BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G47020.1
Length=942
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937443 jgi|Araly1|937443|scaffold_501634.1 339 3e-92
> Ahg937443 jgi|Araly1|937443|scaffold_501634.1
Length=1223
Score = 339 bits (183), Expect = 3e-92
Identities = 328/394 (83%), Gaps = 26/394 (7%)
Strand=Plus/Plus
Query 565 AATTGCAAAGGTAAATTAGGCATACTATGGCCAGT-GCCCTCTGGAGATCAGAGTCATGA 623
||||||||||||||||| ||| |||||||| || | ||||| | | | || | ||||||
Sbjct 813 AATTGCAAAGGTAAATTGGGCGTACTATGGTCA-TCGCCCT-TTG-G-TCTTACTCATGA 868
Query 624 AGTCACAAGAA-GTTTTGTGTTGCGGATTCTGGAAGATGCCAATAAACTGATATGGTCGA 682
| |||||| || |||||||||| ||||||| |||||||||||| || ||| ||||||||
Sbjct 869 ACTCACAA-AATATTTTGTGTTGTGGATTCTCGAAGATGCCAATGAATTGAGATGGTCGA 927
Query 683 GGACTGTCTACACATTGTC-TTTTAATTGGAAGAA---ACTTGTGAATAAATCTCTATAC 738
|||| |||||||||| | | || |||||||||| | ||| |||||| |||||||||
Sbjct 928 AGACTACCTACACATTGCCGTCTT-ATTGGAAGAATCTAGTTGCGAATAACTCTCTATAC 986
Query 739 ATTGTTGGGATGACTAGTGGAGGTGAAATTGTGTTATCTACACGC---C-----A-TCTA 789
||||| ||||||||||||| |||||||||||||||||| ||| || | | ||||
Sbjct 987 ATTGTCGGGATGACTAGTGCAGGTGAAATTGTGTTATCGACATGCTATCTAAAGATTCTA 1046
Query 790 AACTATCCTTTCTACATTGTCTACTATAATCCGGTGAACAACACTGC-GGCAAAAAATGA 848
|||||||||||||||||||||||||| ||| ||||| || ||||| || ||||| |||
Sbjct 1047 AACTATCCTTTCTACATTGTCTACTACAATGTAGTGAAAAAGACTGCAGG-AAAAATTGA 1105
Query 849 AATCCAGTTTGGGAATATCGCTAATAAGAAGGCTGAAAACTCAAGGATTTATACGTTTAT 908
|||||||||||||||||| ||||| | | |||| ||||||||||||| ||||| |||||
Sbjct 1106 AATCCAGTTTGGGAATATAGCTAAGA-G--GGCTAAAAACTCAAGGATCTATACATTTAT 1162
Query 909 AGACCATGTAGAGAATGTAGAGCATATGGATTAA 942
|||||||||||||||||||||| ||||||||||
Sbjct 1163 TGACCATGTAGAGAATGTAGAGCGTATGGATTAA 1196
Score = 222 bits (120), Expect = 3e-57
Identities = 280/351 (80%), Gaps = 35/351 (10%)
Strand=Plus/Plus
Query 249 TTCCTATGACAATGAGATTCATGCCCCTGTACGTGGGTTTCTTTGTAGCAAAGC---T-A 304
|||||||||| |||||||||||||||||||||| |||||||||||||||||| | | |
Sbjct 362 TTCCTATGACTATGAGATTCATGCCCCTGTACGAGGGTTTCTTTGTAGCAAATCTAGTAA 421
Query 305 ---G-TG-TCTATAACCCTAGCACAGGAGAGTGTGCATACCCTTACCTAGAGC--T-TC- 355
| || |||||||||||||||||||||| ||||| | | ||||| ||||| | |
Sbjct 422 GCCGATGATCTATAACCCTAGCACAGGAGA--GTGCAAAACTTTACCCAGAGCGATGACA 479
Query 356 TAG-GG-CT---TTG-GGA-C-ATTCTCCCCGTA-GATGC---TGAGAATCT-TGCAAAG 402
|| || || || | | ||| | ||| ||| | ||| || || | | |||
Sbjct 480 AAGAGGACTGAGATGAAAACCTATT-T-TGGGTATGATCCTATTGACAAACTATTC-AAG 536
Query 403 AAAG-TGTGCGTGCCCAAGGTATTGTTGGCGTCCGAGGATTTTGCATGTCGAGTTTCAAC 461
| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 -GTGTTGTGTGTGTCCAAGGTATTGTTGGCGTCCGAGGATTTTGCATGTCGAGTTTCAAC 595
Query 462 ATTAGGAAC-GGAAGAAGTTTGCTGGAGAATGATCCAATGCTCGCTACCCCATAGGCCTT 520
||||||||| || ||||| | ||||||||||||| |||| ||| |||||||||||||||
Sbjct 596 ATTAGGAACAGGT-GAAGTGTACTGGAGAATGATCGAATGTTCGATACCCCATAGGCCTT 654
Query 521 TTCGTGATGAGATATGCATTGATGGAGTTTTGTACTATTTAGCTAATTGCA 571
| |||| |||||||||||| |||||||||||||| ||| ||||| | ||||
Sbjct 655 TACGTGGTGAGATATGCATCGATGGAGTTTTGTATTATGTAGCTGAGTGCA 705
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34958714889
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5