||| ||||||||||| |||||||| || |||||||| | ||| ||| | Sbjct 149 AAAGGTAACAACTTT-ACAGTCTCTTACCTCGTTGATTCTTTGGGTTT-AGCTAGAAAGC 206 Query 286 TTGCAGAAACAATCTCAAAGAAAGTCACCTTCGAAGACAAGGTAAATCCAGATTCTGTTC 345 | |||||| | || |||| |||||| | |||||| ||||||| ||||| |||||||||| Sbjct 207 TCGCAGAATCGATTTCAAGGAAAGTTAGCTTCGAGGACAAGGCCAATCCTGATTCTGTTC 266 Query 346 TGAATCTTCTT-AGAAGTAATGGGTTTAAAGATTCTCAGATATCTAGGATCATAAGGGCT 404 |||||||| || |||||| ||||||| | ||||||||||| || || || | | || | Sbjct 267 TGAATCTT-TTGAGAAGTCATGGGTTCACTGATTCTCAGATCTCAAGCATTGTTACGGAT 325 Query 405 TACCCACGATTGCTTGTAACAGATGCTGAGAAATCTCTTCGTCCAAAGCTTCAGTTTTTA 464 || |||| ||||||| || | |||||||||||||| || |||| |||||||||||||| Sbjct 326 TATCCACAATTGCTTATAGCTGATGCTGAGAAATCCCTGGGTCCCAAGCTTCAGTTTTTG 385 Query 465 AAGTCTAGAGGAGCTTCAAGCTCTGAGGTCA-TAGAGATTGTTTCGA-ATGTTCC-AACA 521 ||||||||| |||||||||||||||| ||| | ||||||||||| | | ||||| || | Sbjct 386 CAGTCTAGAGAAGCTTCAAGCTCTGAGCTCACT-GAGATTGTTTC-ACAAGTTCCGAA-A 442 Query 522 ATCTT-GGATAAGAAAGGTG-A-AGAATCTGTTAGTTTATACTATGATTTCGTTAAGGAC 578 ||||| ||| |||| ||| | | | || || | || |||||||||||||| | || ||| Sbjct 443 ATCTTGGGA-AAGAGAGG-GCACA-AAACTATCAGCGTATACTATGATTTCATCAAAGAC 499 Query 579 A--TTA-TGCAAGAT--G-G-T--AA-AA-G----TTTGTGT-ATTTCTTGTCCAGAGGG 622 | ||| | || ||| | | | || || | | ||| | ||||| |||| |||| Sbjct 500 ACTTTATTACATGATAAGAGTTCCAAGAAGGAAAAGTCATGTCA-TTCTTTTCCACAGGG 558 Query 623 AAAGAAAGG-TAAC-AGAATTC-GAAATATATCGGTTTTGAGAGAATTGGGAGTACCTCA 679 || || ||| || | || ||||||||||||||||||||||||||||| | ||||| Sbjct 559 TAA-TCTGGAGAACAAG-A-TCAGAAATATATCGGTTTTGAGAGAATTGGGAATGCCTCA 615 Query 680 GAAGTTGTTGTTTTCATTGCTTATATCTAGAT-ATCA-ACCTGT-TTGTGGTAAAGAGAA 736 |||||||| || | ||||| || ||| | | | | |||||| || |||||||| || Sbjct 616 CAAGTTGTTATTCCCCTTGCTCATCTCTTG-TGA-CGTACCTGTCTTC-GGTAAAGAAAA 672 Query 737 GTTTGAAGAAAGTTTAAAGAAAGTTGTTGATATGGGTTTTGATCCGGC-TAAATCCAA-G 794 ||||||||| | |||||||||||||| ||||||||||||||| | | | ||| | Sbjct 673 ATTTGAAGAATCCCTCAAGAAAGTTGTTGACATGGGTTTTGATCCGACCTC--TGCAAAG 730 Query 795 TTTGTGGAAGCTTTGC-ATGTAGTTTACGAA-AT-GAGCGAGAAAACGATAGAAGAGAAA 851 ||| | |||||| | | | || ||| | || || |||||| ||||| |||||||| ||| Sbjct 731 TTTCTCGAAGCTCTACGA-GTTGTTCA--AAGATTGAGCGACAAAACAATAGAAGAAAAA 787 Query 852 GTGAATGTGTAT-AAGAGGTTAGGCTTT-A-GTGAAGCCGAGAT--ATGGGCGATT-TTC 905 || |||| |||| || |||||||||||| | ||| | || || |||||| | | ||| Sbjct 788 GTCAATGCGTATGAA-AGGTTAGGCTTTGATGTG--G--GAAATGTATGGGC-AGTGTTC 841 Query 906 AAGAAGTGGCCTTACTTTTTAA-A-ATTCTCTGAGAAGAAGATA 947 |||| |||||| ||||| | | | |||| |||||||||||| Sbjct 842 AAGAGGTGGCCAAACTTTCTGACACATTCA--GAGAAGAAGATA 883 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59763594405 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5