BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G47000.1
Length=2019
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485079 jgi|Araly1|485079|fgenesh2_kg.5__1071__AT3G47000.1 3068 0.0
Ahg323329 jgi|Araly1|323329|fgenesh1_pm.C_scaffold_5000873 1768 0.0
Ahg485082 jgi|Araly1|485082|fgenesh2_kg.5__1074__AT3G47050.1 1541 0.0
Ahg485080 jgi|Araly1|485080|fgenesh2_kg.5__1072__AT3G47040.1 918 0.0
Ahg485078 jgi|Araly1|485078|fgenesh2_kg.5__1070__AT3G46990.1 165 1e-39
> Ahg485079 jgi|Araly1|485079|fgenesh2_kg.5__1071__AT3G47000.1
Length=2011
Score = 3068 bits (1661), Expect = 0.0
Identities = 1899/2015 (94%), Gaps = 11/2015 (1%)
Strand=Plus/Plus
Query 12 AAGAAGAGTAAAGAAAATGGTCGTC---GAGGAGTCATCATGCGTTTACAAGAACGGAGA 68
||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||
Sbjct 1 AAGAAGAGTAAAGAAAATGGTGGTCAAGGAGGAGTCATCATGCGTTTACAAGAACCAAGA 60
Query 69 CGCGCCAGTGGAGGCGCGTGTGAAGGACCTTCTCTCTCGCATGACTTTGCCGGAGAAGAT 128
|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 61 CGCGCCAGTGGAGGTGCGTGTAAAGGACCTTCTCTCTCGCATGACTTTGCCGGAGAAGAT 120
Query 129 CGGTCAGATGACTCAAATCGAACGCAGAGTCGCTTCTCCCTCCGCCTTTACAGATTTCTT 188
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 121 CGGTCAGATGACTCAAATCGAACGCAGAGTCGCTTCTCACGCCGCCTTTACAGATTTCTT 180
Query 189 CATCGGAAGTGTACTAAACGCTGGAGGTAGTGTACCGTTCGAGGACGCTAAGTCATCGGA 248
||||||||||||| ||||||| ||||| ||||| ||||| ||||| |||||||| |||||
Sbjct 181 CATCGGAAGTGTATTAAACGCCGGAGGGAGTGTGCCGTTTGAGGATGCTAAGTCGTCGGA 240
Query 249 TTGGGCTGATATGATTGATGGTTTTCAGCGATCAGCGTTAGCGTCGCGTTTGGGAATTCC 308
||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||
Sbjct 241 TTGGGCTGATATGATCGACAGTTTTCAGCGTTCAGCGTTAGCGTCGCGTTTGGGAATTCC 300
Query 309 AATTATCTATGGCACTGACGCTGTCCACGGCAACAATAATGTCTACGGCGCCACTGTCTT 368
||| ||||| || ||||||||||||||||| ||||| ||||||||||||||||| |||||
Sbjct 301 AATCATCTACGGTACTGACGCTGTCCACGGGAACAACAATGTCTACGGCGCCACCGTCTT 360
Query 369 CCCTCACAACATTGGCCTCGGAGCCACCAGAGACGCAGATTTGGTCAGAAGAATTGGAGC 428
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 361 CCCCCACAACATTGGCCTCGGAGCCACCAGAGACGCAGATTTGGTAAGAAGAATTGGAGC 420
Query 429 AGCAACTGCACTTGAAGTAAGAGCGAGCGGGGTTCATTGGGCATTTTCTCCTTGCGTGGC 488
||||||||||||||| ||||||||||||||| ||||||||| ||| |||||||||||||
Sbjct 421 TGCAACTGCACTTGAAATAAGAGCGAGCGGGGCTCATTGGGCGTTTGCTCCTTGCGTGGC 480
Query 489 CGTTTTGAGAGATCCGAGGTGGGGAAGATGCTATGAGAGTTATGGAGAAGATCCTGAACT 548
|||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||
Sbjct 481 CGTTTTGAGAGATCCGAGATGGGGACGATGCTATGAGAGTTATGGAGAAGATCCTGGACT 540
Query 549 TGTCTGTGAGATGACTTCTCTTGTCTCGGGCCTACAAGGTGTGCCACCAGAAGAACACCC 608
|||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||
Sbjct 541 TGTCTGTGAGATGACTTCGCTTGTCTCGGGACTACAAGGCGTGCCACCAGAAGAACACCC 600
Query 609 AAATGGTTATCCTTTTGTTGCAGGAAGAAACAACGTCGTCGCGTGTGTCAAACACTTTGT 668
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 601 AAATGGTTATCCTTTTGTTGCGGGAAGAAACAATGTCGTCGCGTGTGTCAAACACTTTGT 660
Query 669 TGGAGATGGTGGTACTGACAAGGGCATAAATGAAGGGAACACCATCGCTTCATATGAAGA 728
||||||||||||||| ||||||||| |||| |||||||||||||| || |||||||||||
Sbjct 661 TGGAGATGGTGGTACCGACAAGGGCGTAAACGAAGGGAACACCATTGCGTCATATGAAGA 720
Query 729 ATTAGAGAAGATACATATTCCTCCTTATCTGAAGTGTCTTGCTCAGGGAGTTTCCACGGT 788
|||||||||||||| |||||||| |||||||| ||||||||||||||||| ||||||||
Sbjct 721 CTTAGAGAAGATACACATTCCTCCATATCTGAACTGTCTTGCTCAGGGAGTCTCCACGGT 780
Query 789 TATGGCGTCTTACTCCAGTTGGAATGGAACTAGACTGCACGCCGACCGTTTTCTCTTGAC 848
|||||| ||||||||||||||||||||||||||||| ||||| ||| |||||||||||||
Sbjct 781 TATGGCATCTTACTCCAGTTGGAATGGAACTAGACTTCACGCTGACTGTTTTCTCTTGAC 840
Query 849 AGAAATTCTAAAGGAAAAACTTGGTTTCAAGGGATTTCTAGTCTCAGACTGGGAAGGTTT 908
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 841 AGAAATTCTAAAGGAAAAACTCGGTTTCAAGGGATTTCTAGTCTCAGACTGGGAAGGTTT 900
Query 909 GGACCGGCTTAGTGAGCCTCAGGGATCAAACTACCGCTACTGCATTAAAACTGCGGTTAA 968
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 901 GGACCGGCTTAGTGAGCCTCAGGGATCAAACTACCGTTACTGCATTAAAACTGCGGTTAA 960
Query 969 TGCTGGCATTGACATGGTTATGGTACCATTTAAGTACGAACAGTTCATACAGGACATGAC 1028
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 961 TGCTGGCATTGACATGGTTATGGTACCATTCAAGTACGAACAGTTCATACAGGACATGAC 1020
Query 1029 AGATCTGGTAGAGTCAGGGGAAATA-CCAATGGCTCGGATCAATGATGCTGTTGAAAGAA 1087
||||||||||||||||||||||||| || |||| |||| |||||||||||||||||||||
Sbjct 1021 AGATCTGGTAGAGTCAGGGGAAATATCC-ATGGATCGGGTCAATGATGCTGTTGAAAGAA 1079
Query 1088 TACTCAGAGTGAAATTTGTCGCTGGTCTTTTTGGACATCCTCTCACAGATCGATCTTTGT 1147
|| ||||||||||||||||||||||||| || | | ||||||||||||||||||| ||||
Sbjct 1080 TAGTCAGAGTGAAATTTGTCGCTGGTCTCTTCGAATATCCTCTCACAGATCGATCATTGT 1139
Query 1148 TGCCTACTGTTGGTTGCAAGGAACATAGAGAATTGGCGCAGGAAGCAGTTAGAAAGTCGT 1207
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 TACCTATTGTTGGTTGCAAGGAACATAGAGAATTGGCGCAGGAAGCAGTTAGAAAGTCGT 1199
Query 1208 TAGTTCTGCTAAAGAGTGGCAAAAATGCTGATAAACCGTTTCTGCCACTAGATCGCAACG 1267
||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 1200 TAGTTCTGCTAAAGAATGGCAAAAATGCTGATAAACCATTTCTGCCACTAGATCGCCACG 1259
Query 1268 CTAAGAGGATTCTAGTCACTGGAACTCACGCAGATGATCTTGGATATCAGTGCGGAGGAT 1327
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 CCAAGAGGATTCTAGTCACTGGAACTCACGCAGATGATCTTGGATATCAGTGCGGAGGAT 1319
Query 1328 GGACAAAGACATGGTTCGGTCTAAGCGGCAGGATCACAATTGGCACTACACTTTTGGACG 1387
|||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||
Sbjct 1320 GGACAAAGACATGGTTCGGTCTAAGCGGCAGGATCACAATCGGCACGACGCTTTTGGACG 1379
Query 1388 CCATAAAAGAAGCAGTTGGAGACGAAACCGAAGTAATCTATGAGAAAACTCCATCAAAGG 1447
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1380 CCATTAAAGAAGCAGTTGGAGACGAAACTGAAGTAATCTATGAGAAAACTCCATCAAAGG 1439
Query 1448 AAACCTTAGCCTCAAGTGAAGGATTCTCTTACGCCATTGTTGCAGTCGGGGAACCGCCCT 1507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 AAACCTTAGCCTCAAGTGAAGGATTCTCTTACGCCATTGTTGCAGTCGGGGAACCGCCCT 1499
Query 1508 ATGCAGAGACGATGGGGGATAACTCGGAACTCAGAATACCTTTTAATGGTA-CTGACATT 1566
||||||||||||||||||||||||||||||||| |||| | |||||||||| | ||||||
Sbjct 1500 ATGCAGAGACGATGGGGGATAACTCGGAACTCAAAATATCATTTAATGGTAGC-GACATT 1558
Query 1567 GTCACCGCAGTTGCAGAGATAATCCCGACTCTGGTGATATTGATCTCAGGACGACCTGTG 1626
|| || || || |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1559 GTAACTGCGGTAGCAGAGATAATCCCGACTCTGGTGATCTTGATCTCAGGACGACCTGTG 1618
Query 1627 GTTTTGGAGCCGACGGTTCTTGAAAAGACAGAGGCTCTGGTTGCTGCTTGGCTGCCTGGA 1686
||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1619 GTTCTGGAGCCGACGGTTCTTGAAAAGACAGAGGCTCTGGTCGCTGCTTGGCTGCCTGGA 1678
Query 1687 ACAGAAGGGCAAGGGGTGGCTGACGTTGTTTTTGGAGATTATGACTTCAAGGGGAAGTTG 1746
||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1679 ACAGAAGGGCAAGGGATGGCTGACGTTATTTTTGGAGATTATGACTTCAAGGGGAAGTTA 1738
Query 1747 CCAGTGAGCTGGTTCAAACACGTTGAGCATTTGCCACTAGATGCTCATG-CCAATTCTTA 1805
|||||||| |||||||||| |||||||||||||||||||||||||| | ||||||| ||
Sbjct 1739 CCAGTGAGTTGGTTCAAACGTGTTGAGCATTTGCCACTAGATGCTCA-GACCAATTCGTA 1797
Query 1806 TGACCCATTGTTCCCGTTTGGTTTCGGTCTCAATTCAAAACCAGTGTAACTTCACTGGTC 1865
||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||
Sbjct 1798 TGACCCATTGTTCCCTTTTGGTTTCGGTCTCAATTCAAAACCGGTGTAACTTCACCAGTC 1857
Query 1866 TGATTGATGTACAGGAACATCGGGGAATTATGTTATGACATATATTACACGCAATGTCGT 1925
|||||||| || ||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1858 GGATTGATGAACCGGAACGTCGGGGAAGTATGTTATGACATATATTACACGCAATGTCGT 1917
Query 1926 ATTTGTATAAGCAAACCATGCA-AAAACAATGTATTGTTGATGTGCTTTTATGAGGAAAA 1984
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 1918 ATTTGTATAAGCAAACCATG-AGAAAACAATGTATTGTTGATGTGCTTTTATGAGGAAAA 1976
Query 1985 TATATGAGAAGGAAAACAAACATTGGTGTTGATGT 2019
|||||||||||||| |||| |||||| |||||||
Sbjct 1977 GATATGAGAAGGAAACCAAATATTGGTTTTGATGT 2011
> Ahg323329 jgi|Araly1|323329|fgenesh1_pm.C_scaffold_5000873
Length=1821
Score = 1768 bits (957), Expect = 0.0
Identities = 1536/1814 (85%), Gaps = 45/1814 (2%)
Strand=Plus/Plus
Query 46 TCATGCGTTTACAAGAACGGAGACGCGCCAGTGGAGGCGCGTGTGAAGGACCTTCTCTCT 105
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 22 TCATGCGTTTACAAGAACGGAGACGCGCCAGTGGAGGCGCGTGTAAAGGACCTTCTCTCT 81
Query 106 CGCATGACTTTGCCGGAGAAGATCGGTCAGATGACTCAAATCGAACGCAGAGTCGCTTCT 165
||||||||||||||||||||||| |||||||||||||| || |||||| |||||||||
Sbjct 82 CGCATGACTTTGCCGGAGAAGATTGGTCAGATGACTCAGATAGAACGCTCCGTCGCTTCT 141
Query 166 CCCTCC-GCCTTTACAGATTTCTT-CATCGGAAGTGTACTAAACGCTG-GA-GGTAGT-G 220
|| || | | ||||| ||| ||| |||||| ||||||| | | || | | || ||| |
Sbjct 142 CC-TCAAGTCATTACACATT-CTTTCATCGGCAGTGTAC-AGA-GCGGCGCCGGAAGTTG 197
Query 221 TACCGTTCGAGGACGCTAAGTCATCGGATTGGGCTGATATGATTGATGGTTTTCAGCGAT 280
||||||||| |||| || |||||||||||||| |||||||| || |||||||||| |
Sbjct 198 G-CCGTTCGAGAACGCCAAATCATCGGATTGGGCGGATATGATCGACAGTTTTCAGCGTT 256
Query 281 CAGCGTTAGCGTCGCGTTTGGGAATTCCAATTATCTATGGCACTGACGCTGTCCACGGCA 340
|||||||||||||||||||||||||||| || || || ||||||||||| || || ||||
Sbjct 257 CAGCGTTAGCGTCGCGTTTGGGAATTCCGATAATATACGGCACTGACGCCGTTCATGGCA 316
Query 341 ACAATAATGTCTACGGCGCCACTGTCTTCCCTCACAACATTGGCCTCGGAGCCACCAGAG 400
|||| || |||||||| |||||||||||||| ||||||||||| |||||||| |||||||
Sbjct 317 ACAACAACGTCTACGGTGCCACTGTCTTCCCCCACAACATTGGTCTCGGAGCTACCAGAG 376
Query 401 ACGCAGATTTGGTCAGAAGAATTGGAGCAGCAACTGCACTTGAAGTAAGAGCGAGCGGGG 460
|||| ||||| || ||||||||||| || ||||| |||||||||||||| || || || |
Sbjct 377 ACGCCGATTTAGTTAGAAGAATTGGTGCTGCAACAGCACTTGAAGTAAGGGCTAGTGGTG 436
Query 461 TTCATTGGGCATTTTCTCCTTGCGTGGCCGTTTTGAGAGATCCGAGGTGGGGAAGATGCT 520
|||| ||| ||||| ||||||| ||||| |||||| ||||||| ||||||||| ||||||
Sbjct 437 TTCACTGGACATTTGCTCCTTGTGTGGCTGTTTTGGGAGATCCAAGGTGGGGACGATGCT 496
Query 521 ATGAGAGTTATGGAGAAGATCCTGAACTTGTCTGTGAGATGACTTCTCTTGTCTCGGGCC 580
||||||||||||| |||| | || || |||| |||||||||| ||| ||| |||||||||
Sbjct 497 ATGAGAGTTATGGTGAAGCTGCTAAAATTGTTTGTGAGATGAGTTCGCTTATCTCGGGCC 556
Query 581 TACAAGGTGTGCCACCAGAAGAACACCCAAATGGTTATCCTTTTGTTGCAGGAAGAAACA 640
||||||| | |||||| ||||||||||| || ||||| |||||| |||||||||||||||
Sbjct 557 TACAAGGCGAGCCACCCGAAGAACACCCTAACGGTTACCCTTTTCTTGCAGGAAGAAACA 616
Query 641 ACGTCGTCGCGTGTG-TCAAACACTTTGTTGGAGATGGTGGTACTGACAAGGGCATAAAT 699
|||| |||||||||| | |||||||||||||||||||||||||| || |||||| |||
Sbjct 617 ACGTGGTCGCGTGTGCT-AAACACTTTGTTGGAGATGGTGGTACCGATAAGGGCTTAAGC 675
Query 700 GAAGGGAACACCATCGCTTCATATGAAGAATTAGAGAAGATACATATTCCTCCTTATCTG 759
|| ||||||||||| || ||||||||||| || ||||| || ||| || |||| |||||
Sbjct 676 GAGGGGAACACCATAGCATCATATGAAGACTTGGAGAAAATTCATGTTGCTCCCTATCTT 735
Query 760 AAGTGTCTTGCTCAGGGAGTTTCCACGGTTATGGCGTCTTACTCCAGTTGGAATGGAACT 819
|| ||| ||||||||||||| | || |||||||| |||| ||||||||||| | || |
Sbjct 736 AATTGTATTGCTCAGGGAGTGTGTACCGTTATGGCCTCTTTTTCCAGTTGGAACGAAAGT 795
Query 820 AGACTGCACGCCGACCGTTTTCTCTTGACAGAAATTCTAAAGGAAAAACTTGGTTTCAAG 879
||||| ||| ||||| ||| |||||||| ||| |||| ||| | ||||| ||||| |||
Sbjct 796 AGACTCCACTCCGACTATTTCCTCTTGACGGAAGTTCTCAAGCAGAAACTCGGTTTTAAG 855
Query 880 GGATTTCTAGTCTCAGACTGGGAAGGTTTGGAC-CGGCTTAGTGAGCCTCAGGGATCAAA 938
||||||||||| ||||||||||| |||||||| || |||| ||||| | || |||||
Sbjct 856 GGATTTCTAGTTTCAGACTGGGATGGTTTGGAGACGA-TTAGCGAGCCAGAAGGTTCAAA 914
Query 939 CTACCGCTA-CTGCATTAAAACTGCGG--TTAATGCTGGCATTGACATGGTTATGGTACC 995
|||||| || |||||| ||| || ||| |||||||||| || |||||||| ||||||||
Sbjct 915 CTACCG-TAACTGCATCAAA-CT-CGGGATTAATGCTGGGATCGACATGGTGATGGTACC 971
Query 996 ATTT-AAGTACGAACAGTTCATACAGGACATGACAGATCTGGTAGAGTCAGGGGAAATAC 1054
||| ||||||||||||||||||||||||||||||||||| || |||||||| |||||||
Sbjct 972 -TTTCAAGTACGAACAGTTCATACAGGACATGACAGATCTTGTGGAGTCAGGAGAAATAC 1030
Query 1055 CAATGGCTCGGATCAATGATGCTGTTGAAAGAATACTCAGAGTGAAATTTGTCGCTGGTC 1114
| ||||||||| |||||||||||||||| |||||||| |||||||| ||||| || ||||
Sbjct 1031 CGATGGCTCGGGTCAATGATGCTGTTGAGAGAATACTTAGAGTGAAGTTTGTTGCGGGTC 1090
Query 1115 TTTTTGGACATCCTCTCACAGATCGATCTTTGTTGCCTACTGTTGGTTGCAAGGAACATA 1174
| |||| ||||||| || | || |||||||||||| |||||||| |||||| |
Sbjct 1091 TCTTTGAACATCCTTTCTCGGACCGATCTTTGTTGGGAACTGTTGGCTGCAAG-A----- 1144
Query 1175 GAGAATTGGCGCAG-GAAGCAGTTAGAAAGTCGTTAGTTCTGCTAAAGAGTGGCAAAAAT 1233
||| | | | | | ||||| |||||||||||||||||| |||| |||| ||| ||||||
Sbjct 1145 GAGTA--G-CAC-GTGAAGCGGTTAGAAAGTCGTTAGTTTTGCTTAAGAATGGTAAAAAT 1200
Query 1234 GCTGATAAACCGTTTCTGCCACTAGATCGCAACGCTAAGAGGATTCTAGTCACTGGAACT 1293
||| ||| ||| |||||||||||||| || || || |||||||||||||| ||||| |
Sbjct 1201 GCTAATACACCATTTCTGCCACTAGACCGTAATGCAAAGAGGATTCTAGTTGTTGGAA-T 1259
Query 1294 -CACGCAGATGATCTTGGATATCAGTGCGGAGGATGGACAAAGACATGGT-TCGGTCTAA 1351
|| ||| | ||||||||| ||||||| |||||||||||||||||| | | |||| ||
Sbjct 1260 GCATGCAAACGATCTTGGAAATCAGTGTGGAGGATGGACAAAGACAAAATCT-GGTCAAA 1318
Query 1352 GCGGCAGGATCACAATTGGCACTACACTTTTGGACGCCATAAAAGAAGCAGTTGGAGACG 1411
||||||| |||||||||||||| || |||||||| |||||||||| |||||||||||||
Sbjct 1319 GCGGCAGAATCACAATTGGCACGACGCTTTTGGATGCCATAAAAGCAGCAGTTGGAGACA 1378
Query 1412 AAACCGAAGTAATCTATGAGAAAACTCCATCAAAGGAAACCTTAGCCTCAAGTGAAGGAT 1471
|||||||||| ||||| |||||||||||| |||| |||||||||||||| |||||||| |
Sbjct 1379 AAACCGAAGTGATCTACGAGAAAACTCCAACAAAAGAAACCTTAGCCTCGAGTGAAGGCT 1438
Query 1472 TCTCTTACGCCATTGTTGCAGTCGGGGAACCGCCCTATGCAGAGACGATGGGGGATAACT 1531
|||| ||||| || |||||||| ||||| || ||||| ||||||| || ||| |||||||
Sbjct 1439 TCTCCTACGCTATCGTTGCAGTGGGGGAGCCTCCCTACGCAGAGATGAAGGGCGATAACT 1498
Query 1532 CGGAACTCAGAATACCTTTTAATG-GTA-CTGACATTGTCACCGCAGTTGCAGAGATAAT 1589
||||||||| ||||||||| || | ||| | ||||| | ||||| |||||||||| |||
Sbjct 1499 CGGAACTCACAATACCTTTCAA-GAGTAACA-ACATTATAACCGCGGTTGCAGAGAAAAT 1556
Query 1590 CCCGACTCTGGTGATATTGAT-CTCAGGACGACCTGTGGTTTTGGAGCCGACGGTTCTTG 1648
||||||||| ||||| || || ||||||||| ||| ||||||||||||| ||||||||||
Sbjct 1557 CCCGACTCTAGTGATCTT-ATTCTCAGGACGTCCTATGGTTTTGGAGCCAACGGTTCTTG 1615
Query 1649 AAAAGACAGAGGCTCTGGTTGCTGCTTGGCTGCCTGGAACAGAAGGGCAAGGGGTGGCTG 1708
||||||| |||||| |||| ||||||||| | |||||||| |||||||||||| | |||
Sbjct 1616 AAAAGACCGAGGCTTTGGTCGCTGCTTGGTTCCCTGGAACCGAAGGGCAAGGGATTACTG 1675
Query 1709 ACGTTGTTTTTGGAGATTATGACTTCAAGGGGAAGTTGCCAGTGAGCTGGTTCAAACACG 1768
| || |||||||| ||||||||||||| |||||||| ||||||||||||||||||| ||
Sbjct 1676 ATGTCATTTTTGGAAATTATGACTTCAAAGGGAAGTTACCAGTGAGCTGGTTCAAACGCG 1735
Query 1769 TTGAGCATTTGCCACTAGATGCTCATGCCAATTCTTATGACCCATTGTTCCCGT-TTGGT 1827
| || || ||||| ||| | ||| ||||| |||| |||||||||||||| || | |||||
Sbjct 1736 TAGACCAGTTGCCGCTAAACGCTGATGCCGATTCGTATGACCCATTGTTTCC-TATTGGT 1794
Query 1828 TTCGGTCTCAATTC 1841
|||||||||| |||
Sbjct 1795 TTCGGTCTCACTTC 1808
> Ahg485082 jgi|Araly1|485082|fgenesh2_kg.5__1074__AT3G47050.1
Length=1905
Score = 1541 bits (834), Expect = 0.0
Identities = 1528/1860 (82%), Gaps = 60/1860 (3%)
Strand=Plus/Plus
Query 8 GAAGAAG-AAGAGTAAAGAAAATGGTCGTC---GAGGAGTCATCATGCGTTTACAAGAAC 63
|||| || ||||| ||||||||||| | | ||| |||| ||||| ||||||||||||
Sbjct 6 GAAG-AGAAAGAG-GAAGAAAATGGTTGACAATGAGAAGTCGTCATGTGTTTACAAGAAC 63
Query 64 GGAGACGCGCCAGTGGAGGCGCGTGTGAAGGACCTTCTCTCTCGCATGACTTTGCCGGAG 123
| |||||||||||||||||||||||||| |||||||||||||| |||||| |||| |||
Sbjct 64 CGCGACGCGCCAGTGGAGGCGCGTGTGAAAGACCTTCTCTCTCGGATGACTCTGCCTGAG 123
Query 124 AAGATCGGTCAGATGACTCAAATCGAACGCAGAGTCGCTTCTCCCTCCGCCTTTACAGAT 183
|| ||||| ||||||||| ||||||||||| || |||||| ||| | ||| ||||
Sbjct 124 AAAATCGGCCAGATGACTTTGATCGAACGCAGTGTGGCTTCTGAGGCCGTCATTAGAGAT 183
Query 184 TTCTTCATCGGAAGTGTACTAAACGCTGGAGGTAG-TGTACCGTTCGAGGACGCTAAGTC 242
|||| |||||| |||||||| ||||| | ||| || || || |||||||| || |||||
Sbjct 184 TTCTCCATCGGTAGTGTACTGAACGCCGCAGGAAGTTG-GCCATTCGAGGATGCAAAGTC 242
Query 243 ATCGGATTGGGCTGATATGATTGATGGTTTTCAGCGATCAGCGTTAGCGTCGCGTTTGGG 302
||| ||||||| |||||||| || || || |||||||||||||||| ||||||||||||
Sbjct 243 GTCGAATTGGGCGGATATGATCGACGGCTTCCAGCGATCAGCGTTAGAGTCGCGTTTGGG 302
Query 303 AATTCCAATTATCTATGGCACTGACGCTGTCCACGGCAACAATAATGTCTACGGCGCCAC 362
|||||| || || || |||| |||||| | || ||||||||| | ||||| ||||||||
Sbjct 303 AATTCCCATAATTTACGGCATTGACGCCATTCATGGCAACAATGACGTCTATGGCGCCAC 362
Query 363 TGTCTTCCCTCACAACATTGGCCTCGGAGCCACCAGAGACGCAGATTTGGTCAGAAGAAT 422
||||||| ||||||||||| ||||| ||||||||||| ||||||||||||| ||||||
Sbjct 363 CATCTTCCCCCACAACATTGGTCTCGGCGCCACCAGAGATGCAGATTTGGTCAAAAGAAT 422
Query 423 TGGAGCAGCAACTGCACTTGAAGTAAGAGCGAGCGGGGTTCATTGGGCATTTTCTCCTTG 482
|||||| ||||| ||||||||||| || |||||||| ||||| ||| | ||| |||| ||
Sbjct 423 TGGAGCTGCAACAGCACTTGAAGTTAGGGCGAGCGGTGTTCACTGGTCGTTTGCTCCATG 482
Query 483 CGTGGCCGTTTTGAGAGATCCGAGGTGGGGAAGATGCTATGAGAGTTATGGAGAAGATCC 542
||| || || ||| ||||||||| |||||||||||||||||||||||||| |||| | |
Sbjct 483 CGTCGCTGTGGTGAAAGATCCGAGATGGGGAAGATGCTATGAGAGTTATGGTGAAGTTGC 542
Query 543 T-GAACTTGTCTGTGAGATGACTTCTCTTGTCTCGGGCCTACAAGGTGTGCCA-CCAGAA 600
| || |||| | |||||||||||| |||||||| || |||||||| | |||| ||| ||
Sbjct 543 TCCAA-TTGTTTCTGAGATGACTTCACTTGTCTCAGGTCTACAAGGCGAGCCATCCA-AA 600
Query 601 GAACACCCAAATGGTTATCCTTTTGTTGCAGGAAGAAACAACGTCGTCGCGTGTGTCAAA 660
|||||| | | ||||| |||||| |||||||||||| ||||| || ||||||| |||
Sbjct 601 GAACACACTAGCGGTTACCCTTTTCATGCAGGAAGAAAAAACGTGGTTGCGTGTGCCAAG 660
Query 661 CACTTTGTTGGAGATGGTGGTACTGACAAGGGCATAAATGAAGGGAACACCATCGCTT-C 719
|||||||||||||| |||||||| || |||| |||||||||||| |||||||| || |
Sbjct 661 CACTTTGTTGGAGACGGTGGTACCGATAAGGCCATAAATGAAGGAAACACCAT--TTTGC 718
Query 720 -ATATGAAGAATTAGAGAAGATACATATTCCTCCTTATCTGAAGTGTCTTGCTCAGGGAG 778
|||||||| || |||| || ||| ||| |||| ||| ||| ||| || |||| ||||
Sbjct 719 GGTATGAAGACTTGGAGAGGAAACACATTGCTCCCTATAAGAAATGTATTTCTCAAGGAG 778
Query 779 TTTCCACGGTTATGG-CGTCTTACTCCAGTTGGAATGGA-ACTAGACTGCACGCCGACCG 836
| || || ||||||| | |||||||| |||||||| ||| | || ||| ||| || ||
Sbjct 779 TCTCTACCGTTATGGTC-TCTTACTCTAGTTGGAACGGAGA-TAAACTCCACTCCCACTA 836
Query 837 TTTTCTCTTGACAGAAATTCT-AAAGGAAAAACTTGGTTTCAAGGGATTTCTAGTCTCAG 895
||| ||||| || ||| |||| ||| ||||||| ||||||| ||||| | |||||||||
Sbjct 837 TTTCCTCTTAACGGAAGTTCTCAAA-CAAAAACTCGGTTTCAGGGGATATATAGTCTCAG 895
Query 896 ACTGGGAAGGTTTGGACCGGCTTAGTGAGCCTC-AGGGATCAAACTACCGCTACTGCATT 954
||||||||||||||||||||||||| || || | ||| |||||||||||| ||||| |
Sbjct 896 ACTGGGAAGGTTTGGACCGGCTTAGCGACCCACCAGGT-TCAAACTACCGCAACTGCGTC 954
Query 955 AAAACTGCGG-TTAATGCTGGCATTGACATGGTTATGGTACCATTT-AAGTACGAACAGT 1012
|||| || || |||||||||| || || ||||| |||||||| ||| ||||| ||| |||
Sbjct 955 AAAA-TGGGGATTAATGCTGGAATCGATATGGTGATGGTACC-TTTCAAGTATGAAAAGT 1012
Query 1013 TCATACAGGACATGACAGATCTGGTAGAGTCAGGGGAAATACCAATGGCTCG-GATCAAT 1071
||||| | ||| ||| ||||||||| |||||||||||| || |||||||| | | | |
Sbjct 1013 TCATAAACGACCTGATAGATCTGGTGGAGTCAGGGGAAGTATTGATGGCTCGTGTTGA-T 1071
Query 1072 GATGCTGTTGAAAGAATACTCAGAGTGAAATTTGTCGCTGGTCTTTTTGGACATCCTCTC 1131
|| |||||||||||||||||||||||||| ||||| || || || || | | |||||||
Sbjct 1072 GACGCTGTTGAAAGAATACTCAGAGTGAAGTTTGTTGCAGGACTCTTCGAATTTCCTCTC 1131
Query 1132 ACAGATCGATCTTTGTTGCCTACTGTTGGTTGCAAGGAACATAGAGAATTGGCGCAG-GA 1190
||||||||||| ||||| |||| |||||||||||||||||||||||||||||||| | ||
Sbjct 1132 ACAGATCGATCATTGTTACCTATTGTTGGTTGCAAGGAACATAGAGAATTGGCGC-GTGA 1190
Query 1191 AGCAGTTAGAAAGTCGTTAGTTCTGCTAAAGAGTGGCAAAAATGCTGATAAACCGTTTCT 1250
||| |||||||||||| ||||||||||||||| |||||| ||| || || |||||
Sbjct 1191 AGCTGTTAGAAAGTCGCTAGTTCTGCTAAAGAACGGCAAATATG--GAGAA----TTTCT 1244
Query 1251 GCCACTAGATCGCAACGCTAAGAGGATTCTAGTCACTGGAACTCACGCAGATGATCTTGG 1310
|||| || || |||| || |||| |||||||| |||||| || ||||||||||||||
Sbjct 1245 GCCATTAAATTGCAATGCCGAGAGAATTCTAGTGGTTGGAACGCATGCAGATGATCTTGG 1304
Query 1311 ATATCAGTGCGGAGGATGGACAAAGACA-TGGT-TCGGTCTAAGCGGCAGGATCACA-AT 1367
|||||| ||||| ||||||||||||||| || | | |||| |||||| ||||||||| ||
Sbjct 1305 ATATCAATGCGGTGGATGGACAAAGACAATG-TAT-GGTCAAAGCGGAAGGATCACAGAT 1362
Query 1368 TGGCACTACACTTTTGGACGCCATAAAAGAAGCAGTTGGAGACGAAACCGAAGTAATCTA 1427
||||| || ||||| || || ||||||| |||||||||||| |||||||||| |||||
Sbjct 1363 -GGCACAACGCTTTTAGATGCAATAAAAGCGGCAGTTGGAGACAAAACCGAAGTGATCTA 1421
Query 1428 TGAGAAAACTCCATCAAAGGAAACCTTAGCCTCAAG-TGA-AGGATTCTCTTACGCCATT 1485
|||||||| ||||||| ||||||||||||||||| | | | || ||| ||||| || |||
Sbjct 1422 TGAGAAAAATCCATCAGAGGAAACCTTAGCCTCAGGAT-ATAG-ATTTTCTTATGCAATT 1479
Query 1486 GTTGCAGTCGGGGAACCGCCCTATGCAGAGACGATGGGGGATAACTCGGAACTCAGAATA 1545
||||| || |||||| | ||||||| |||||| |||||||||||||| ||||||| ||||
Sbjct 1480 GTTGCGGTGGGGGAATCACCCTATGTAGAGACTATGGGGGATAACTCAGAACTCACAATA 1539
Query 1546 CCTTTTAATGGTA-CTGACATTGTCACCGCAGTTGCAGAGATAATCCCGACTCTGGTGAT 1604
|||||||| |||| | || ||| | ||||| |||||||||| |||||||||||| |||||
Sbjct 1540 CCTTTTAACGGTAGC-GAGATTATAACCGCGGTTGCAGAGAAAATCCCGACTCTAGTGAT 1598
Query 1605 ATTGATCTCAGGACGACCTGTGGTT-TTGGAGCCG-ACGGTTCTTGAAAAGACAGAGGCT 1662
||| |||||||||| ||| ||||| ||| ||||| | | ||||||||||| ||||||||
Sbjct 1599 CTTGTTCTCAGGACGGCCTATGGTTCTTG-AGCCGCAAG-TTCTTGAAAAGGCAGAGGCT 1656
Query 1663 CTGGTTGCTGCTTGGCTGCCTGGAACAGAAGGGCAAGGGGTGGCTGACGTTGTTTTTGGA 1722
||||| ||||||||||||||||| || ||||| |||||| | ||||| || |||| |||
Sbjct 1657 CTGGTCGCTGCTTGGCTGCCTGGTACTGAAGGACAAGGGATTGCTGATGTAATTTTCGGA 1716
Query 1723 GATTATGACTTCA-AGGGGAAGTTGCCAGTGAGCTGGTTCAAACACGTTGAGCATTTGCC 1781
|||||||| ||| |||| ||||| |||| |||||||||||||| || || || |||||
Sbjct 1717 GATTATGAGTTCCGAGGG-AAGTTACCAGCGAGCTGGTTCAAACGTGTAGACCAGTTGCC 1775
Query 1782 ACTAGATGCTCA-TGCCAATTCTTATGACCCATTGTTCCCGT-TTGGTTTCGGTCTCAAT 1839
|| || | | | | ||| ||| ||||||||| || | ||||||| ||||| |||
Sbjct 1776 GCTTGACATTGAAT-CAAATGGGTATCTCCCATTGTTTCC-TCTTGGTTTTGGTCTGAAT 1833
> Ahg485080 jgi|Araly1|485080|fgenesh2_kg.5__1072__AT3G47040.1
Length=1791
Score = 918 bits (497), Expect = 0.0
Identities = 825/980 (84%), Gaps = 36/980 (4%)
Strand=Plus/Plus
Query 877 AAGGGATTTCT-AGTCTCAGACTGGGAAGGTTTGGACCGGCTTAGTGAGCC--TCAGGGA 933
||||||||| | | | || |||||||||| |||||| |||||||||||||| || ||
Sbjct 781 AAGGGATTTGTCA-TTTCTGACTGGGAAGCTTTGGAACGGCTTAGTGAGCCATTC--GGT 837
Query 934 TCAAACTACCGCTACTGCATTAAAA-CTGCGGTTAATGCTGGCA-TTGACATGGTTATGG 991
|| ||||||||| ||||| | |||| || | ||||||||||| | | |||||||| ||||
Sbjct 838 TCTAACTACCGCAACTGCGTGAAAACCT-CAGTTAATGCTGG-AGTCGACATGGTGATGG 895
Query 992 TACCATTT-AAGTACGAACAGTTCATACAGGACATGACAGATCTGGTAGAGTCAGGGGAA 1050
| || ||| ||||| |||||||| ||| ||||| | ||||||||||| ||||||||||||
Sbjct 896 TGCC-TTTCAAGTATGAACAGTTTATAAAGGACCTCACAGATCTGGTGGAGTCAGGGGAA 954
Query 1051 ATACCAATGGCTCGGATCA-ATGATGCTGTTGAAAGAATACTCAGAGTGAAATTTGTCGC 1109
|| ||||| ||||||| | ||||||||||||| |||||||| |||||||| ||||| ||
Sbjct 955 GTAACAATGTCTCGGAT-AGATGATGCTGTTGAGAGAATACTTAGAGTGAAGTTTGTTGC 1013
Query 1110 TGGTCTTTTTGGACATCCTCTCACAGATCGATCTTTGTTGCCTACTGTTGGTTGCAAGGA 1169
|||||||||| | ||||||| || || |||||||| ||| ||||||||| ||||||||
Sbjct 1014 GGGTCTTTTTGAAAATCCTCTGACGGACCGATCTTTATTGGGTACTGTTGGCTGCAAGGA 1073
Query 1170 ACATAGAGAATTGGCGCAG-GAAGCAGTTAGAAAGTCGTTAGTTCTGCTAAAGAGTGGCA 1228
|||||||||| | || | | ||| | ||||||||||||||||| || || |||| | |
Sbjct 1074 ACATAGAGAACTAGCTC-GTGAATCGGTTAGAAAGTCGTTAGTGCTCCTGAAGAACCGAA 1132
Query 1229 AAAATGCTGATAAACCGTTTCTGCCACTAGATCGCAACGCTAAGAGGATTCTAGTCACTG 1288
||||| |||| || || ||||||||||||||||| ||||| ||||| |||||||||||||
Sbjct 1133 AAAATTCTGAGAAGCCATTTCTGCCACTAGATCGTAACGCCAAGAGAATTCTAGTCACTG 1192
Query 1289 GAACTCACGCAGATGATCTTGGATATCAGTGCGGAGGATGGACAAAGACATGGTTCGGTC 1348
|||| ||| | || |||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 1193 GAACGCACACGGACGATCTTGGATATCAGTGCGGGGGATGGACAAAGGCATGGTTCGGTC 1252
Query 1349 TAAGCGGCAGGATCACAATTGGCACTACACTTTTGGACGCCATAAAAGAAGCAGTTGGAG 1408
||||||||||||||||||| ||||| || |||||||||||||| ||||||||||||||||
Sbjct 1253 TAAGCGGCAGGATCACAATCGGCACAACGCTTTTGGACGCCATTAAAGAAGCAGTTGGAG 1312
Query 1409 ACGAA-ACCGAAGTAATCTATGAGAAAACTCCAT-CAAAGGAAACCTTAGCCTCAAGTG- 1465
|| || || ||||| ||||| ||||| ||||| | | || ||||| |||||||| |||
Sbjct 1313 AC-AAGACTGAAGTGATCTACGAGAAGACTCCTTCCGAA-GAAACTTTAGCCTC-GGTGC 1369
Query 1466 AAGGATTCTCTTACGCCATTGTTGCAGTCGGGGAACCGCCCTATGCAGAGACGA-TGGGG 1524
|||| ||||| ||||||||||||||||| |||||| | ||||| |||||||| | ||||
Sbjct 1370 AAGGCTTCTCCTACGCCATTGTTGCAGTGGGGGAAACTCCCTACGCAGAGAC-ATTGGGA 1428
Query 1525 GATAACTCGGAACTCAGAATACCTTTTAATGGT-ACTGACATTGTCACCGCAGTTGCAGA 1583
|||||||||||||||| |||||| || || ||| || |||||||| ||||| ||||||||
Sbjct 1429 GATAACTCGGAACTCACAATACCCTTAAACGGTAAC-GACATTGTAACCGCGGTTGCAGA 1487
Query 1584 GATAATCCCGACTCT-GGTGATATTGATCTCAGGACGACCTGTGGTT-TTGGAGCCGACG 1641
|| ||| |||||||| | || | ||| |||| ||||| ||| ||||| || |||||| ||
Sbjct 1488 GAAAATTCCGACTCTAGTTG-TCTTGTTCTCTGGACGGCCTATGGTTCTT-GAGCCGCCG 1545
Query 1642 GTTCTTGAAAAGACAGAGGCTCTGGTTGCTGCTTGGCTGCCTGGAACAGAAGGGCAAGGG 1701
|||||||||||| | ||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1546 GTTCTTGAAAAGGCTGAGGCTCTGGTCGCTGCTTGGCTGCCTGGAACCGAAGGGCAAGGA 1605
Query 1702 GTG-GCTGACGTTGTTTTTGGAGATTATGACTTCAAGGGGAAGTTGCCAGTGAGCTGGTT 1760
|| | ||| || ||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 1606 ATGAG-TGATGTCATTTTTGGAGATTATGACTTTGAGGGGAAGTTACCAGTGAGCTGGTT 1664
Query 1761 CAAACACGTTGAGCATTTGCCACTAGAT-GCTCATGCCAATTCTTATGACCCATTGTTCC 1819
|||||||||||| || ||||| || | ||| | |||||||| ||||| |||||||| |
Sbjct 1665 CAAACACGTTGACCAGTTGCCGTTA-ACCGCTGAAGCCAATTCGTATGATCCATTGTTTC 1723
Query 1820 CGT-TTGGTTTCGGTCTCAA 1838
| | ||||||| ||||||||
Sbjct 1724 C-TCTTGGTTTTGGTCTCAA 1742
> Ahg485078 jgi|Araly1|485078|fgenesh2_kg.5__1070__AT3G46990.1
Length=1916
Score = 165 bits (89), Expect = 1e-39
Identities = 102/108 (94%), Gaps = 2/108 (2%)
Strand=Plus/Minus
Query 1913 CACGCAATGTCGTATTTGTATAAGCAAACCATGCA-AAAACAATGTATTGTTGATGTGCT 1971
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1916 CACGCAATGTCGTATTTGTATAAGCAAACCATG-AGAAAACAATGTATTGTTGATGTGCT 1858
Query 1972 TTTATGAGGAAAATATATGAGAAGGAAAACAAACATTGGTGTTGATGT 2019
||||||||||||| |||||||||||||| |||| |||||| |||||||
Sbjct 1857 TTTATGAGGAAAAGATATGAGAAGGAAACCAAATATTGGTTTTGATGT 1810
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75913858285
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5