BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G47010.1
Length=1952
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323329 jgi|Araly1|323329|fgenesh1_pm.C_scaffold_5000873 2636 0.0
Ahg485079 jgi|Araly1|485079|fgenesh2_kg.5__1071__AT3G47000.1 1832 0.0
Ahg485082 jgi|Araly1|485082|fgenesh2_kg.5__1074__AT3G47050.1 1596 0.0
Ahg485080 jgi|Araly1|485080|fgenesh2_kg.5__1072__AT3G47040.1 970 0.0
> Ahg323329 jgi|Araly1|323329|fgenesh1_pm.C_scaffold_5000873
Length=1821
Score = 2636 bits (1427), Expect = 0.0
Identities = 1701/1833 (93%), Gaps = 19/1833 (1%)
Strand=Plus/Plus
Query 14 ATGGCAGAGACTGAGGAGTCTTCATGGGTTTACAAGAACCGAGACGCGCCGGTGGAGGCG 73
||| |||||||||| || |||||||| |||||||||||| |||||||||| |||||||||
Sbjct 1 ATGCCAGAGACTGATGATTCTTCATGCGTTTACAAGAACGGAGACGCGCCAGTGGAGGCG 60
Query 74 CGTGTGAAGGACCTTCTCTCTCGCATGACTTTGCCGGAGAAGATTGGTCAGATGACTCAG 133
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CGTGTAAAGGACCTTCTCTCTCGCATGACTTTGCCGGAGAAGATTGGTCAGATGACTCAG 120
Query 134 ATAGAACGCTCCGTCGCTTCTCCTCAAGTCATTACTA-ATTCTTTCATCGGCAGTGTACA 192
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 121 ATAGAACGCTCCGTCGCTTCTCCTCAAGTCATTAC-ACATTCTTTCATCGGCAGTGTACA 179
Query 193 GAGCGGCGCCGGAAGTTGGCCGTTGGAGGATGCTAAGTCGTCGGATTGGGCTGATATGAT 252
|||||||||||||||||||||||| ||| | || || || ||||||||||| ||||||||
Sbjct 180 GAGCGGCGCCGGAAGTTGGCCGTTCGAGAACGCCAAATCATCGGATTGGGCGGATATGAT 239
Query 253 CGACGGTTTTCAGCGTTCAGCGTTAGCGTCGCGTTTGGGAATTCCAATAATCTACGGCAC 312
|||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 240 CGACAGTTTTCAGCGTTCAGCGTTAGCGTCGCGTTTGGGAATTCCGATAATATACGGCAC 299
Query 313 TGACGCCGTTCACGGCAACAATAACGTCTACGGCGCCACCGTCTTCCCCCACAACATTGG 372
|||||||||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||
Sbjct 300 TGACGCCGTTCATGGCAACAACAACGTCTACGGTGCCACTGTCTTCCCCCACAACATTGG 359
Query 373 ACTCGGCGCCACCAGAGACGCAGATTTGGTCAAAAGAATTGGTGCTGCAACAGCACTTGA 432
||||| || ||||||||||| ||||| || | |||||||||||||||||||||||||||
Sbjct 360 TCTCGGAGCTACCAGAGACGCCGATTTAGTTAGAAGAATTGGTGCTGCAACAGCACTTGA 419
Query 433 AATAAGGGCTAGTGGCGTTCACTGGACGTTTGCTCCTTGTGTGGCCGTTTTGGGAGATCC 492
| ||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 420 AGTAAGGGCTAGTGGTGTTCACTGGACATTTGCTCCTTGTGTGGCTGTTTTGGGAGATCC 479
Query 493 GAGGTGGGGACGATGCTATGAAAGTTATAGTGAAGCTGCTAAAATTGTATGTGAGATGAG 552
|||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||
Sbjct 480 AAGGTGGGGACGATGCTATGAGAGTTATGGTGAAGCTGCTAAAATTGTTTGTGAGATGAG 539
Query 553 TTTGCTTATCTCGGGCCTACAAGGCGAGCCACCTGAAGAACACCCTTACGGTTACCCTTT 612
|| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 540 TTCGCTTATCTCGGGCCTACAAGGCGAGCCACCCGAAGAACACCCTAACGGTTACCCTTT 599
Query 613 TCTTGCAGGAAGAAACAACGTGATCGCGTGTGCTAAACACTTTGTTGGAGATGGTGGTAC 672
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 600 TCTTGCAGGAAGAAACAACGTGGTCGCGTGTGCTAAACACTTTGTTGGAGATGGTGGTAC 659
Query 673 TGAGAAAGGCTTAAGCGAAGGGAACACTATAACATCATATGAAGACTTGGAGAAAATACA 732
|| || ||||||||||| |||||||| ||| ||||||||||||||||||||||||| ||
Sbjct 660 CGATAAGGGCTTAAGCGAGGGGAACACCATAGCATCATATGAAGACTTGGAGAAAATTCA 719
Query 733 TGTTGCTCCCTATCTTAATTGTATTGCTCAGGGAGTGTCG-ACCGTTATGGCCTCATTTT 791
|||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||
Sbjct 720 TGTTGCTCCCTATCTTAATTGTATTGCTCAGGGAGTGT-GTACCGTTATGGCCTCTTTTT 778
Query 792 CCAGTTGGAATGGAAGTAGACTCCACTCCGACTATTTCCTTTTGACTGAAGTTCTTAAAC 851
|||||||||| | ||||||||||||||||||||||||||| ||||| |||||||| || |
Sbjct 779 CCAGTTGGAACGAAAGTAGACTCCACTCCGACTATTTCCTCTTGACGGAAGTTCTCAAGC 838
Query 852 AGAAACTCGGTTTCAAGGGATTTCTAGTTTCAGACTGGGATGGTTTGGAGACGATAAGCG 911
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 839 AGAAACTCGGTTTTAAGGGATTTCTAGTTTCAGACTGGGATGGTTTGGAGACGATTAGCG 898
Query 912 AGCCAGAAGGTTCCAACTACCGTAACTGCGTCAAACTCGGGATTAATGCTGGAATCGACA 971
||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 899 AGCCAGAAGGTTCAAACTACCGTAACTGCATCAAACTCGGGATTAATGCTGGGATCGACA 958
Query 972 TGGTGATGGTGCCTTTCAAGTACGAACAGTTCATACAGGACATGACAGAT-TTGGTGGAG 1030
|||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 959 TGGTGATGGTACCTTTCAAGTACGAACAGTTCATACAGGACATGACAGATCTTG-TGGAG 1017
Query 1031 TCAGGGGAAATACCAATGGCTCGGGTCAATGATGCTGTTGAAAGAATACTAAGAGTGAAG 1090
||||| |||||||| |||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1018 TCAGGAGAAATACCGATGGCTCGGGTCAATGATGCTGTTGAGAGAATACTTAGAGTGAAG 1077
Query 1091 TTTGTTGCTGGTCTCTTTGAACATCCTCT-TGCGGACCGATCTTTGTTGGGAACTGTTGG 1149
|||||||| |||||||||||||||||| | | ||||||||||||||||||||||||||||
Sbjct 1078 TTTGTTGCGGGTCTCTTTGAACATCCTTTCT-CGGACCGATCTTTGTTGGGAACTGTTGG 1136
Query 1150 CTGCAAGGAACATAGAGAAGTGGCACGTGAAGCGGTTAGAAAGTCATTAGTGTTGCTGAA 1209
||||||| | ||| || |||||||||||||||||||||| ||||| ||||| ||
Sbjct 1137 CTGCAAG-A-----GAGTAG---CACGTGAAGCGGTTAGAAAGTCGTTAGTTTTGCTTAA 1187
Query 1210 GAATGGTAAAAATGCTGATACACCATTTCTACCACTAGACCGCAATGCCAAGAGGATTCT 1269
|||||||||||||||| ||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct 1188 GAATGGTAAAAATGCTAATACACCATTTCTGCCACTAGACCGTAATGCAAAGAGGATTCT 1247
Query 1270 AGTGGTTGGAATGCATGCAAACGATCTTGGAAATCAGTGTGGAGGATGGACAAAGATAAA 1329
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1248 AGTTGTTGGAATGCATGCAAACGATCTTGGAAATCAGTGTGGAGGATGGACAAAGACAAA 1307
Query 1330 ATCCGGTCAAAGCGGCAGAATCACAATTGGCACGACGCTTTTGGATTCAATAAAAGCAGC 1389
||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1308 ATCTGGTCAAAGCGGCAGAATCACAATTGGCACGACGCTTTTGGATGCCATAAAAGCAGC 1367
Query 1390 AGTTGGAGACAAAACTGAAGTCATCTTCGAGAAAACTCCAACAAAGGAAACCTTAGCATC 1449
||||||||||||||| ||||| |||| |||||||||||||||||| ||||||||||| ||
Sbjct 1368 AGTTGGAGACAAAACCGAAGTGATCTACGAGAAAACTCCAACAAAAGAAACCTTAGCCTC 1427
Query 1450 AAGTGATGGCTTCTCATACGCCATTGTTGCAGTGGGGGAACCTCCATACGCAGAAATGAA 1509
||||| |||||||| ||||| || |||||||||||||| ||||| |||||||| |||||
Sbjct 1428 GAGTGAAGGCTTCTCCTACGCTATCGTTGCAGTGGGGGAGCCTCCCTACGCAGAGATGAA 1487
Query 1510 GGGAGATAACTCGGAACTCACTATACCTTTCAATG-GTAACAACATTATAACCGCGGTTG 1568
||| ||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||
Sbjct 1488 GGGCGATAACTCGGAACTCACAATACCTTTCAA-GAGTAACAACATTATAACCGCGGTTG 1546
Query 1569 CAGAGAAAATCCCGACTCTAGTGATTTTGTTCTCAGGACGTCCAATGGTTTTAGAGCCAA 1628
||||||||||||||||||||||||| || |||||||||||||| |||||||| |||||||
Sbjct 1547 CAGAGAAAATCCCGACTCTAGTGATCTTATTCTCAGGACGTCCTATGGTTTTGGAGCCAA 1606
Query 1629 CGGTTCTTGAAAAGACTGAAGCTTTGGTCGCTGCTTGGTTCCCTGGAACTGAAGGGCAAG 1688
|||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1607 CGGTTCTTGAAAAGACCGAGGCTTTGGTCGCTGCTTGGTTCCCTGGAACCGAAGGGCAAG 1666
Query 1689 GGATGAGTGATGTGATTTTCGGAGATTATGACTTCAAAGGGAAGTTACCAGTGAGCTGGT 1748
|||| | |||||| ||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 1667 GGATTACTGATGTCATTTTTGGAAATTATGACTTCAAAGGGAAGTTACCAGTGAGCTGGT 1726
Query 1749 TCAAACGCGTTGACCAGTTGCCGTTAAACGCTGAAGCAAATTCGTATGACCCATTGTTTC 1808
|||||||||| |||||||||||| |||||||||| || |||||||||||||||||||||
Sbjct 1727 TCAAACGCGTAGACCAGTTGCCGCTAAACGCTGATGCCGATTCGTATGACCCATTGTTTC 1786
Query 1809 CTCTTGGTTTCGGTCTCACTTCCAATTTCGGTT 1841
|| |||||||||||||||||||||||| |||||
Sbjct 1787 CTATTGGTTTCGGTCTCACTTCCAATTCCGGTT 1819
> Ahg485079 jgi|Araly1|485079|fgenesh2_kg.5__1071__AT3G47000.1
Length=2011
Score = 1832 bits (992), Expect = 0.0
Identities = 1555/1826 (85%), Gaps = 42/1826 (2%)
Strand=Plus/Plus
Query 26 GAGGAGTCTTCATGGGTTTACAAGAACCGAGACGCGCCGGTGGAGGCGCGTGTGAAGGAC 85
|||||||| ||||| ||||||||||||| ||||||||| ||||||| |||||| ||||||
Sbjct 29 GAGGAGTCATCATGCGTTTACAAGAACCAAGACGCGCCAGTGGAGGTGCGTGTAAAGGAC 88
Query 86 CTTCTCTCTCGCATGACTTTGCCGGAGAAGATTGGTCAGATGACTCAGATAGAACGCTCC 145
|||||||||||||||||||||||||||||||| |||||||||||||| || ||||||
Sbjct 89 CTTCTCTCTCGCATGACTTTGCCGGAGAAGATCGGTCAGATGACTCAAATCGAACGCAGA 148
Query 146 GTCGCTTCTC-CTCAAGTCATTACTA-A-TTCTTTCATCGGCAGTGTA-CAGAGCGGCGC 201
|||||||||| | | | | |||| | | ||| |||||||| |||||| | | || ||
Sbjct 149 GTCGCTTCTCACGC-CGCCTTTAC-AGATTTC-TTCATCGGAAGTGTATTA-AACGCCGG 204
Query 202 CGGAAGTTG-GCCGTTGGAGGATGCTAAGTCGTCGGATTGGGCTGATATGATCGACGGTT 260
|| || || |||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 205 AGGGAG-TGTGCCGTTTGAGGATGCTAAGTCGTCGGATTGGGCTGATATGATCGACAGTT 263
Query 261 TTCAGCGTTCAGCGTTAGCGTCGCGTTTGGGAATTCCAATAATCTACGGCACTGACGCCG 320
|||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
Sbjct 264 TTCAGCGTTCAGCGTTAGCGTCGCGTTTGGGAATTCCAATCATCTACGGTACTGACGCTG 323
Query 321 TTCACGGCAACAATAACGTCTACGGCGCCACCGTCTTCCCCCACAACATTGGACTCGGCG 380
| ||||| ||||| || ||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 324 TCCACGGGAACAACAATGTCTACGGCGCCACCGTCTTCCCCCACAACATTGGCCTCGGAG 383
Query 381 CCACCAGAGACGCAGATTTGGTCAA-AAGAATTGGTGCTGCAACAGCACTTGAAATAAGG 439
|||||||||||||||||||||| || ||||||||| |||||||| ||||||||||||||
Sbjct 384 CCACCAGAGACGCAGATTTGGT-AAGAAGAATTGGAGCTGCAACTGCACTTGAAATAAGA 442
Query 440 GCTAGTGGCGTTCACTGGACGTTTGCTCCTTGTGTGGCCGTTTTGGGAGATCCGAGGTGG 499
|| || || | ||| ||| ||||||||||||| |||||||||||| |||||||||| |||
Sbjct 443 GCGAGCGGGGCTCATTGGGCGTTTGCTCCTTGCGTGGCCGTTTTGAGAGATCCGAGATGG 502
Query 500 GGACGATGCTATGAAAGTTATAGTGAAGCTGCTAAAATTGTATGTGAGATGAGTTTGCTT 559
|||||||||||||| |||||| | |||| | || | |||| |||||||||| || ||||
Sbjct 503 GGACGATGCTATGAGAGTTATGGAGAAGATCCTGGACTTGTCTGTGAGATGACTTCGCTT 562
Query 560 ATCTCGGGCCTACAAGGCGAGCCACCTGAAGAACACCCTTACGGTTACCCTTTTCTTGCA 619
||||||| |||||||||| |||||| ||||||||||| | ||||| |||||| ||||
Sbjct 563 GTCTCGGGACTACAAGGCGTGCCACCAGAAGAACACCCAAATGGTTATCCTTTTGTTGCG 622
Query 620 GGAAGAAACAACGT-GATCGCGTGTG-CTAAACACTTTGTTGGAGATGGTGGTACTGAGA 677
||||||||||| || | ||||||||| | |||||||||||||||||||||||||| || |
Sbjct 623 GGAAGAAACAATGTCG-TCGCGTGTGTC-AAACACTTTGTTGGAGATGGTGGTACCGACA 680
Query 678 AAGGCTTAAGCGAAGGGAACACTATAACATCATATGAAGACTTGGAGAAAATACATGTTG 737
| ||| ||| |||||||||||| || | |||||||||||||| ||||| ||||| ||
Sbjct 681 AGGGCGTAAACGAAGGGAACACCATTGCGTCATATGAAGACTTAGAGAAGATACACATTC 740
Query 738 CTCCCTATCTTAATTGTATTGCTCAGGGAGTGTCGACCGTTATGGCCTCATTT-TCCAGT 796
|||| ||||| || ||| ||||||||||||| || || |||||||| || || ||||||
Sbjct 741 CTCCATATCTGAACTGTCTTGCTCAGGGAGTCTCCACGGTTATGGCATC-TTACTCCAGT 799
Query 797 TGGAATGGAAGTAGACTCCACTCCGACTATTTCCTTTTGACTGAAGTTCTTAAAC-AGAA 855
|||||||||| |||||| ||| | |||| ||| || ||||| ||| |||| ||| | ||
Sbjct 800 TGGAATGGAACTAGACTTCACGCTGACTGTTTTCTCTTGACAGAAATTCT-AAAGGAAAA 858
Query 856 ACTCGGTTTCAAGGGATTTCTAGTTTCAGACTGGGATGGTTTGGAGACGA-TAAGCGAGC 914
|||||||||||||||||||||||| ||||||||||| |||||||| || | || ||||
Sbjct 859 ACTCGGTTTCAAGGGATTTCTAGTCTCAGACTGGGAAGGTTTGGAC-CGGCTTAGTGAGC 917
Query 915 CAGAAGGTTCCAACTACCGTAACTGCGTCAAA-CT-CGGGATTAATGCTGGAATCGACAT 972
| | || || ||||||||| ||||| | ||| || ||| |||||||||| || |||||
Sbjct 918 CTCAGGGATCAAACTACCGTTACTGCATTAAAACTGCGG--TTAATGCTGGCATTGACAT 975
Query 973 GGTGATGGTGCCTTTCAAGTACGAACAGTTCATACAGGACATGACAGATTTGGTGGAGTC 1032
||| ||||| || |||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 976 GGTTATGGTACCATTCAAGTACGAACAGTTCATACAGGACATGACAGATCTGGTAGAGTC 1035
Query 1033 AGGGGAAATA-CCAATGGCTCGGGTCAATGATGCTGTTGAAAGAATACTAAGAGTGAAGT 1091
|||||||||| ||| ||| |||||||||||||||||||||||||||| | |||||||| |
Sbjct 1036 AGGGGAAATATCCA-TGGATCGGGTCAATGATGCTGTTGAAAGAATAGTCAGAGTGAAAT 1094
Query 1092 TTGTTGCTGGTCTCTTTGAACATCCTCTTGCGGACCGATCTTTGTTGGGAACTGTTGGCT 1151
|||| ||||||||||| ||| ||||||| | || ||||| ||||| | |||||| |
Sbjct 1095 TTGTCGCTGGTCTCTTCGAATATCCTCTCACAGATCGATCATTGTTACCTATTGTTGGTT 1154
Query 1152 GCAAGGAACATAGAGAAGTGGCAC-GTGAAGCGGTTAGAAAGTCATTAGTGT-TGCTGAA 1209
||||||||||||||||| |||| | | ||||| ||||||||||| ||||| | |||| ||
Sbjct 1155 GCAAGGAACATAGAGAATTGGCGCAG-GAAGCAGTTAGAAAGTCGTTAGT-TCTGCTAAA 1212
Query 1210 GAATGGTAAAAATGCTGATACACCATTTCTACCACTAGACCGCAATGCCAAGAGGATTCT 1269
|||||| ||||||||||||| ||||||||| |||||||| ||| | ||||||||||||||
Sbjct 1213 GAATGGCAAAAATGCTGATAAACCATTTCTGCCACTAGATCGCCACGCCAAGAGGATTCT 1272
Query 1270 AGTGGTTGGAA-TGCATGCAAACGATCTTGGAAATCAGTGTGGAGGATGGACAAAGATAA 1328
||| ||||| | || ||| | ||||||||| ||||||| |||||||||||||||| |
Sbjct 1273 AGTCACTGGAACT-CACGCAGATGATCTTGGATATCAGTGCGGAGGATGGACAAAGACAT 1331
Query 1329 AATCCGGTCAAAGCGGCAGAATCACAATTGGCACGACGCTTTTGGATTCAATAAAAGCAG 1388
| ||||| ||||||||| |||||||| ||||||||||||||||| | || |||| ||
Sbjct 1332 GGTTCGGTCTAAGCGGCAGGATCACAATCGGCACGACGCTTTTGGACGCCATTAAAGAAG 1391
Query 1389 CAGTTGGAGACAAAACTGAAGTCATCT-TCGAGAAAACTCCAACAAAGGAAACCTTAGCA 1447
||||||||||| |||||||||| |||| | |||||||||||| ||||||||||||||||
Sbjct 1392 CAGTTGGAGACGAAACTGAAGTAATCTAT-GAGAAAACTCCATCAAAGGAAACCTTAGCC 1450
Query 1448 TCAAGTGATGGCTTCTCATACGCCATTGTTGCAGTGGGGGAACCTCCATACGCAGAAATG 1507
|||||||| || ||||| ||||||||||||||||| |||||||| || || ||||| | |
Sbjct 1451 TCAAGTGAAGGATTCTCTTACGCCATTGTTGCAGTCGGGGAACCGCCCTATGCAGAGACG 1510
Query 1508 AAGGGAGATAACTCGGAACTCACTATACC-TTTCAATGGTAACAACATTATAACCGCGGT 1566
| ||| |||||||||||||||| ||| | ||| ||||||| | ||||| |||| |||||
Sbjct 1511 ATGGGGGATAACTCGGAACTCAAAATATCATTT-AATGGTAGCGACATTGTAACTGCGGT 1569
Query 1567 TGCAGAGAAAATCCCGACTCTAGTGATTTTGTTCTCAGGACGTCCAATGGTTTTAGAGCC 1626
||||||| |||||||||||| ||||| ||| |||||||||| || ||||| | |||||
Sbjct 1570 AGCAGAGATAATCCCGACTCTGGTGATCTTGATCTCAGGACGACCTGTGGTTCTGGAGCC 1629
Query 1627 AACGGTTCTTGAAAAGACTGAAGCTTTGGTCGCTGCTTGGTTCCCTGGAACTGAAGGGCA 1686
||||||||||||||||| || ||| |||||||||||||| | |||||||| ||||||||
Sbjct 1630 GACGGTTCTTGAAAAGACAGAGGCTCTGGTCGCTGCTTGGCTGCCTGGAACAGAAGGGCA 1689
Query 1687 AGGGATGAG-TGATGTGATTTTCGGAGATTATGACTTCAAAGGGAAGTTACCAGTGAGCT 1745
||||||| | ||| || ||||| ||||||||||||||||| ||||||||||||||||| |
Sbjct 1690 AGGGATG-GCTGACGTTATTTTTGGAGATTATGACTTCAAGGGGAAGTTACCAGTGAGTT 1748
Query 1746 GGTTCAAACGCGTTGACCAGTTGCCGTTAAACGCTGA-AGCAAATTCGTATGACCCATTG 1804
|||||||||| ||||| || ||||| || | ||| | | ||| ||||||||||||||||
Sbjct 1749 GGTTCAAACGTGTTGAGCATTTGCCACTAGATGCTCAGACCAA-TTCGTATGACCCATTG 1807
Query 1805 TTTCCTCTTGGTTTCGGTCTCACTTC 1830
|| ||| ||||||||||||||| |||
Sbjct 1808 TTCCCTTTTGGTTTCGGTCTCAATTC 1833
> Ahg485082 jgi|Araly1|485082|fgenesh2_kg.5__1074__AT3G47050.1
Length=1905
Score = 1596 bits (864), Expect = 0.0
Identities = 1512/1823 (83%), Gaps = 52/1823 (3%)
Strand=Plus/Plus
Query 25 TGAGGAGTCTTCATGGGTTTACAAGAACCGAGACGCGCCGGTGGAGGCGCGTGTGAAGGA 84
|||| |||| ||||| |||||||||||||| |||||||| ||||||||||||||||| ||
Sbjct 36 TGAGAAGTCGTCATGTGTTTACAAGAACCGCGACGCGCCAGTGGAGGCGCGTGTGAAAGA 95
Query 85 CCTTCTCTCTCGCATGACTTTGCCGGAGAAGATTGGTCAGATGACTCAGATAGAACGCTC 144
|||||||||||| |||||| |||| ||||| || || ||||||||| ||| ||||||
Sbjct 96 CCTTCTCTCTCGGATGACTCTGCCTGAGAAAATCGGCCAGATGACTTTGATCGAACGCAG 155
Query 145 CGTCGCTTCT-CCTCAAGTCATTACTA-A-TTCTTTCATCGGCAGTGTACAGAGCGGCGC 201
|| |||||| | ||||||| | | ||| | |||||| ||||||| || || |||
Sbjct 156 TGTGGCTTCTGAGGC-CGTCATTA-GAGATTTC-TCCATCGGTAGTGTACTGAACGCCGC 212
Query 202 CGGAAGTTGGCCGTTGGAGGATGCTAAGTCGTCGGATTGGGCTGATATGATCGACGGTTT 261
||||||||||| || |||||||| ||||||||| ||||||| |||||||||||||| ||
Sbjct 213 AGGAAGTTGGCCATTCGAGGATGCAAAGTCGTCGAATTGGGCGGATATGATCGACGGCTT 272
Query 262 TCAGCGTTCAGCGTTAGCGTCGCGTTTGGGAATTCCAATAATCTACGGCACTGACGCCGT 321
||||| |||||||||| |||||||||||||||||| ||||| ||||||| ||||||| |
Sbjct 273 CCAGCGATCAGCGTTAGAGTCGCGTTTGGGAATTCCCATAATTTACGGCATTGACGCCAT 332
Query 322 TCACGGCAACAATAACGTCTACGGCGCCACCGTCTTCCCCCACAACATTGGACTCGGCGC 381
||| ||||||||| ||||||| ||||||||| ||||||||||||||||||| ||||||||
Sbjct 333 TCATGGCAACAATGACGTCTATGGCGCCACCATCTTCCCCCACAACATTGGTCTCGGCGC 392
Query 382 CACCAGAGACGCAGATTTGGTCAAAAGAATTGGTGCTGCAACAGCACTTGAAATAAGGGC 441
||||||||| ||||||||||||||||||||||| |||||||||||||||||| | |||||
Sbjct 393 CACCAGAGATGCAGATTTGGTCAAAAGAATTGGAGCTGCAACAGCACTTGAAGTTAGGGC 452
Query 442 TAGTGGCGTTCACTGGACGTTTGCTCCTTGTGTGGCCGTTTTGGGAGATCCGAGGTGGGG 501
|| || ||||||||| |||||||||| || || || || || ||||||||| |||||
Sbjct 453 GAGCGGTGTTCACTGGTCGTTTGCTCCATGCGTCGCTGTGGTGAAAGATCCGAGATGGGG 512
Query 502 ACGATGCTATGAAAGTTATAGTGAAGCTGCTAAAATTGTATGTGAGATGAGTTTGCTTAT 561
| |||||||||| |||||| |||||| |||| |||||| | |||||||| || ||| |
Sbjct 513 AAGATGCTATGAGAGTTATGGTGAAGTTGCTCCAATTGTTTCTGAGATGACTTCACTTGT 572
Query 562 CTCGGGCCTACAAGGCGAGCCA-CCTGAAGAACACCCTTA-CGGTTACCCTTTTCTTGCA 619
||| || ||||||||||||||| || |||||||| | || |||||||||||||| ||||
Sbjct 573 CTCAGGTCTACAAGGCGAGCCATCC-AAAGAACACAC-TAGCGGTTACCCTTTTCATGCA 630
Query 620 GGAAGAAACAACGTGATCGCGTGTGCTAAACACTTTGTTGGAGATGGTGGTACTGAGAAA 679
|||||||| |||||| | |||||||| || |||||||||||||| |||||||| || ||
Sbjct 631 GGAAGAAAAAACGTGGTTGCGTGTGCCAAGCACTTTGTTGGAGACGGTGGTACCGA-TAA 689
Query 680 GG-CTTAAGCGAAGGGAACACTATAACAT-C-ATATGAAGACTTGGAGA--AAATACATG 734
|| | ||| ||||| ||||| || | | |||||||||||||||| ||| |||
Sbjct 690 GGCCATAAATGAAGGAAACACCAT--TTTGCGGTATGAAGACTTGGAGAGGAAACACA-- 745
Query 735 TTGCTCCCTATCTTAATTGTATTGCTCAGGGAGTGTCGACCGTTATGGCCTCATT-TTCC 793
||||||||||| || |||||| |||| ||||| || |||||||||| ||| || ||
Sbjct 746 TTGCTCCCTATAAGAAATGTATTTCTCAAGGAGTCTCTACCGTTATGGTCTC-TTACTCT 804
Query 794 AGTTGGAATGGAAG-TAGACTCCACTCCGACTATTTCCTTTTGACTGAAGTTCTTAAACA 852
|||||||| || || || |||||||||| |||||||||| || || |||||||| |||||
Sbjct 805 AGTTGGAACGG-AGATAAACTCCACTCCCACTATTTCCTCTTAACGGAAGTTCTCAAACA 863
Query 853 GAAACTCGGTTTCAAGGGATTTCTAGTTTCAGACTGGGATGGTTTGGAGAC-GATAAGCG 911
||||||||||||| ||||| | |||| ||||||||||| |||||||| | | | ||||
Sbjct 864 AAAACTCGGTTTCAGGGGATATATAGTCTCAGACTGGGAAGGTTTGGA-CCGGCTTAGCG 922
Query 912 AGCCAGAAGGTTCCAACTACCGTAACTGCGTCAAACTCGGGATTAATGCTGGAATCGACA 971
| ||| |||||| |||||||| |||||||||||| | |||||||||||||||||||| |
Sbjct 923 ACCCACCAGGTTCAAACTACCGCAACTGCGTCAAAATGGGGATTAATGCTGGAATCGATA 982
Query 972 TGGTGATGGTGCCTTTCAAGTACGAACAGTTCATACAGGACATGACAGATTTGGTGGAGT 1031
|||||||||| ||||||||||| ||| |||||||| | ||| ||| |||| |||||||||
Sbjct 983 TGGTGATGGTACCTTTCAAGTATGAAAAGTTCATAAACGACCTGATAGATCTGGTGGAGT 1042
Query 1032 CAGGGGAAATACCAATGGCTCGGGTCAATGATGCTGTTGAAAGAATACTAAGAGTGAAGT 1091
|||||||| || |||||||| || |||| ||||||||||||||||| ||||||||||
Sbjct 1043 CAGGGGAAGTATTGATGGCTCGTGTTGATGACGCTGTTGAAAGAATACTCAGAGTGAAGT 1102
Query 1092 TTGTTGCTGGTCTCTTTGAACATCCTCTTGCGGACCGATCTTTGTTGGGAACTGTTGGCT 1151
||||||| || ||||| ||| |||||| | || ||||| ||||| | |||||| |
Sbjct 1103 TTGTTGCAGGACTCTTCGAATTTCCTCTCACAGATCGATCATTGTTACCTATTGTTGGTT 1162
Query 1152 GCAAGGAACATAGAGAAGTGGCACGTGAAGCGGTTAGAAAGTCATTAGTGT-TGCTGAAG 1210
||||||||||||||||| |||| |||||||| ||||||||||| |||| | |||| |||
Sbjct 1163 GCAAGGAACATAGAGAATTGGCGCGTGAAGCTGTTAGAAAGTCGCTAGT-TCTGCTAAAG 1221
Query 1211 AATGGTAAAAATGCTGATACACCATTTCTACCACTAGACCGCAATGCCAAGAGGATTCTA 1270
|| || ||| ||| | | | |||||| ||| || | |||||||| |||| ||||||
Sbjct 1222 AACGGCAAATATG--G--AGA--ATTTCTGCCATTAAATTGCAATGCCGAGAGAATTCTA 1275
Query 1271 GTGGTTGGAATGCATGCAAACGATCTTGGAAATCAGTGTGGAGGATGGACAAAGATAAAA 1330
|||||||||| ||||||| | ||||||||| |||| || || ||||||||||||| ||
Sbjct 1276 GTGGTTGGAACGCATGCAGATGATCTTGGATATCAATGCGGTGGATGGACAAAGACAATG 1335
Query 1331 TCCGGTCAAAGCGGCAGAATCACA-ATTGGCACGACGCTTTTGGATTCAATAAAAGCAGC 1389
| ||||||||||| || |||||| | |||||| |||||||| ||| |||||||||| ||
Sbjct 1336 TATGGTCAAAGCGGAAGGATCACAGA-TGGCACAACGCTTTTAGATGCAATAAAAGCGGC 1394
Query 1390 AGTTGGAGACAAAACTGAAGTCATCT-TCGAGAAAACTCCAACAAAGGAAACCTTAGCAT 1448
||||||||||||||| ||||| |||| | ||||||| |||| || ||||||||||||| |
Sbjct 1395 AGTTGGAGACAAAACCGAAGTGATCTAT-GAGAAAAATCCATCAGAGGAAACCTTAGCCT 1453
Query 1449 CAAG-TGATGGCTTCTCATACGCCATTGTTGCAGTGGGGGAACCTCCATACGCAGA-AAT 1506
|| | | || | || || || || |||||||| ||||||||| | || || | ||| | |
Sbjct 1454 CAGGAT-ATAGATTTTCTTATGCAATTGTTGCGGTGGGGGAATCACCCTATGTAGAGACT 1512
Query 1507 GAAGGGAGATAACTCGGAACTCACTATACCTTTCAATGGTAACAACATTATAACCGCGGT 1566
| ||| |||||||| |||||||| |||||||| || |||| | | ||||||||||||||
Sbjct 1513 -ATGGGGGATAACTCAGAACTCACAATACCTTTTAACGGTAGCGAGATTATAACCGCGGT 1571
Query 1567 TGCAGAGAAAATCCCGACTCTAGTGATTTTGTTCTCAGGACGTCCAATGGTT-TTAGAGC 1625
||||||||||||||||||||||||||| |||||||||||||| || |||||| || ||||
Sbjct 1572 TGCAGAGAAAATCCCGACTCTAGTGATCTTGTTCTCAGGACGGCCTATGGTTCTT-GAGC 1630
Query 1626 C--AACGGTTCTTGAAAAGACTGAAGCTTTGGTCGCTGCTTGGTTCCCTGGAACTGAAGG 1683
| || | ||||||||||| | || ||| |||||||||||||| | ||||| ||||||||
Sbjct 1631 CGCAA-G-TTCTTGAAAAGGCAGAGGCTCTGGTCGCTGCTTGGCTGCCTGGTACTGAAGG 1688
Query 1684 GCAAGGGAT-GAGTGATGTGATTTTCGGAGATTATGACTTCAAAGGGAAGTTACCAGTGA 1742
|||||||| | |||||| ||||||||||||||||| ||| |||||||||||||| ||
Sbjct 1689 ACAAGGGATTGC-TGATGTAATTTTCGGAGATTATGAGTTCCGAGGGAAGTTACCAGCGA 1747
Query 1743 GCTGGTTCAAACGCGTTGACCAGTTGCCG-TTAAACGCTGAAGCAAATTCGTATGACCCA 1801
||||||||||||| || |||||||||||| || | | |||| ||||| |||| ||||
Sbjct 1748 GCTGGTTCAAACGTGTAGACCAGTTGCCGCTTGA-CATTGAATCAAATGGGTATCTCCCA 1806
Query 1802 TTGTTTCCTCTTGGTTTCGGTCT 1824
||||||||||||||||| |||||
Sbjct 1807 TTGTTTCCTCTTGGTTTTGGTCT 1829
> Ahg485080 jgi|Araly1|485080|fgenesh2_kg.5__1072__AT3G47040.1
Length=1791
Score = 970 bits (525), Expect = 0.0
Identities = 839/989 (85%), Gaps = 28/989 (3%)
Strand=Plus/Plus
Query 866 AAGGGATTTCT-AGTTTCAGACTGGGATGGTTTGGAGAC-GATAAGCGAGCCAGAAGGTT 923
||||||||| | | |||| |||||||| | |||||| || | | || |||||| ||||
Sbjct 781 AAGGGATTTGTCA-TTTCTGACTGGGAAGCTTTGGA-ACGGCTTAGTGAGCCATTCGGTT 838
Query 924 CCAACTACCGTAACTGCGT-CAAA-CTCGGGATTAATGCTGGAATCGACATGGTGATGGT 981
| |||||||| |||||||| ||| ||| | ||||||||||| ||||||||||||||||
Sbjct 839 CTAACTACCGCAACTGCGTGAAAACCTC-AG-TTAATGCTGGAGTCGACATGGTGATGGT 896
Query 982 GCCTTTCAAGTACGAACAGTTCATACAGGACATGACAGATTTGGTGGAGTCAGGGGAAAT 1041
|||||||||||| |||||||| ||| ||||| | |||||| ||||||||||||||||| |
Sbjct 897 GCCTTTCAAGTATGAACAGTTTATAAAGGACCTCACAGATCTGGTGGAGTCAGGGGAAGT 956
Query 1042 ACCAATGGCTCGGGTCA-ATGATGCTGTTGAAAGAATACTAAGAGTGAAGTTTGTTGCTG 1100
| ||||| ||||| | | ||||||||||||| |||||||| ||||||||||||||||| |
Sbjct 957 AACAATGTCTCGGAT-AGATGATGCTGTTGAGAGAATACTTAGAGTGAAGTTTGTTGCGG 1015
Query 1101 GTCTCTTTGAACATCCTCTTG-CGGACCGATCTTTGTTGGGAACTGTTGGCTGCAAGGAA 1159
|||| |||||| ||||||| | ||||||||||||| ||||| ||||||||||||||||||
Sbjct 1016 GTCTTTTTGAAAATCCTCT-GACGGACCGATCTTTATTGGGTACTGTTGGCTGCAAGGAA 1074
Query 1160 CATAGAGAAGTGGCACGTGAAGCGGTTAGAAAGTCATTAGTGTTGCTGAAGAATGGTAAA 1219
||||||||| | || |||||| ||||||||||||| |||||| | |||||||| | |||
Sbjct 1075 CATAGAGAACTAGCTCGTGAATCGGTTAGAAAGTCGTTAGTGCTCCTGAAGAACCGAAAA 1134
Query 1220 AATGCTGATACA-CCATTTCTACCACTAGACCGCAATGCCAAGAGGATTCTAGTGGTTGG 1278
||| |||| | | |||||||| |||||||| || || |||||||| |||||||| |||
Sbjct 1135 AATTCTGAGA-AGCCATTTCTGCCACTAGATCGTAACGCCAAGAGAATTCTAGTCACTGG 1193
Query 1279 AATGCATGCAAACGATCTTGGAAATCAGTGTGGAGGATGGACAAAGATAAAATCCGGTCA 1338
|| ||| | ||||||||||| ||||||| || |||||||||||| | | |||||
Sbjct 1194 AACGCACACGGACGATCTTGGATATCAGTGCGGGGGATGGACAAAGGCATGGTTCGGTCT 1253
Query 1339 AAGCGGCAGAATCACAATTGGCACGACGCTTTTGGATTCAATAAAAGCAGCAGTTGGAGA 1398
||||||||| |||||||| ||||| ||||||||||| | || |||| ||||||||||||
Sbjct 1254 AAGCGGCAGGATCACAATCGGCACAACGCTTTTGGACGCCATTAAAGAAGCAGTTGGAGA 1313
Query 1399 CAAAACTGAAGTCATCTTCGAGAAAACTCCAACA-AAGGAAACCTTAGCATCAAGTG-AT 1456
||| |||||||| |||| |||||| ||||| | ||| |||| ||||| || ||| |
Sbjct 1314 CAAGACTGAAGTGATCTACGAGAAGACTCCTTCCGAAG-AAACTTTAGCCTCG-GTGCAA 1371
Query 1457 GGCTTCTCATACGCCATTGTTGCAGTGGGGGAACCTCCATACGCAGA-A-ATGAAGGGAG 1514
|||||||| |||||||||||||||||||||||| |||| |||||||| | || |||||
Sbjct 1372 GGCTTCTCCTACGCCATTGTTGCAGTGGGGGAAACTCCCTACGCAGAGACATT--GGGAG 1429
Query 1515 ATAACTCGGAACTCACTATACCTTTCAATGGTAACAACATTATAACCGCGGTTGCAGAGA 1574
|||||||||||||||| ||||| || || |||||| ||||| ||||||||||||||||||
Sbjct 1430 ATAACTCGGAACTCACAATACCCTTAAACGGTAACGACATTGTAACCGCGGTTGCAGAGA 1489
Query 1575 AAATCCCGACTCTAGT-GATTTTGTTCTCAGGACGTCCAATGGTT-TTAGAGCCAACGGT 1632
|||| ||||||||||| | | |||||||| ||||| || |||||| || ||||| ||||
Sbjct 1490 AAATTCCGACTCTAGTTG-TCTTGTTCTCTGGACGGCCTATGGTTCTT-GAGCCGCCGGT 1547
Query 1633 TCTTGAAAAGACTGAAGCTTTGGTCGCTGCTTGGTTCCCTGGAACTGAAGGGCAAGGGAT 1692
|||||||||| |||| ||| |||||||||||||| | |||||||| ||||||||||| ||
Sbjct 1548 TCTTGAAAAGGCTGAGGCTCTGGTCGCTGCTTGGCTGCCTGGAACCGAAGGGCAAGGAAT 1607
Query 1693 GAGTGATGTGATTTTCGGAGATTATGACTTCAAAGGGAAGTTACCAGTGAGCTGGTTCAA 1752
||||||||| ||||| |||||||||||||| | ||||||||||||||||||||||||||
Sbjct 1608 GAGTGATGTCATTTTTGGAGATTATGACTTTGAGGGGAAGTTACCAGTGAGCTGGTTCAA 1667
Query 1753 ACGCGTTGACCAGTTGCCGTTAAACGCTGAAGCAAATTCGTATGACCCATTGTTTCCTCT 1812
|| |||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||
Sbjct 1668 ACACGTTGACCAGTTGCCGTTAACCGCTGAAGCCAATTCGTATGATCCATTGTTTCCTCT 1727
Query 1813 TGGTTTCGGTCTCA-CTTCCAATTTCGGT 1840
|||||| ||||||| || | |||| ||||
Sbjct 1728 TGGTTTTGGTCTCAACTAC-AATTCCGGT 1755
Score = 353 bits (191), Expect = 2e-96
Identities = 304/358 (85%), Gaps = 10/358 (3%)
Strand=Plus/Plus
Query 36 CATGGGTTTACAAGAACCGAGACGCGCCGGTGGAGGCGCGTGTGAAGGACCTTCTCTCTC 95
|||| ||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||
Sbjct 20 CATGCGTTTACAAGAACCAAGACGCGCCAGTGGAGGCGCGTGTAAAGGACCTTCTCTCTC 79
Query 96 GCATGACTTTGCCGGAGAAGATTGGTCAGATGACTCAGATAGAACGC-TCCGTCGCTTCT 154
|||||||| ||||||| ||||| || |||||||||||||| |||||| | |||| || ||
Sbjct 80 GCATGACTCTGCCGGAAAAGATAGGCCAGATGACTCAGATCGAACGCGT-CGTCACTACT 138
Query 155 CCTCAAGTCATTACTA-ATT-CTTTCATCGGCAGTGTACAGAGCGGCGCCGGAAGTTGGC 212
| || |||||||| | ||| | |||||||| ||||||| || ||| | ||||||||||
Sbjct 139 CATCCCGTCATTAC-AGATTAC-TTCATCGGTAGTGTACTGAACGGTGGAGGAAGTTGGC 196
Query 213 CGTTGGAGGATGCTAAGTCGTCGGATTGGGCTGATATGATCGACGGTTTTCAG--CGTTC 270
|||| |||||||||||| |||||||||||||||||||||||||||||| || || |
Sbjct 197 CGTTCGAGGATGCTAAGACGTCGGATTGGGCTGATATGATCGACGGTTACCAAAACG--C 254
Query 271 AGCGTTAGCGTCGCGTTTGGGAATTCCAATAATCTACGGCACTGACGCCGTTCACGGCAA 330
||||||||||||||| || |||||||| || ||||| |||| ||| || || || |||||
Sbjct 255 AGCGTTAGCGTCGCGCTTAGGAATTCCGATCATCTATGGCATTGATGCTGTCCATGGCAA 314
Query 331 CAATAACGTCTACGGCGCCACCGTCTTCCCCCACAACATTGGACTCGGCGCCACCAGA 388
||| || |||||||| ||||| |||| ||||||||||| || ||||| |||||||||
Sbjct 315 CAACAATGTCTACGGAGCCACTATCTTTCCCCACAACATAGGCCTCGGAGCCACCAGA 372
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73361811870
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5