BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G46980.3
Length=1883
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485075 jgi|Araly1|485075|fgenesh2_kg.5__1067__AT3G46980.1 2647 0.0
> Ahg485075 jgi|Araly1|485075|fgenesh2_kg.5__1067__AT3G46980.1
Length=1882
Score = 2647 bits (1433), Expect = 0.0
Identities = 1734/1875 (92%), Gaps = 38/1875 (2%)
Strand=Plus/Plus
Query 5 ACCGGAGTAATCGTAAGCAGCTTCGACTGGTGAAAATGTGTTACTCTCTCTCTATACAAT 64
|||||| ||||||||||||||| ||| ||||||||||||||| |||||||||||||||||
Sbjct 1 ACCGGAATAATCGTAAGCAGCTCCGATTGGTGAAAATGTGTTGCTCTCTCTCTATACAAT 60
Query 65 CTTCAATTGACTTCCATAATCGAAACGCTCTAAAAATCCATGGAGATCGAGCAAT-TTTG 123
||||||| ||||||| |||||||| | | |||||||||||||||||||||||||| || |
Sbjct 61 CTTCAATAGACTTCCGTAATCGAAGCTCCCTAAAAATCCATGGAGATCGAGCAATCTTGG 120
Query 124 ACTTCGAACTTACCTACACTCAGGAGGATTCCGTTTTTGCCGGAGCGAGATCGCCGGAGA 183
| ||||||||||||| |||| ||| ||||||||| |||||||||||||||||||||||||
Sbjct 121 A-TTCGAACTTACCTTCACTGAGGTGGATTCCGTCTTTGCCGGAGCGAGATCGCCGGAGA 179
Query 184 AAGTTGGTCCTCTG-TACCGGGAG-AGTCGTA-AACTCATTGAAATTCACCGGAAACACT 240
|||||| | ||||| | ||||||| || |||| | || |||| ||||||| |||| |||
Sbjct 180 AAGTTGTTACTCTGCT-CCGGGAGAAG-CGTAGGA-TCGTTGAGATTCACCAGAAATACT 236
Query 241 TCCGTCGATCTATGTGGTATTCCTCGTCATCGATTAAGAGTTTCTTGCAGCGATGCTCGC 300
||||| || ||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 237 GCCGTCCATTTATGTGGTATTCCGCGTCATCGATTAAGAGTGTCTTGCAGCGATGCTCGC 296
Query 301 CGTACACCGGAAGAAACGGCGGCGGAGTTGACGGCGCAACCCAATTTTTCAGAATTTATA 360
||| | |||||||| |||||||||||| ||||||||||||| |||||||| |||||||||
Sbjct 297 CGTTCGCCGGAAGAGACGGCGGCGGAGATGACGGCGCAACCTAATTTTTCGGAATTTATA 356
Query 361 ACGTCGGAGAGAGTCAAAGTGGTTGCGATGCTCGCGCTTGCTTTGGCGCTATGCAATGCG 420
|||||||||||||| |||||||| |||||||| ||||||||| ||||||| |||||||||
Sbjct 357 ACGTCGGAGAGAGTGAAAGTGGTCGCGATGCTTGCGCTTGCTCTGGCGCTGTGCAATGCG 416
Query 421 GATCGTGTTGTGATGTCCGTTGCGATTGTTCCTCTTTCGCTTTCTCGTGGATGGAGCAAA 480
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 417 GATCGTGTTGTGATGTCCGTCGCGATTGTTCCTCTTTCGCTTTCTCGTGGATGGAGCAAG 476
Query 481 TCATTTTCCGGTATCGTTCAGTCATCGTTTCTATGGGGATACTTAATTTCTCCAATTGCT 540
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||
Sbjct 477 TCATTTTCCGGTATCGTTCAGTCATCGTTTCTGTGGGGATACTTAATTTCACCAATAGCT 536
Query 541 GGTGGAACTTTGGTGGACCGTTATGGTGGTAAAGTAGTCATGGCGTGGGGTGTGGCTTTG 600
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 537 GGTGGAACTTTGGTGGACCGTTATGGCGGTAAAGTAGTCATGGCGTGGGGTGTGGCTCTG 596
Query 601 TGGTCGTTGGCAACTTTTCTTACCCCTTGGGCGGCTGATAGTTCTTTGTGGGCTCTTCTT 660
||||||||||| ||||| |||||||||||||| |||||||||||||||||||| ||||||
Sbjct 597 TGGTCGTTGGCTACTTTCCTTACCCCTTGGGCTGCTGATAGTTCTTTGTGGGCACTTCTT 656
Query 661 GCTGCAAGAGCGATGGTTGGGGTTGCTGAAGGAGTGGCTCTTCCTTGTATGAACAACATG 720
||||||||||| |||||||| |||||||||||||| ||||||||||| ||||||||||||
Sbjct 657 GCTGCAAGAGCTATGGTTGGAGTTGCTGAAGGAGTAGCTCTTCCTTGCATGAACAACATG 716
Query 721 GTTGCGAGATGGTTTCCCCCAACAGAACGTTCTAGGGCGGTTGGTATTGCAATGGCAGGG 780
|||||||||||||||||| ||||||||||||| |||||||||||||| || ||||| |||
Sbjct 717 GTTGCGAGATGGTTTCCCTCAACAGAACGTTCAAGGGCGGTTGGTATCGCTATGGCGGGG 776
Query 781 TTTCAGCTTGGGAATGTTGTAGGACTCATGTTGTCTCCTATTCTTATGTCTCAAGGAGGT 840
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 777 TTTCAGCTTGGGAATGTTGTAGGACTCATGTTGTCTCCTATTCTTATGTCTCAAGGTGGT 836
Query 841 ATATATGGCCCATTTGTAATTTTTGGACTATCGGGGTTCCTTTGGTTGCTCGTGTGGCTC 900
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 837 ATATATGGCCCATTTGTAATATTTGGGCTATCGGGGTTCCTTTGGTTGCTCGTGTGGCTC 896
Query 901 TCTGCAACGTCAAGTGCACCAGATCGACATCCTCAGATTACAAAGTCTGAACTTGAGTAT 960
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 TCTGCGACATCAAGTGCACCAGATCGACATCCTCAGATTACAAAGTCTGAACTTGAGTAT 956
Query 961 ATAAAGCAAAAGAAGCAAATATCTACTATGGAGAACAAACGAATTAGCACAAGTGGAATA 1020
|||||||||||| ||||| ||||||| |||||||||||||| | |||| ||||||||
Sbjct 957 ATAAAGCAAAAGCAGCAACCATCTACTGGGGAGAACAAACGAAACACCACAGGTGGAATA 1016
Query 1021 CCTCCTTTTGGACGCCTTCTCTCCAAGATGCCGACTTGGGCTGTTATAGTTGCAAATTCC 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 CCTCCTTTTGGACGCCTTCTCTCCAAGATGCCGACTTGGGCTGTTATAGTTGCAAATTCC 1076
Query 1081 ATGCATAGCTGGGGTTTCTTTGTGATTCTTTCATGGATGCCCATATACTTCAATTCAGTA 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 ATGCATAGCTGGGGTTTCTTTGTGATTCTTTCATGGATGCCCATATACTTCAATTCAGTA 1136
Query 1141 TATCATGTGAACCTCAAACAAGCTGCTTGGTTTAGTGCCGTTCCATGGAGTATGATGGCT 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 TATCATGTGAACCTCAAACAAGCTGCTTGGTTTAGTGCCGTTCCATGGAGTATGATGGCT 1196
Query 1201 TTCACAGGATACATTGCTGGTTTTTGGTCGGATTTGTTGATACGGCGTGGTACAAGCATC 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 TTCACAGGATACATTGCTGGTTTTTGGTCGGATTTGTTGATACGGCGTGGTACAAGCATC 1256
Query 1261 ACCTTAACGCGAAAAATCATGCAGTCCATTGGTTTCATTGGTCCTGGAATTGCTCTCATT 1320
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1257 ACCTTAACGCGAAAAATCATGCAGTCCATTGGTTTCATTGGTCCTGGAATTTCTCTCATT 1316
Query 1321 GGTCTAACGACGGCAAAACAACCTTTAGTGGCATCAGCCTGGCTTAGTTTAGCCGTTGGG 1380
||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1317 GGTCTAACGACAGCGAAACAACCTTTAGTAGCATCAGCCTGGCTTAGTTTAGCCGTTGGG 1376
Query 1381 CTTAAATCATTCAGCCATTTGGGGTTTCTTATTAATCTTCAGGAAATTGCTCCCGAATAT 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1377 CTTAAATCATTCAGCCATTTGGGGTTTCTTATTAATCTTCAGGAAATTGCTCCAGAGTAT 1436
Query 1441 TCCGGTGTTCTACATGGAATGTGTCTTACTGCTGGGACATTAGCTGCGATAGTTGGCACA 1500
|| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1437 TCGGGTGTTCTACATGGAATGTGTCTTACTGCTGGGACTTTGGCTGCGATAGTTGGCACA 1496
Query 1501 GTTGGAGCTGGTTTCTTTGTAGAACTATTGGGCTCCTTCCAGGGATTCATCCTTCTTACA 1560
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1497 GTTGGAACTGGTTTCTTTGTAGAACTATTGGGCTCCTTCCAAGGATTCATCCTTCTTACA 1556
Query 1561 GCAATATTGTATCTCCTTTCTGCTCTCTTTTACAACATATACGCAACTGGAGAAAGAGTA 1620
||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1557 GCAATTTTGTATCTTCTTTCTGCTCTCTTTTACAACATATATGCAACTGGAGAAAGAGTC 1616
Query 1621 GATTTTGACACAACAGCAGCTTGAAGGTGACCACAAAGTCACTTAATAGGTGGATCAGCT 1680
||||||||||| ||||| ||||||| |||||||||||| ||||||||||||||||||
Sbjct 1617 GATTTTGACACTACAGC---TTGAAGGAGACCACAAAGTCGGTTAATAGGTGGATCAGCT 1673
Query 1681 AGTAAAGAAGTTGCAACTCTATATAGAATCAGCTTTTGCTCTCCAAGTAAATACCAGGAA 1740
|||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||
Sbjct 1674 AGTAGAGAAGTTGCAACTCTAAATAGAATCAGCTTTTGCTCTCCAAGTAAATATCAGAAA 1733
Query 1741 CAAGAC----CTCGGCTTTGTACAGAAACTAGAATTTCTTCGTCTCGATGGTTCTCTCCT 1796
||||| |||| ||||||||||||||||| | || | || ||
Sbjct 1734 CAAGATATATCTCGACTTTGTACAGAAACTAG--T--CT-C--CT---TG---------- 1773
Query 1797 TGATAAATAAATGAAAAAATGTAGCAAGTTATCTATGTTCAATGTCGTGAATCGCCTTAG 1856
|||||||| |||||||||||| |||||| |||||||||| |||| |||| |||||| |
Sbjct 1774 --ATAAATAA-TGAAAAAATGTACCAAGTTTTCTATGTTCAGTGTCATGAAACGCCTTTG 1830
Query 1857 AGAAGATAATGAAAA 1871
||||||||||| |||
Sbjct 1831 AGAAGATAATGGAAA 1845
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70733584965
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5