BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G46950.1
Length=1595
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485072 jgi|Araly1|485072|fgenesh2_kg.5__1064__AT3G46950.1 1245 0.0
Ahg475137 jgi|Araly1|475137|fgenesh2_kg.2__267__AT1G61980.1 348 9e-95
> Ahg485072 jgi|Araly1|485072|fgenesh2_kg.5__1064__AT3G46950.1
Length=1474
Score = 1245 bits (674), Expect = 0.0
Identities = 852/937 (91%), Gaps = 15/937 (2%)
Strand=Plus/Plus
Query 76 TCTTCCTCATGTTTTCTCTAATTCTCCATGGAAGAAAGTCTGTGGAATTACAGAAATGGC 135
|||| |||||||||||| |||| |||||||||||| |||||||||||| ||||||||||
Sbjct 22 TCTT-CTCATGTTTTCTTTAATAATCCATGGAAGAAGGTCTGTGGAATTGCAGAAATGGC 80
Query 136 GTAATTTAAGAGTTACAGTGAGCATTGTGCAAAATGCATTTCCTTTTACCACCAAATCGT 195
|||||||||||||| || |||| ||| |||||||||||||| ||||||||||||||||||
Sbjct 81 GTAATTTAAGAGTTTCATTGAGTATTTTGCAAAATGCATTTGCTTTTACCACCAAATCGT 140
Query 196 TCTCTTCTACAATAGCTAAAGAT-TCGAGTCCAAAGGGAAGTACTTTCACAGTCTCTTAT 254
|||||||| |||||||||||||| | |||||||||||||| |||||||| ||| |||||
Sbjct 141 TCTCTTCTGCAATAGCTAAAGATGT-GAGTCCAAAGGGAACAACTTTCACTGTCACTTAT 199
Query 255 CTCGTTGAATCATTGGGTTTGACTAAAAAACTTGCAGAAACAATCTCAAAGAAAGTCACC 314
|| ||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
Sbjct 200 CTAGTTGAATCATTGGGTTTAACTAAAAAACTTGCAGAATCAATCTCAAAGAAAGTAAGT 259
Query 315 TTCGAAGACAAGGTAAATCCAGATTCTGTTCTGAATCTTCTTAGAAGTAATGGGTTTAAA 374
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 260 TTCGAAGACAAGGTAAATCCGGATTCTGTTCTGAATCTTTTTAGAAGTAATGGGTTTAAA 319
Query 375 GATTCTCAGATATCTAGGATCATAAGGGCTTACCCACGATTGCTTGTAACAGATGCTGAG 434
||||||||||| ||||||||||| |||||||||||| |||||||||||| |||||||||
Sbjct 320 GATTCTCAGATCTCTAGGATCATTAGGGCTTACCCAAGATTGCTTGTAATTGATGCTGAG 379
Query 435 AAATCTCTTCGTCCAAAGCTTCAGTTTTTAAAGTCTAGAGGAGCTTCAAGCTCTGAGGTC 494
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 380 AAGTCTCTTCGTCCAAAGCTTCAGTTTTTAAAGTCTAGAGGAGCTTCAAGCTCTGAGGTC 439
Query 495 ATAGAGATTGTTTCGAATGTTCCAACAATCTTGG-ATAAGAAAGGTGAAGAA-TCTGTTA 552
| ||| ||||||||||||||||| |||||||||| | |||||||| || ||| ||| |||
Sbjct 440 ACAGAAATTGTTTCGAATGTTCCTACAATCTTGGGA-AAGAAAGGGGA-GAAATCTATTA 497
Query 553 GTTTATACTATGATTTCGTTAAGGACATTATGCAAGATGGTAAAAGTTT-GTGT-ATTTC 610
| || ||||||||||||||||||||||||||| |||||||||||||||| | || ||| |
Sbjct 498 GCTTGTACTATGATTTCGTTAAGGACATTATGGAAGATGGTAAAAGTTTAG-GTCATT-C 555
Query 611 TTGTCCAGAGGGAAAGAAAGGTAACAGAATTCGAAATATATCGGTTTTGAGAGAATTGGG 670
||| |||||||| |||||||| |||| ||| |||||||| |||||||| |||||||||||
Sbjct 556 TTGGCCAGAGGGTAAGAAAGGGAACAAAATCCGAAATATCTCGGTTTTAAGAGAATTGGG 615
Query 671 AGTACCTCAGAAGTTGTTGTTTTCATTGCTTATATCTAGAT-ATCAACCTGTTTGTGGTA 729
||| |||||||||||||||||| ||||| | || |||| || ||||||||||||||||||
Sbjct 616 AGTGCCTCAGAAGTTGTTGTTTCCATTGGTCATCTCTA-ATTATCAACCTGTTTGTGGTA 674
Query 730 AAGAGAAGTTTGAAGAAAGTTTAAAGAAAGTTGTTGATATGGGTTTTGATCCGGCTAAAT 789
|||| || |||||||||| | | |||||||||||||||||||||||||||||| | ||||
Sbjct 675 AAGAAAAATTTGAAGAAACTCTCAAGAAAGTTGTTGATATGGGTTTTGATCCGACCAAAT 734
Query 790 CCAA-GTTTGTGGAAGCTTTGCATGTAGTTTACGAAATGAGCGAGAAAACGATAGAAGAG 848
| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 735 C-AACGTTTGTGGAAGCTTTGCATGTAGTTTACAAAATGAGCGAGAAAACGATAGAAGAG 793
Query 849 AAAGTGAATGTGTATAAGAGGTTAGGCTTTAGTGAAGCCGAGATATGGGCGATTTTCAAG 908
||||||||||| ||||| ||||||||||||||||||| || |||||||| |||||||||
Sbjct 794 AAAGTGAATGTTTATAAAAGGTTAGGCTTTAGTGAAGTGGATATATGGGCAATTTTCAAG 853
Query 909 AAGTGGCCTTACTTTTTAAAATTCTCTGAGAAGAAGATAATTCTGATGTTTGAAACACTG 968
|||||||||| |||||| |||||||| |||||||||||||||||||||| ||||||||||
Sbjct 854 AAGTGGCCTTTCTTTTTGAAATTCTCGGAGAAGAAGATAATTCTGATGTATGAAACACTG 913
Query 969 AAGAAGTGTGGTTTGGTAGAGGAAGAGATTATTTCGG 1005
||||||||||||||||| ||||||||| | |||||||
Sbjct 914 AAGAAGTGTGGTTTGGTGGAGGAAGAGGTCATTTCGG 950
Score = 678 bits (367), Expect = 0.0
Identities = 489/544 (90%), Gaps = 23/544 (4%)
Strand=Plus/Plus
Query 1056 GACTCTATTGAAATG-TTCTTAGGCTTAGGATTCAGTAGAGATGATTTCAAGATGATGGT 1114
||||||||||||| | ||| ||| |||||| |||||||||||||| ||||||||||||||
Sbjct 950 GACTCTATTGAAACGTTTC-TAGACTTAGGTTTCAGTAGAGATGAGTTCAAGATGATGGT 1008
Query 1115 TAAGCGATATCCT-TGTTGCACTGCATATTCTGGC-GAGACGCTGAGGAAGAAGTTTGAG 1172
||||||||||||| | |||||||||||| || || |||||| |||||||||||||||||
Sbjct 1009 TAAGCGATATCCTCAG-TGCACTGCATATACT-GCAGAGACGGTGAGGAAGAAGTTTGAG 1066
Query 1173 GTTTTGGTGAAGATGATGAATTGGCCGCTAGAGGCTGTGGTCATGATCCCTACGGTACTT 1232
||||||||||||| ||||||||||| ||||| | ||| || |||||||| ||||||||
Sbjct 1067 GTTTTGGTGAAGAAAATGAATTGGCCACTAGAAGATGTAGTTTTGATCCCTGCGGTACTT 1126
Query 1233 GGATACAGCTTGGAGAAGAGGATAGTGCCAAGGTCTAACGTGATCAAAGCTCTCATGTCG 1292
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 1127 GGATACAGCTTGGAGAAGAGGATAGTGCCAAGGACTAACGTAATCAAAGCTCTCATGTCG 1186
Query 1293 AAAGGATTGATCGGAAGTGAAAACCCTCCGATTTCATCTGTCTTGGTATGTACTGATCAG 1352
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1187 AAAGGATTGATTGGTAGTGAAAACCCTCCGATTTCATCTGTCTTGGTATGTACTGATCAG 1246
Query 1353 GAGTTCTTGAAAAGGTATGTGATGAAGCATGACAAGCTAGTGCCTAAGTTGATGGCTATC 1412
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1247 GAGTTCTTGAAAAGGTACGTGATGAAGCACGACAAGCTAGTGCCTAAGTTGATGGCTATC 1306
Query 1413 TTCAACAGAGGTCGTGTTTCATAGTTAATCTTTTAACGCGTGAATAGAACTGAGGAAGAG 1472
|||| || || ||| |||||||||| ||||||| | ||| | || | |||
Sbjct 1307 TTCACCACAGCTCGAGTTTCATAGTGAATCTTT---C---TGA---G----GA--A-GAG 1350
Query 1473 GAGTTTTTATTTACTAGTGTCTGTTAATGTCTAAACTGAAATCCATTTCTGTAATAGTCG 1532
|||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 1351 GAGTTTTTATTTTCTAGTGTATGTCAATGTCTAAACTGAAATCCATTTCTGTAATAGTCG 1410
Query 1533 TAACGAAAAATTTAACTACTATATT-TGTGGACATGTTTAGTGATTTGAATTTCAAGTTA 1591
|||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1411 TAACGAAAAATTTAACGACTATATTCTATGGACATGTTTAGTGATTTGAATTTCAAGTTA 1470
Query 1592 AGTG 1595
||||
Sbjct 1471 AGTG 1474
> Ahg475137 jgi|Araly1|475137|fgenesh2_kg.2__267__AT1G61980.1
Length=1322
Score = 348 bits (188), Expect = 9e-95
Identities = 584/764 (76%), Gaps = 72/764 (9%)
Strand=Plus/Plus
Query 227 AAAGGGAAGTACTTTCACAGTCTCTTATCTCGTTGAATCATTGGGTTTGA-CTAAAAAAC 285
||||| || ||||| ||||||||||| |||||||| || |||||||| | ||| ||| |
Sbjct 149 AAAGGTAACAACTTT-ACAGTCTCTTACCTCGTTGATTCTTTGGGTTT-AGCTAGAAAGC 206
Query 286 TTGCAGAAACAATCTCAAAGAAAGTCACCTTCGAAGACAAGGTAAATCCAGATTCTGTTC 345
| |||||| | || |||| |||||| | |||||| ||||||| ||||| ||||||||||
Sbjct 207 TCGCAGAATCGATTTCAAGGAAAGTTAGCTTCGAGGACAAGGCCAATCCTGATTCTGTTC 266
Query 346 TGAATCTTCTT-AGAAGTAATGGGTTTAAAGATTCTCAGATATCTAGGATCATAAGGGCT 404
|||||||| || |||||| ||||||| | ||||||||||| || || || | | || |
Sbjct 267 TGAATCTT-TTGAGAAGTCATGGGTTCACTGATTCTCAGATCTCAAGCATTGTTACGGAT 325
Query 405 TACCCACGATTGCTTGTAACAGATGCTGAGAAATCTCTTCGTCCAAAGCTTCAGTTTTTA 464
|| |||| ||||||| || | |||||||||||||| || |||| ||||||||||||||
Sbjct 326 TATCCACAATTGCTTATAGCTGATGCTGAGAAATCCCTGGGTCCCAAGCTTCAGTTTTTG 385
Query 465 AAGTCTAGAGGAGCTTCAAGCTCTGAGGTCA-TAGAGATTGTTTCGA-ATGTTCC-AACA 521
||||||||| |||||||||||||||| ||| | ||||||||||| | | ||||| || |
Sbjct 386 CAGTCTAGAGAAGCTTCAAGCTCTGAGCTCACT-GAGATTGTTTC-ACAAGTTCCGAA-A 442
Query 522 ATCTT-GGATAAGAAAGGTG-A-AGAATCTGTTAGTTTATACTATGATTTCGTTAAGGAC 578
||||| ||| |||| ||| | | | || || | || |||||||||||||| | || |||
Sbjct 443 ATCTTGGGA-AAGAGAGG-GCACA-AAACTATCAGCGTATACTATGATTTCATCAAAGAC 499
Query 579 A--TTA-TGCAAGAT--G-G-T--AA-AA-G----TTTGTGT-ATTTCTTGTCCAGAGGG 622
| ||| | || ||| | | | || || | | ||| | ||||| |||| ||||
Sbjct 500 ACTTTATTACATGATAAGAGTTCCAAGAAGGAAAAGTCATGTCA-TTCTTTTCCACAGGG 558
Query 623 AAAGAAAGG-TAAC-AGAATTC-GAAATATATCGGTTTTGAGAGAATTGGGAGTACCTCA 679
|| || ||| || | || ||||||||||||||||||||||||||||| | |||||
Sbjct 559 TAA-TCTGGAGAACAAG-A-TCAGAAATATATCGGTTTTGAGAGAATTGGGAATGCCTCA 615
Query 680 GAAGTTGTTGTTTTCATTGCTTATATCTAGAT-ATCA-ACCTGT-TTGTGGTAAAGAGAA 736
|||||||| || | ||||| || ||| | | | | |||||| || |||||||| ||
Sbjct 616 CAAGTTGTTATTCCCCTTGCTCATCTCTTG-TGA-CGTACCTGTCTTC-GGTAAAGAAAA 672
Query 737 GTTTGAAGAAAGTTTAAAGAAAGTTGTTGATATGGGTTTTGATCCGGC-TAAATCCAA-G 794
||||||||| | |||||||||||||| ||||||||||||||| | | | ||| |
Sbjct 673 ATTTGAAGAATCCCTCAAGAAAGTTGTTGACATGGGTTTTGATCCGACCTC--TGCAAAG 730
Query 795 TTTGTGGAAGCTTTGC-ATGTAGTTTACGAA-AT-GAGCGAGAAAACGATAGAAGAGAAA 851
||| | |||||| | | | || ||| | || || |||||| ||||| |||||||| |||
Sbjct 731 TTTCTCGAAGCTCTACGA-GTTGTTCA--AAGATTGAGCGACAAAACAATAGAAGAAAAA 787
Query 852 GTGAATGTGTAT-AAGAGGTTAGGCTTT-A-GTGAAGCCGAGAT--ATGGGCGATT-TTC 905
|| |||| |||| || |||||||||||| | ||| | || || |||||| | | |||
Sbjct 788 GTCAATGCGTATGAA-AGGTTAGGCTTTGATGTG--G--GAAATGTATGGGC-AGTGTTC 841
Query 906 AAGAAGTGGCCTTACTTTTTAA-A-ATTCTCTGAGAAGAAGATA 947
|||| |||||| ||||| | | | |||| ||||||||||||
Sbjct 842 AAGAGGTGGCCAAACTTTCTGACACATTCA--GAGAAGAAGATA 883
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59763594405
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5