BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G47030.1
Length=1427
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323331 jgi|Araly1|323331|fgenesh1_pm.C_scaffold_5000875 706 0.0
Ahg937443 jgi|Araly1|937443|scaffold_501634.1 176 4e-43
> Ahg323331 jgi|Araly1|323331|fgenesh1_pm.C_scaffold_5000875
Length=1260
Score = 706 bits (382), Expect = 0.0
Identities = 723/880 (82%), Gaps = 53/880 (6%)
Strand=Plus/Plus
Query 409 CTCTCCTATATCTGCCCATTACCAGATGCATTTCCCTAAAG-TTCTGGGTGCTTCAGCA- 466
||||| ||||||||| |||||||||||||||||||||||| || ||||| |||||| |
Sbjct 396 CTCTCGTATATCTGCTTATTACCAGATGCATTTCCCTAAAGATT-TGGGTTCTTCAG-AC 453
Query 467 AAGGTGTGTCCCCCTATACTTGGCTTGATCTGTTGCAAATCTA-GTAAGACGATGATTTT 525
|||| ||||||||||||||||||||||||||||||||||||| | ||| ||||||| |
Sbjct 454 CAGGTTTGTCCCCCTATACTTGGCTTGATCTGTTGCAAATCTAAG-AAGCCGATGATATG 512
Query 526 TAACCCTAGCACAAGAGAGTCAAAGTTCATTTCA--AC-AA---CGAA------GAGG-- 571
||||||||||||| |||||||||||| |||||| || || |||| ||||
Sbjct 513 TAACCCTAGCACAGGAGAGTCAAAGTACATTTCTTTACCAAGTGCGAAAACAAAGAGGAT 572
Query 572 G-TTGGCGTGAAGAGTACTTCATTTGGGTATGATCCTATCGACAAGCTATTCAAGGTATT 630
| || |||||| | ||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 573 GCTTACCGTGAACA---CTTCATTTGTATATGATCCTATCGACAAACTATTCAAGGTATT 629
Query 631 GTCCATGTCCGATGATTTTGTGTGTCGAGTTTCAACATTAGGAACGGAAGTAG-TGACTT 689
|| |||||| ||||||| |||| ||||||||||||||||||| ||||||| || | || |
Sbjct 630 GTGCATGTCTGATGATTGTGTGAGTCGAGTTTCAACATTAGGGACGGAAGAAGCT-ACCT 688
Query 690 GGAGAACGGTCGAATGTTCGGTACCCCATC-ACCCTTTACATAGTGAGATATGCATGGAT 748
||||||| |||||||||| | ||||||||| ||| ||||| || ||||| | |||||||
Sbjct 689 GGAGAACAGTCGAATGTTTGATACCCCATCTACC-TTTACGTAAAGAGATGTTCATGGAT 747
Query 749 GGGGTATTGTATTATTTAGCTAGGCGTGTGGGCGATGAAACTCCAAAACCTTATATGGTA 808
||||||||||| ||||||||| ||| ||| | |||||||| ||| |||||||||||||
Sbjct 748 GGGGTATTGTACTATTTAGCTCTGCGCCTGGACCATGAAACTTCAACACCTTATATGGTA 807
Query 809 GCAGCCTTTGAAGTTAGATTGGAGAGATTCAAGTTTCTACCAATGGATCTCAGATGTA-A 867
| ||||||||| |||||||||||||||||||||| |||||| || ||| || | || |
Sbjct 808 GTAGCCTTTGATGTTAGATTGGAGAGATTCAAGTGTCTACCTGTGAATCGGAGTTATATA 867
Query 868 ACACATTG-GTTGTTCAGCAGTCATAGATTACAAAGGTAAGTTGGCCGTAGTATGGCTAA 926
| |||||| || |||||||| ||||| | ||| ||||||||||||||||||||||||||
Sbjct 868 A-ACATTGCGT-GTTCAGCACTCATAAAGTACCAAGGTAAGTTGGCCGTAGTATGGCTAG 925
Query 927 ATGTGGATCGTGACAAT-CAACGACA-CATAGAAAGTTTTGAGCTGCGTGTTCTAAATGA 984
||| | | || | || |||| ||| || | || || |||||| |||||||||||||
Sbjct 926 ATG-GTAA--TG-CTATTCAACAACATCA-ACAA--TTG-GAGCTGTGTGTTCTAAATGA 977
Query 985 TGTTGATGAAGTGAAATGGTCTCAAATTATTTACGAATTGCCAAATTATTGGAATAATCT 1044
|| |||||||||| |||||| ||||| || ||||||||| ||| |||| |||||||
Sbjct 978 TGGTGATGAAGTGGCATGGTCGGGTATTATATATGAATTGCCATATTTTTGGTATAATCT 1037
Query 1045 ACCTGCGGATATCGACGTATCCATTGTTGGGATGACTAGTGCAGGTGAAATTGTGTTGGC 1104
| ||||||||| | |||||| |||||| |||| ||||| |||||||||||||||| ||||
Sbjct 1038 AGCTGCGGATACCTACGTATACATTGTCGGGACGACTACTGCAGGTGAAATTGTGATGGC 1097
Query 1105 GACAAGCCATATACGGCATCCTTTCTACATCTTCTACTACAGTACCGTGACTCTTGCTAT 1164
|||||||||| |||| | |||||||||||| |||||| |||||||||||||| | ||||
Sbjct 1098 GACAAGCCATCCACGGGAACCTTTCTACATCATCTACTTCAGTACCGTGACTCATACTAT 1157
Query 1165 -AGTACA-ACTTCGAA-TCGATTTCGGAATTGAAGCTCCGGAGGCTAATCACTGCTCAAC 1221
| || | | || ||| |||| |||||||||| |||| | || || ||||||||||
Sbjct 1158 GA-TA-AGAGTT-GAAATCGAATTCGGAATTGTAGCTTTGAAGCCT---CACTGCTCAAA 1211
Query 1222 GATGTCGAC-ATTTGTAAACCATGTGGAGAATGTAGAGCT 1260
||| ||||| |||| |||||||||| ||| |||| |||||
Sbjct 1212 GATTTCGACGATTT-TAAACCATGTAGAGGATGTCGAGCT 1250
Score = 344 bits (186), Expect = 1e-93
Identities = 289/337 (86%), Gaps = 13/337 (4%)
Strand=Plus/Plus
Query 53 ATGTCTGGGATGT-TAGGGTTAAGCGCCGTCATGGGAAAACGGCCGAAGCAGCAAGTCAC 111
|||| |||||| | ||||||| ||||||| |||||||||||||| |||||||||||||||
Sbjct 1 ATGTTTGGGAT-TCTAGGGTTTAGCGCCGCCATGGGAAAACGGCAGAAGCAGCAAGTCAC 59
Query 112 CGCCCGTCCAAGGAAGTGTCCAATAGAAAAAC-CGGAGGAGATACCAGA-TGATCTCTTG 169
|||||| ||||| || | |||| || ||||| || ||||| | ||| | ||||||||||
Sbjct 60 CGCCCGCCCAAGCAACTCCCCAAGAG-AAAACTCGAAGGAGGTGCCA-ATTGATCTCTTG 117
Query 170 ATTGATGTTTTCTCAAGATTGTCCA-TTGAAGACGTTGCAAGGTGTCGTTGCCTGTCGAG 228
||||| | ||| ||||||| ||| | ||||||||||| |||||||||||| ||||||
Sbjct 118 ATTGACATCTTCACAAGATT-ACCAGTGGAAGACGTTGCGAGGTGTCGTTGCGTGTCGAA 176
Query 229 GTTTTGGTCTTCCATACTACGTCGTCGATATTTCACGGAACTGTTCCACAAAATGTCATC 288
| |||||||||||||||||||||||||| ||||||| ||||||||| |||||| |||||
Sbjct 177 GCTTTGGTCTTCCATACTACGTCGTCGAGATTTCACCCAACTGTTCCTCAAAATCTCATC 236
Query 289 GACCCGGCCTCGTATACTATTCACCTTCCTTTACTATGGTAAGCGACTCTTTTACTCCAT 348
||| |||||||||||||||||||||||||||||| | || | ||||||||||||||||||
Sbjct 237 GACTCGGCCTCGTATACTATTCACCTTCCTTTACAACGGGAGGCGACTCTTTTACTCCAT 296
Query 349 GCCTCAAGATCTAGA-CC---CCAGCAACCACTACTC 381
|||||||||||||| || || ||||| |||||||
Sbjct 297 ACCTCAAGATCTAGATCCAGACC-GCAACAACTACTC 332
> Ahg937443 jgi|Araly1|937443|scaffold_501634.1
Length=1223
Score = 176 bits (95), Expect = 4e-43
Identities = 380/509 (75%), Gaps = 53/509 (10%)
Strand=Plus/Plus
Query 622 CAAGGTATTGTCCATGTCCGATGATTTTGTGTGTCGAGTTTCAACATTAGGAAC--G-GA 678
||||||||||| |||||| ||||||| ||||||||||||||||||||||| | ||
Sbjct 551 CAAGGTATTGTTGGCGTCCGAGGATTTTGCATGTCGAGTTTCAACATTAGGAACAGGTGA 610
Query 679 AGTAGTGACTTGGAGAACGGTCGAATGTTCGGTACCCCATCA-CCCTTTACATAGTGAGA 737
||| || || ||||||| | ||||||||||| |||||||| | ||||||| | ||||||
Sbjct 611 AGT-GT-AC-TGGAGAATGATCGAATGTTCGATACCCCAT-AGGCCTTTACGTGGTGAGA 666
Query 738 TATGCATGGATGGGGTATTGTATTATTTAGCT-AG-GCGTGTGGGCGATGAAACTCCAAA 795
||||||| ||||| || ||||||||| ||||| || || | || || ||| |||| |
Sbjct 667 TATGCATCGATGGAGTTTTGTATTATGTAGCTGAGTGC-ACT-GGAAATAAAATTCCACA 724
Query 796 ACCTTATATGGTAG-CAGCCTTTGAAGTTAGAT-TGGAGAGATTCAAGTTTCTACCAATG 853
|| ||||||||||| | |||||| ||||| | || | || |||||||||||| | |
Sbjct 725 ACGTTATATGGTAGTTTG-CTTTGATGTTAGGTCTGAAAAG-TTCAAGTTTCTAGC--T- 779
Query 854 GATCTCAG-A-TGTAAACACATTGGTTGTTCAGCAGTCATAGATTACAAAGGTAAGTTGG 911
| | || | | || | | |||| |||||| | | ||| ||| ||||||||| ||||
Sbjct 780 G---T-AGAACT-TATA-A-TTTGG-TGTTCAACTCTGATAAATTGCAAAGGTAAATTGG 831
Query 912 CCGTAGTATGG-C-T--AAATGTGGATCGTGAC-AATCAACGACACATAGAA-AGTTTTG 965
|||| ||||| | | | ||| || | || || ||| |||| | || | |||||
Sbjct 832 GCGTACTATGGTCATCGCCCTTTGG-TC-TTACTCATGAAC-TCACA-A-AATA-TTTTG 885
Query 966 AGCTGCGTG-TTCT-AAATGATGTTGATGAAGTGAAATGGTCTCAA-ATTATTTACGA-A 1021
| || | | |||| || |||| ||||| ||| |||||| || | || ||| | |
Sbjct 886 TGTTGTG-GATTCTCGAA-GATGCCAATGAATTGAGATGGTC-GAAGACTACCTAC-ACA 941
Query 1022 TTGCCAAATTATTGGAATAATCTACCTGCGGAT-A-TCGACGTATCCATTGTTGGGATGA 1079
||||| ||||||||| |||||| |||| || | || | ||| |||||| |||||||
Sbjct 942 TTGCCGTCTTATTGGAAGAATCTAGTTGCGAATAACTC-TC-TATACATTGTCGGGATGA 999
Query 1080 CTAGTGCAGGTGAAATTGTGTTGGCGACA 1108
|||||||||||||||||||||| |||||
Sbjct 1000 CTAGTGCAGGTGAAATTGTGTTATCGACA 1028
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53364433245
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5