BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G47040.2
Length=2051
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485080 jgi|Araly1|485080|fgenesh2_kg.5__1072__AT3G47040.1 1483 0.0
Ahg323329 jgi|Araly1|323329|fgenesh1_pm.C_scaffold_5000873 1291 0.0
Ahg485079 jgi|Araly1|485079|fgenesh2_kg.5__1071__AT3G47000.1 1262 0.0
Ahg485082 jgi|Araly1|485082|fgenesh2_kg.5__1074__AT3G47050.1 1151 0.0
> Ahg485080 jgi|Araly1|485080|fgenesh2_kg.5__1072__AT3G47040.1
Length=1791
Score = 1483 bits (803), Expect = 0.0
Identities = 922/981 (94%), Gaps = 2/981 (0%)
Strand=Plus/Plus
Query 996 AAGGGATTTGTCATTTCAGACTGGGAAGCTTTGGAACGGCTAAGCGAGCCATTCGGTTCA 1055
||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||
Sbjct 781 AAGGGATTTGTCATTTCTGACTGGGAAGCTTTGGAACGGCTTAGTGAGCCATTCGGTTCT 840
Query 1056 AACTACCGCAACTGCGTCAAAATCTCAGTTAATGCTGGAGTTGACATGGTGATGGTGCCT 1115
||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||
Sbjct 841 AACTACCGCAACTGCGTGAAAACCTCAGTTAATGCTGGAGTCGACATGGTGATGGTGCCT 900
Query 1116 TTCAAGTATGAACAGTTTATAAAGGACCTCACAGATTTGGTGGAGTCAGGGGAAGTAACT 1175
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 901 TTCAAGTATGAACAGTTTATAAAGGACCTCACAGATCTGGTGGAGTCAGGGGAAGTAACA 960
Query 1176 ATGTCTCGGATTGATGATGCTGTTGAGAGAATACTCAGGGTGAAGTTTGTTGCGGGTCTT 1235
||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 961 ATGTCTCGGATAGATGATGCTGTTGAGAGAATACTTAGAGTGAAGTTTGTTGCGGGTCTT 1020
Query 1236 TTCGAACATCCTCTCACGGACCGGTCTTTATTGGGTACCGTTGGCTGCAAGGAGCATAGA 1295
|| ||| ||||||| |||||||| |||||||||||||| |||||||||||||| ||||||
Sbjct 1021 TTTGAAAATCCTCTGACGGACCGATCTTTATTGGGTACTGTTGGCTGCAAGGAACATAGA 1080
Query 1296 GAACTAGCGCGTGAATCGGTTAGAAAGTCGTTAGTTCTGCTAAAGAACGGGACAAATTCT 1355
|||||||| |||||||||||||||||||||||||| || || |||||| | | |||||||
Sbjct 1081 GAACTAGCTCGTGAATCGGTTAGAAAGTCGTTAGTGCTCCTGAAGAACCGAAAAAATTCT 1140
Query 1356 GAGAAGCCATTTCTGCCACTAGATCGCAATGTCAAGAGAATTCTAGTCACTGGGACACAC 1415
|||||||||||||||||||||||||| || | ||||||||||||||||||||| || |||
Sbjct 1141 GAGAAGCCATTTCTGCCACTAGATCGTAACGCCAAGAGAATTCTAGTCACTGGAACGCAC 1200
Query 1416 GCAGACGATCTTGGATATCAGTGCGGGGGATGGACAAAGGCATGGTTTGGTCTAAGCGGC 1475
| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1201 ACGGACGATCTTGGATATCAGTGCGGGGGATGGACAAAGGCATGGTTCGGTCTAAGCGGC 1260
Query 1476 AGGATCACAATCGGGACAACGCTTTTGGACGCCATTAAAGAAGCAGTTGGAGACAAGACC 1535
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 AGGATCACAATCGGCACAACGCTTTTGGACGCCATTAAAGAAGCAGTTGGAGACAAGACT 1320
Query 1536 GAAGTGATCTACGAGAAGACTCCTTCAGAAGAAACTTTAGCCTCGTTACAACGCTTCTCC 1595
|||||||||||||||||||||||||| |||||||||||||||||| | ||| ||||||||
Sbjct 1321 GAAGTGATCTACGAGAAGACTCCTTCCGAAGAAACTTTAGCCTCGGTGCAAGGCTTCTCC 1380
Query 1596 TACGCCATTGTTGCAGTGGGGGAAACTCCCTACGCAGAGACATTGGGAGATAACTCGGAA 1655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 TACGCCATTGTTGCAGTGGGGGAAACTCCCTACGCAGAGACATTGGGAGATAACTCGGAA 1440
Query 1656 CTCACAATACCATTAAACGGTAACGACATTGTAACTGCA-TTAGCAGAGAAAATCCCGAC 1714
||||||||||| ||||||||||||||||||||||| || || ||||||||||| |||||
Sbjct 1441 CTCACAATACCCTTAAACGGTAACGACATTGTAACCGCGGTT-GCAGAGAAAATTCCGAC 1499
Query 1715 TCTAGTGGTCTTGTTCTCAGGACGGCCTTTGGTTCTTGAGCCGCTGGTTCTTGAAAAGGC 1774
|||||| ||||||||||| ||||||||| ||||||||||||||| |||||||||||||||
Sbjct 1500 TCTAGTTGTCTTGTTCTCTGGACGGCCTATGGTTCTTGAGCCGCCGGTTCTTGAAAAGGC 1559
Query 1775 TGAGGCTCTGGTCGCTGCTTGGCTTCCTGGAACGGAAGGGCAAGGGATGACTGATGTCAT 1834
|||||||||||||||||||||||| |||||||| ||||||||||| |||| |||||||||
Sbjct 1560 TGAGGCTCTGGTCGCTGCTTGGCTGCCTGGAACCGAAGGGCAAGGAATGAGTGATGTCAT 1619
Query 1835 ATTTGGAGATTATGACTTTGAGGGGAAGTTACCAGTGAGCTGGTTCAAACGCGTTGACCA 1894
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1620 TTTTGGAGATTATGACTTTGAGGGGAAGTTACCAGTGAGCTGGTTCAAACACGTTGACCA 1679
Query 1895 GTTGCCGTTAACCGCTGATGCTAATTCATATGATCCATTGTTTCCTCTTGGTTTTGGTCT 1954
|||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||
Sbjct 1680 GTTGCCGTTAACCGCTGAAGCCAATTCGTATGATCCATTGTTTCCTCTTGGTTTTGGTCT 1739
Query 1955 CAACTACAATTCCAGTGAGAA 1975
||||||||||||| |||||||
Sbjct 1740 CAACTACAATTCCGGTGAGAA 1760
Score = 592 bits (320), Expect = 5e-168
Identities = 354/371 (95%), Gaps = 0/371 (0%)
Strand=Plus/Plus
Query 48 ATGGAAGGAAGCAATGAAACATGCGTTTACAAGAACAAAGACGCGCCAGTGGAGGCGCGT 107
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 ATGGAAGGCAGCAATGAAACATGCGTTTACAAGAACCAAGACGCGCCAGTGGAGGCGCGT 60
Query 108 GTAAAGGACCTTCTCTCTCGCATGACTCTGCCGGAAAAGATCGGCCAGATGACTCAGATC 167
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 GTAAAGGACCTTCTCTCTCGCATGACTCTGCCGGAAAAGATAGGCCAGATGACTCAGATC 120
Query 168 GAACGCGTCGTCACTACTCCTCCTGTCATTACAGATAACTTCATCGGTAGTGTATTGAAC 227
||||||||||||||||||| ||| |||||||||||| ||||||||||||||||| |||||
Sbjct 121 GAACGCGTCGTCACTACTCATCCCGTCATTACAGATTACTTCATCGGTAGTGTACTGAAC 180
Query 228 GGTGGAGGAAGTTGGCCGTTCGAGGACGCTAAGACGTCGGATTGGGCTGATATGATCGAC 287
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 GGTGGAGGAAGTTGGCCGTTCGAGGATGCTAAGACGTCGGATTGGGCTGATATGATCGAC 240
Query 288 GGTTACCAAAACGCAGCGTTAGCGTCGCGTTTGGGAATCCCGATCATCTATGGCATTGAC 347
||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||
Sbjct 241 GGTTACCAAAACGCAGCGTTAGCGTCGCGCTTAGGAATTCCGATCATCTATGGCATTGAT 300
Query 348 GCCGTCCACGGTAACAACAACGTCTACGGAGCCACTATCTTTCCCCACAACATCGGCCTC 407
|| ||||| || |||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 301 GCTGTCCATGGCAACAACAATGTCTACGGAGCCACTATCTTTCCCCACAACATAGGCCTC 360
Query 408 GGAGCCACCAG 418
|||||||||||
Sbjct 361 GGAGCCACCAG 371
Score = 427 bits (231), Expect = 1e-118
Identities = 368/429 (86%), Gaps = 29/429 (7%)
Strand=Plus/Plus
Query 468 AACAAAGTGGTTGTTAAATGTGATAGAGACGCAGATTTGATAAGAAGAGTCGGGGCAGCA 527
||||||||||||||||||||||||||||| ||||||||||| |||||| | |||||||||
Sbjct 382 AACAAAGTGGTTGTTAAATGTGATAGAGATGCAGATTTGATCAGAAGAATTGGGGCAGCA 441
Query 528 ACAGCACTTGAAGTAAGAGCTTGTGGCGCTCATTGGGCGTTTGCTCCATGCGTGGCCACG 587
|| ||||||||||||||||| | |||||||||||||||||||||||||||||||| | ||
Sbjct 442 ACCGCACTTGAAGTAAGAGCGTCTGGCGCTCATTGGGCGTTTGCTCCATGCGTGG-C-CG 499
Query 588 TCTATACAAGGAAGAATTCCTAACAAGAAAATCAAGAAAATATATATGAGGAAGGAATTG 647
|| | | | || | | | | | | || | || ||||| | | | ||
Sbjct 500 -CT-T-TGA-G-AG-A-T-C---C--G-AGATGGGGGCGAT-CCTATGA-G-A-G--TT- 538
Query 648 AAATGTGAAGATCCTGACATTATTTGTGAGTTGAGTTCGCTTGTCTCGGGCCTACAAGGC 707
| | |||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 539 ACA-GTGAAGATACTGACATTATTTGTGAGTTGAGTACGCTTGTCTCGGGTCTACAAGGC 597
Query 708 GAGCCACCTAAAGAACATCCTAATGGTTACCCTTTTCTTGCAGGAAGAAACAACGTGGTC 767
|||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 598 GAGCCACCCAAAGAACATCCTAATGGCTACCCTTTTCTTGCAGGAAGAAACAATGTGGTA 657
Query 768 GCATGTGCTAAGCATTTTGTTGGAGATGGTGGTACCGATAAGGGCATAAACGAAGGGAAC 827
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 GCGTGCGCTAAGCATTTTGTTGGAGATGGTGGTACCGATAAGGGCATAAACGAAGGGAAC 717
Query 828 ACTATTGTGTCATACGAAGAGTTGGAGAAAATACATCTTGCACCATATCTGAATTGTCTT 887
|| ||||||||||||||||||||||| | ||||||||||||||| |||||||||||
Sbjct 718 ACCATTGTGTCATACGAAGAGTTGGAT----T-CATCTTGCACCATATTTGAATTGTCTT 772
Query 888 GCTCAAGGA 896
||||| |||
Sbjct 773 GCTCAGGGA 781
> Ahg323329 jgi|Araly1|323329|fgenesh1_pm.C_scaffold_5000873
Length=1821
Score = 1291 bits (699), Expect = 0.0
Identities = 1128/1332 (85%), Gaps = 41/1332 (3%)
Strand=Plus/Plus
Query 652 GTGAAGATCCTGACATTATTTGTGAGTTGAGTTCGCTTGTCTCGGGCCTACAAGGCGAGC 711
|||||| | || | ||| |||||||| ||||||||||| |||||||||||||||||||||
Sbjct 509 GTGAAGCTGCTAAAATTGTTTGTGAGATGAGTTCGCTTATCTCGGGCCTACAAGGCGAGC 568
Query 712 CACCTAAAGAACATCCTAATGGTTACCCTTTTCTTGCAGGAAGAAACAACGTGGTCGCAT 771
|||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 569 CACCCGAAGAACACCCTAACGGTTACCCTTTTCTTGCAGGAAGAAACAACGTGGTCGCGT 628
Query 772 GTGCTAAGCATTTTGTTGGAGATGGTGGTACCGATAAGGGCATAAACGAAGGGAACACTA 831
||||||| || |||||||||||||||||||||||||||||| ||| ||| |||||||| |
Sbjct 629 GTGCTAAACACTTTGTTGGAGATGGTGGTACCGATAAGGGCTTAAGCGAGGGGAACACCA 688
Query 832 TTGTGTCATACGAAGAGTTGGAGAAAATACATCTTGCACCATATCTGAATTGTCTTGCTC 891
| | ||||| ||||| ||||||||||| ||| |||| || ||||| |||||| ||||||
Sbjct 689 TAGCATCATATGAAGACTTGGAGAAAATTCATGTTGCTCCCTATCTTAATTGTATTGCTC 748
Query 892 AAGGAGTCTCTACAGTTATGGCCTCTTACTCCAGTTGGAACGGAAGTAAACTCCATTCTG 951
| ||||| | ||| ||||||||||||| ||||||||||||| ||||| |||||| || |
Sbjct 749 AGGGAGTGTGTACCGTTATGGCCTCTTTTTCCAGTTGGAACGAAAGTAGACTCCACTCCG 808
Query 952 ACTATTTCCTCTTAACCGAACTTCTCAAACAGAAACTCGGTTTTAAGGGATTTGTCA-TT 1010
||||||||||||| || ||| ||||||| |||||||||||||||||||||||| | | ||
Sbjct 809 ACTATTTCCTCTTGACGGAAGTTCTCAAGCAGAAACTCGGTTTTAAGGGATTTCT-AGTT 867
Query 1011 TCAGACTGGGAAGCTTTGGA-ACGGCTAAGCGAGCCATTCGGTTCAAACTACCGCAACTG 1069
||||||||||| | |||||| ||| || |||||||| |||||||||||||| |||||
Sbjct 868 TCAGACTGGGATGGTTTGGAGACGATTA-GCGAGCCAGAAGGTTCAAACTACCGTAACTG 926
Query 1070 CGTCAAAATCTC-AGTTAATGCTGGAGTT-GACATGGTGATGGTGCCTTTCAAGTATGAA 1127
| ||||| || | |||||||||| | | |||||||||||||| ||||||||||| |||
Sbjct 927 CATCAAACTCGGGA-TTAATGCTGG-GATCGACATGGTGATGGTACCTTTCAAGTACGAA 984
Query 1128 CAGTTTATAAAGGACCTCACAGAT-TTGGTGGAGTCAGGGGAAGTAACTATGTCTCGGAT 1186
||||| ||| ||||| | |||||| ||| |||||||||| ||| || | ||| ||||| |
Sbjct 985 CAGTTCATACAGGACATGACAGATCTTG-TGGAGTCAGGAGAAATACCGATGGCTCGGGT 1043
Query 1187 TGATGATGCTGTTGAGAGAATACTCAGGGTGAAGTTTGTTGCGGGTCT-TTTCGAACATC 1245
|||||||||||||||||||||| || |||||||||||||||||||| ||| |||||||
Sbjct 1044 CAATGATGCTGTTGAGAGAATACTTAGAGTGAAGTTTGTTGCGGGTCTCTTT-GAACATC 1102
Query 1246 CTCTCACGGACCGGTCTTTATTGGGTACCGTTGGCTGCAAGGAGCATAGAGAACTAGCGC 1305
|| || ||||||| ||||| ||||| || |||||||||||| || | | |||| |
Sbjct 1103 CTTTCTCGGACCGATCTTTGTTGGGAACTGTTGGCTGCAAG-AG-A--G-----TAGCAC 1153
Query 1306 GTGAATCGGTTAGAAAGTCGTTAGTTCTGCTAAAGAACGGGACAAATTCTGAGA-AGCCA 1364
||||| |||||||||||||||||||| |||| ||||| || | |||| || | | | |||
Sbjct 1154 GTGAAGCGGTTAGAAAGTCGTTAGTTTTGCTTAAGAATGGTAAAAATGCTAATACA-CCA 1212
Query 1365 TTTCTGCCACTAGATCGCAATGTCAA-GAGAATTCTAGTCACTGGGACACACGCAGACGA 1423
|||||||||||||| || |||| ||| ||| |||||||| ||| | || ||| ||||
Sbjct 1213 TTTCTGCCACTAGACCGTAATG-CAAAGAGGATTCTAGTTGTTGGAATGCATGCAAACGA 1271
Query 1424 TCTTGGATATCAGTGCGGGGGATGGACAAAGGCATGGTTTGGTCTAAGCGGCAGGATCAC 1483
||||||| ||||||| || |||||||||||| || | ||||| ||||||||| |||||
Sbjct 1272 TCTTGGAAATCAGTGTGGAGGATGGACAAAGACAAAATCTGGTCAAAGCGGCAGAATCAC 1331
Query 1484 AATCGGGACAACGCTTTTGGACGCCATTAAAGAAGCAGTTGGAGACAAGACCGAAGTGAT 1543
||| || || ||||||||||| ||||| |||| ||||||||||||||| |||||||||||
Sbjct 1332 AATTGGCACGACGCTTTTGGATGCCATAAAAGCAGCAGTTGGAGACAAAACCGAAGTGAT 1391
Query 1544 CTACGAGAAGACTCCTTCAGAAGAAACTTTAGCCTCGT-TACAACGCTTCTCCTACGCCA 1602
||||||||| ||||| || ||||||| ||||||||| | || ||||||||||||| |
Sbjct 1392 CTACGAGAAAACTCCAACAAAAGAAACCTTAGCCTCGAGTG-AAGGCTTCTCCTACGCTA 1450
Query 1603 TTGTTGCAGTGGGGGAAACTCCCTACGCAGAGAC-ATTGGGAGATAACTCGGAACTCACA 1661
| |||||||||||||| ||||||||||||||| | ||| ||||||||||||||||||
Sbjct 1451 TCGTTGCAGTGGGGGAGCCTCCCTACGCAGAGATGAA-GGGCGATAACTCGGAACTCACA 1509
Query 1662 ATACCATTAAACG-GTAACGACATTGTAACTGCA-TTAGCAGAGAAAATCCCGACTCTAG 1719
||||| || || | ||||| ||||| |||| || || ||||||||||||||||||||||
Sbjct 1510 ATACCTTTCAA-GAGTAACAACATTATAACCGCGGTT-GCAGAGAAAATCCCGACTCTAG 1567
Query 1720 TGGTCTTGTTCTCAGGACGGCCTTTGGTTCTTG-AGCCG-CTGGTTCTTGAAAAGGCTGA 1777
|| |||| ||||||||||| ||| ||||| ||| |||| | ||||||||||||| | ||
Sbjct 1568 TGATCTTATTCTCAGGACGTCCTATGGTT-TTGGAGCCAAC-GGTTCTTGAAAAGACCGA 1625
Query 1778 GGCTCTGGTCGCTGCTTGGCTTCC-TGGAACGGAAGGGCAAGGGATGACTGATGTCATAT 1836
|||| |||||||||||||| |||| |||||| |||||||||||||| ||||||||||| |
Sbjct 1626 GGCTTTGGTCGCTGCTTGG-TTCCCTGGAACCGAAGGGCAAGGGATTACTGATGTCATTT 1684
Query 1837 TTGGAGATTATGACTTTGAGGGGAAGTTACCAGTGAGCTGGTTCAAACGCGTTGACCAGT 1896
||||| |||||||||| | |||||||||||||||||||||||||||||||| |||||||
Sbjct 1685 TTGGAAATTATGACTTCAAAGGGAAGTTACCAGTGAGCTGGTTCAAACGCGTAGACCAGT 1744
Query 1897 TGCCGTTAACCGCTGATGCTAATTCATATGATCCATTGTTTCCTCTTGGTTTTGGTCTCA 1956
||||| ||| ||||||||| |||| ||||| |||||||||||| ||||||| |||||||
Sbjct 1745 TGCCGCTAAACGCTGATGCCGATTCGTATGACCCATTGTTTCCTATTGGTTTCGGTCTCA 1804
Query 1957 ACTAC-AATTCC 1967
|| | ||||||
Sbjct 1805 -CTTCCAATTCC 1815
Score = 363 bits (196), Expect = 4e-99
Identities = 305/357 (85%), Gaps = 10/357 (3%)
Strand=Plus/Plus
Query 67 CATGCGTTTACAAGAACAAAGACGCGCCAGTGGAGGCGCGTGTAAAGGACCTTCTCTCTC 126
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 23 CATGCGTTTACAAGAACGGAGACGCGCCAGTGGAGGCGCGTGTAAAGGACCTTCTCTCTC 82
Query 127 GCATGACTCTGCCGGAAAAGATCGGCCAGATGACTCAGATCGAACGCGTC-GTCACTACT 185
|||||||| ||||||| ||||| || |||||||||||||| |||||| || ||| || ||
Sbjct 83 GCATGACTTTGCCGGAGAAGATTGGTCAGATGACTCAGATAGAACGC-TCCGTCGCTTCT 141
Query 186 CCTCCTGTCATTACAGATAACTT-CATCGGTAGTGTATTGAACGGTGGAGGAAGTTGGCC 244
|||| ||||||||| || ||| |||||| |||||| || ||| | |||||||||||
Sbjct 142 CCTCAAGTCATTACACATT-CTTTCATCGGCAGTGTACAGAGCGGCGCCGGAAGTTGGCC 200
Query 245 GTTCGAGGACGCTAAGA-CGTCGGATTGGGCTGATATGATCGACGGTTACCAAAACG--C 301
||||||| |||| || | | ||||||||||| |||||||||||| ||| || || |
Sbjct 201 GTTCGAGAACGCCAA-ATCATCGGATTGGGCGGATATGATCGACAGTTTTCAG--CGTTC 257
Query 302 AGCGTTAGCGTCGCGTTTGGGAATCCCGATCATCTATGGCATTGACGCCGTCCACGGTAA 361
|||||||||||||||||||||||| ||||| || || |||| ||||||||| || || ||
Sbjct 258 AGCGTTAGCGTCGCGTTTGGGAATTCCGATAATATACGGCACTGACGCCGTTCATGGCAA 317
Query 362 CAACAACGTCTACGGAGCCACTATCTTTCCCCACAACATCGGCCTCGGAGCCACCAG 418
||||||||||||||| |||||| |||| ||||||||||| || |||||||| |||||
Sbjct 318 CAACAACGTCTACGGTGCCACTGTCTTCCCCCACAACATTGGTCTCGGAGCTACCAG 374
> Ahg485079 jgi|Araly1|485079|fgenesh2_kg.5__1071__AT3G47000.1
Length=2011
Score = 1262 bits (683), Expect = 0.0
Identities = 1229/1486 (83%), Gaps = 64/1486 (4%)
Strand=Plus/Plus
Query 492 AGAGACGCAGATTTGATAAGAAGAGTCGGGGCAGCAACAGCACTTGAAGTAAGAGCTTGT 551
||||||||||||||| |||||||| | || || ||||| ||||||||| ||||||| |
Sbjct 389 AGAGACGCAGATTTGGTAAGAAGAATTGGAGCTGCAACTGCACTTGAAATAAGAGCGAGC 448
Query 552 GGCGCTCATTGGGCGTTTGCTCCATGCGTGGCCACGTCTATACAAGGAAGAATTCCTAAC 611
|| |||||||||||||||||||| ||||||| | ||| | | | | || | | | |
Sbjct 449 GGGGCTCATTGGGCGTTTGCTCCTTGCGTGG-C-CGT-T-T-TGA-G-AG-A-T-C---C 495
Query 612 AAGAAAATCAAGAAAATATATATGAGGAAGGAATTGAAAT-GTGAAGATCCT-GACATTA 669
| | || || || ||||| | | | || || | ||||||||| ||| ||
Sbjct 496 --G-AGATGGGGACGAT-GCTATGA-G-A-G--TT---ATGGAGAAGATCCTGGAC-TTG 542
Query 670 TTTGTGAGTTGAGTTCGCTTGTCTCGGGCCTACAAGGCGAGCCACCTA-AAGAACATCCT 728
| |||||| ||| ||||||||||||||| |||||||||| |||||| | ||||||| ||
Sbjct 543 TCTGTGAGATGACTTCGCTTGTCTCGGGACTACAAGGCGTGCCACC-AGAAGAACACCCA 601
Query 729 AATGGTTACCCTTTTCTTGCAGGAAGAAACAACGTGGTCGCATGTGCT-AAGCATTTTGT 787
|||||||| |||||| |||| ||||||||||| || ||||| |||| | || || |||||
Sbjct 602 AATGGTTATCCTTTTGTTGCGGGAAGAAACAATGTCGTCGCGTGTG-TCAAACACTTTGT 660
Query 788 TGGAGATGGTGGTACCGATAAGGGCATAAACGAAGGGAACACTATTGTGTCATACGAAGA 847
|||||||||||||||||| |||||| |||||||||||||||| |||| |||||| |||||
Sbjct 661 TGGAGATGGTGGTACCGACAAGGGCGTAAACGAAGGGAACACCATTGCGTCATATGAAGA 720
Query 848 GTTGGAGAAAATACATC-TTGCACCATATCTGAATTGTCTTGCTCAAGGAGTCTCTACAG 906
|| ||||| ||||| | || | ||||||||||| ||||||||||| |||||||| || |
Sbjct 721 CTTAGAGAAGATACA-CATTCCTCCATATCTGAACTGTCTTGCTCAGGGAGTCTCCACGG 779
Query 907 TTATGGCCTCTTACTCCAGTTGGAACGGAAGTAAACTCCATTCTGACTATTTCCTCTTAA 966
||||||| ||||||||||||||||| |||| || ||| || |||||| ||| ||||| |
Sbjct 780 TTATGGCATCTTACTCCAGTTGGAATGGAACTAGACTTCACGCTGACTGTTTTCTCTTGA 839
Query 967 CCGAACTTCTCAAA-CAGAAACTCGGTTTTAAGGGATTTGTCA-TTTCAGACTGGGAAGC 1024
| ||| |||| ||| | ||||||||||| ||||||||| | | | |||||||||||||
Sbjct 840 CAGAAATTCT-AAAGGAAAAACTCGGTTTCAAGGGATTTCT-AGTCTCAGACTGGGAAGG 897
Query 1025 TTTGGAACGGCTAAGCGAGCCATTC--GGTTCAAACTACCGCAACTGCGTCAAAATCT-C 1081
|||||| ||||| || ||||| || || ||||||||||| ||||| | |||| || |
Sbjct 898 TTTGGACCGGCTTAGTGAGCC--TCAGGGATCAAACTACCGTTACTGCATTAAAA-CTGC 954
Query 1082 AGTTAATGCTGG-AGTTGACATGGTGATGGTGCCTTTCAAGTATGAACAGTTTATAAAGG 1140
||||||||||| | |||||||||| ||||| || |||||||| |||||||| ||| |||
Sbjct 955 GGTTAATGCTGGCA-TTGACATGGTTATGGTACCATTCAAGTACGAACAGTTCATACAGG 1013
Query 1141 ACCTCACAGATTTGGTGGAGTCAGGGGAAGTAACTATGTCTCGGATTGATGATGCTGTTG 1200
|| | |||||| |||| |||||||||||| || | ||| |||| | ||||||||||||
Sbjct 1014 ACATGACAGATCTGGTAGAGTCAGGGGAAATATCCATGGATCGGGTCAATGATGCTGTTG 1073
Query 1201 AGAGAATACTCAGGGTGAAGTTTGTTGCGGGTCTTTTCGAACATCCTCTCACGGACCGGT 1260
| |||||| |||| ||||| ||||| || ||||| |||||| |||||||||| || || |
Sbjct 1074 AAAGAATAGTCAGAGTGAAATTTGTCGCTGGTCTCTTCGAATATCCTCTCACAGATCGAT 1133
Query 1261 CTTTATTGGGTACCGTTGGCTGCAAGGAGCATAGAGAACTAGCGC-GTGAATCGGTTAGA 1319
| || || || ||||| |||||||| ||||||||| | |||| | ||| | ||||||
Sbjct 1134 CATTGTTACCTATTGTTGGTTGCAAGGAACATAGAGAATTGGCGCAG-GAAGCAGTTAGA 1192
Query 1320 AAGTCGTTAGTTCTGCTAAAGAACGGGACAAATTCTGAGAAGCCATTTCTGCCACTAGAT 1379
||||||||||||||||||||||| || | |||| |||| || ||||||||||||||||||
Sbjct 1193 AAGTCGTTAGTTCTGCTAAAGAATGGCAAAAATGCTGATAAACCATTTCTGCCACTAGAT 1252
Query 1380 CGCAATGTCAAGAGAATTCTAGTCACTGGGACACACGCAGACGATCTTGGATATCAGTGC 1439
||| | | |||||| |||||||||||||| || |||||||| ||||||||||||||||||
Sbjct 1253 CGCCACGCCAAGAGGATTCTAGTCACTGGAACTCACGCAGATGATCTTGGATATCAGTGC 1312
Query 1440 GGGGGATGGACAAAGGCATGGTTTGGTCTAAGCGGCAGGATCACAATCGGGACAACGCTT 1499
|| |||||||||||| ||||||| |||||||||||||||||||||||||| || ||||||
Sbjct 1313 GGAGGATGGACAAAGACATGGTTCGGTCTAAGCGGCAGGATCACAATCGGCACGACGCTT 1372
Query 1500 TTGGACGCCATTAAAGAAGCAGTTGGAGAC-AAGACCGAAGTGATCTACGAGAAGACTCC 1558
|||||||||||||||||||||||||||||| || || ||||| ||||| ||||| |||||
Sbjct 1373 TTGGACGCCATTAAAGAAGCAGTTGGAGACGAA-ACTGAAGTAATCTATGAGAAAACTCC 1431
Query 1559 TTCAGAAG-AAACTTTAGCCTC--GTTACAACGCTTCTCCTACGCCATTGTTGCAGTGGG 1615
||| ||| |||| |||||||| || | | | ||||| ||||||||||||||||| ||
Sbjct 1432 ATCA-AAGGAAACCTTAGCCTCAAGTGA-AG-GATTCTCTTACGCCATTGTTGCAGTCGG 1488
Query 1616 GGAAACTCCCTACGCAGAGAC-ATTGGGAGATAACTCGGAACTCACAATACCATTAAACG 1674
|||| | ||||| |||||||| || ||| |||||||||||||||| |||| |||| || |
Sbjct 1489 GGAACCGCCCTATGCAGAGACGATGGGG-GATAACTCGGAACTCAAAATATCATTTAATG 1547
Query 1675 GTAACGACATTGTAACTGCATTAGCAGAGAAAATCCCGACTCTAGTGGTCTTGTTCTCAG 1734
||| ||||||||||||||| ||||||||| |||||||||||| ||| ||||| ||||||
Sbjct 1548 GTAGCGACATTGTAACTGCGGTAGCAGAGATAATCCCGACTCTGGTGATCTTGATCTCAG 1607
Query 1735 GACGGCCTTTGGTTCTTGAGCCG-CTGGTTCTTGAAAAGGCTGAGGCTCTGGTCGCTGCT 1793
|||| ||| ||||||| |||||| | ||||||||||||| | ||||||||||||||||||
Sbjct 1608 GACGACCTGTGGTTCTGGAGCCGAC-GGTTCTTGAAAAGACAGAGGCTCTGGTCGCTGCT 1666
Query 1794 TGGCTTCCTGGAACGGAAGGGCAAGGGATGACTGATGTCATATTTGGAGATTATGACTTT 1853
||||| |||||||| ||||||||||||||| |||| || || |||||||||||||||||
Sbjct 1667 TGGCTGCCTGGAACAGAAGGGCAAGGGATGGCTGACGTTATTTTTGGAGATTATGACTTC 1726
Query 1854 GAGGGGAAGTTACCAGTGAGCTGGTTCAAACGCGTTGACCAGTTGCCGTTA-ACCGCTGA 1912
||||||||||||||||||| ||||||||||| ||||| || ||||| || | ||| |
Sbjct 1727 AAGGGGAAGTTACCAGTGAGTTGGTTCAAACGTGTTGAGCATTTGCCACTAGAT-GCTCA 1785
Query 1913 TG-CTAATTCATATGATCCATTGTTTCCTCTTGGTTTTGGTCTCAA 1957
| | ||||| ||||| |||||||| ||| ||||||| ||||||||
Sbjct 1786 -GACCAATTCGTATGACCCATTGTTCCCTTTTGGTTTCGGTCTCAA 1830
Score = 379 bits (205), Expect = 4e-104
Identities = 308/357 (86%), Gaps = 10/357 (3%)
Strand=Plus/Plus
Query 67 CATGCGTTTACAAGAACAAAGACGCGCCAGTGGAGGCGCGTGTAAAGGACCTTCTCTCTC 126
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 39 CATGCGTTTACAAGAACCAAGACGCGCCAGTGGAGGTGCGTGTAAAGGACCTTCTCTCTC 98
Query 127 GCATGACTCTGCCGGAAAAGATCGGCCAGATGACTCAGATCGAACGC-GTCGTCACTACT 185
|||||||| ||||||| |||||||| ||||||||||| ||||||||| | ||| || ||
Sbjct 99 GCATGACTTTGCCGGAGAAGATCGGTCAGATGACTCAAATCGAACGCAGA-GTCGCTTCT 157
Query 186 C-CTCCTGTCATTACAGATAACTTCATCGGTAGTGTATTGAACGGTGGAGGAAGT-TGGC 243
| | || | | |||||||| ||||||||| |||||||| |||| ||||| ||| || |
Sbjct 158 CACGCC-GCCTTTACAGATTTCTTCATCGGAAGTGTATTAAACGCCGGAGGGAGTGTG-C 215
Query 244 CGTTCGAGGACGCTAAGACGTCGGATTGGGCTGATATGATCGACGGTTACCAAAACG--C 301
|||| ||||| |||||| |||||||||||||||||||||||||| ||| || || |
Sbjct 216 CGTTTGAGGATGCTAAGTCGTCGGATTGGGCTGATATGATCGACAGTTTTCAG--CGTTC 273
Query 302 AGCGTTAGCGTCGCGTTTGGGAATCCCGATCATCTATGGCATTGACGCCGTCCACGGTAA 361
|||||||||||||||||||||||| || |||||||| || | |||||| |||||||| ||
Sbjct 274 AGCGTTAGCGTCGCGTTTGGGAATTCCAATCATCTACGGTACTGACGCTGTCCACGGGAA 333
Query 362 CAACAACGTCTACGGAGCCACTATCTTTCCCCACAACATCGGCCTCGGAGCCACCAG 418
|||||| |||||||| ||||| |||| ||||||||||| |||||||||||||||||
Sbjct 334 CAACAATGTCTACGGCGCCACCGTCTTCCCCCACAACATTGGCCTCGGAGCCACCAG 390
> Ahg485082 jgi|Araly1|485082|fgenesh2_kg.5__1074__AT3G47050.1
Length=1905
Score = 1151 bits (623), Expect = 0.0
Identities = 1091/1312 (83%), Gaps = 52/1312 (4%)
Strand=Plus/Plus
Query 666 ATTATTTGTGAGTTGAGTTCGCTTGTCTCGGGCCTACAAGGCGAGCCA-CCTAAAGAACA 724
||| ||| |||| ||| ||| |||||||| || ||||||||||||||| || ||||||||
Sbjct 547 ATTGTTTCTGAGATGACTTCACTTGTCTCAGGTCTACAAGGCGAGCCATCC-AAAGAACA 605
Query 725 TC-CTAATGGTTACCCTTTTCTTGCAGGAAGAAACAACGTGGTCGCATGTGCTAAGCATT 783
| ||| ||||||||||||| |||||||||||| |||||||| || ||||| ||||| |
Sbjct 606 -CACTAGCGGTTACCCTTTTCATGCAGGAAGAAAAAACGTGGTTGCGTGTGCCAAGCACT 664
Query 784 TTGTTGGAGATGGTGGTACCGATAAGGGCATAAACGAAGGGAACACTATTGTGTC-ATAC 842
|||||||||| |||||||||||||||| |||||| ||||| ||||| ||| || | ||
Sbjct 665 TTGTTGGAGACGGTGGTACCGATAAGGCCATAAATGAAGGAAACACCATTTTG-CGGTAT 723
Query 843 GAAGAGTTGGAGA--AAATACATCTTGCACCATATCTGAATTGTCTTGCTCAAGGAGTCT 900
||||| ||||||| ||| ||| |||| || ||| ||| ||| || ||||||||||||
Sbjct 724 GAAGACTTGGAGAGGAAACACA--TTGCTCCCTATAAGAAATGTATTTCTCAAGGAGTCT 781
Query 901 CTACAGTTATGGCCTCTTACTCCAGTTGGAACGGAAG-TAAACTCCATTCTGACTATTTC 959
|||| ||||||| ||||||||| ||||||||||| || ||||||||| || ||||||||
Sbjct 782 CTACCGTTATGGTCTCTTACTCTAGTTGGAACGG-AGATAAACTCCACTCCCACTATTTC 840
Query 960 CTCTTAACCGAACTTCTCAAACAGAAACTCGGTTTTAAGGGATTTGTCA-TTTCAGACTG 1018
|||||||| ||| |||||||||| ||||||||||| | ||||| | | | | ||||||||
Sbjct 841 CTCTTAACGGAAGTTCTCAAACAAAAACTCGGTTTCAGGGGATATAT-AGTCTCAGACTG 899
Query 1019 GGAAGCTTTGGAACGGCTAAGCGAGCCATTC-GGTTCAAACTACCGCAACTGCGTCAAAA 1077
||||| |||||| ||||| ||||| ||| | ||||||||||||||||||||||||||||
Sbjct 900 GGAAGGTTTGGACCGGCTTAGCGACCCA-CCAGGTTCAAACTACCGCAACTGCGTCAAAA 958
Query 1078 TCTC-AGTTAATGCTGGAGTTGACATGGTGATGGTGCCTTTCAAGTATGAACAGTTTATA 1136
| | ||||||||||| | || ||||||||||| ||||||||||||||| |||| |||
Sbjct 959 TGGGGA-TTAATGCTGGAATCGATATGGTGATGGTACCTTTCAAGTATGAAAAGTTCATA 1017
Query 1137 AAGGACCTCACAGATTTGGTGGAGTCAGGGGAAGTAACT-ATGTCTCG-GATTGATGATG 1194
|| ||||| | |||| |||||||||||||||||||| | ||| |||| | ||||||| |
Sbjct 1018 AACGACCTGATAGATCTGGTGGAGTCAGGGGAAGTAT-TGATGGCTCGTG-TTGATGACG 1075
Query 1195 CTGTTGAGAGAATACTCAGGGTGAAGTTTGTTGCGGGTCTTTTCGAACATCCTCTCACGG 1254
||||||| ||||||||||| |||||||||||||| || || |||||| ||||||||| |
Sbjct 1076 CTGTTGAAAGAATACTCAGAGTGAAGTTTGTTGCAGGACTCTTCGAATTTCCTCTCACAG 1135
Query 1255 ACCGGTCTTTATTGGGTACCGTTGGCTGCAAGGAGCATAGAGAACTAGCGCGTGAATCGG 1314
| || || || || || ||||| |||||||| ||||||||| | ||||||||| | |
Sbjct 1136 ATCGATCATTGTTACCTATTGTTGGTTGCAAGGAACATAGAGAATTGGCGCGTGAAGCTG 1195
Query 1315 TTAGAAAGTCGTTAGTTCTGCTAAAGAACGGGACAAATTCTGAGAAGCCATTTCTGCCAC 1374
||||||||||| ||||||||||||||||||| ||||| || || | ||||||||||
Sbjct 1196 TTAGAAAGTCGCTAGTTCTGCTAAAGAACGG--CAAATA-TG-GA-GA-ATTTCTGCCAT 1249
Query 1375 TAGATCGCAATGTCAAGAGAATTCTAGTCACTGGGACACACGCAGACGATCTTGGATATC 1434
|| || |||||| | ||||||||||||| ||| || || ||||| |||||||||||||
Sbjct 1250 TAAATTGCAATGCCGAGAGAATTCTAGTGGTTGGAACGCATGCAGATGATCTTGGATATC 1309
Query 1435 AGTGCGGGGGATGGACAAAGGCA-TGGTTTGGTCTAAGCGGCAGGATCACA-ATCGGGAC 1492
| ||||| |||||||||||| || || | ||||| |||||| ||||||||| || || ||
Sbjct 1310 AATGCGGTGGATGGACAAAGACAATG-TATGGTCAAAGCGGAAGGATCACAGAT-GGCAC 1367
Query 1493 AACGCTTTTGGACGCCATTAAAGAAGCAGTTGGAGACAAGACCGAAGTGATCTACGAGAA 1552
||||||||| || || || |||| |||||||||||||| |||||||||||||| |||||
Sbjct 1368 AACGCTTTTAGATGCAATAAAAGCGGCAGTTGGAGACAAAACCGAAGTGATCTATGAGAA 1427
Query 1553 GACTCCTTCAGAAGAAACTTTAGCCTC-GT-TACAACGCTTCTCCTACGCCATTGTTGCA 1610
| ||| ||||| ||||| |||||||| | || | | || || || || ||||||||
Sbjct 1428 AAATCCATCAGAGGAAACCTTAGCCTCAGGATATA--GATTTTCTTATGCAATTGTTGCG 1485
Query 1611 GTGGGGGAAACTCCCTACGCAGAGAC-ATTGGGAGATAACTCGGAACTCACAATACCATT 1669
||||||||| | ||||| | |||||| || ||| |||||||| |||||||||||||| ||
Sbjct 1486 GTGGGGGAATCACCCTATGTAGAGACTATGGGG-GATAACTCAGAACTCACAATACCTTT 1544
Query 1670 AAACGGTAACGACATTGTAACTGCA-TTAGCAGAGAAAATCCCGACTCTAGTGGTCTTGT 1728
||||||| ||| ||| |||| || || |||||||||||||||||||||||| ||||||
Sbjct 1545 TAACGGTAGCGAGATTATAACCGCGGTT-GCAGAGAAAATCCCGACTCTAGTGATCTTGT 1603
Query 1729 TCTCAGGACGGCCTTTGGTTCTTGAGCCGCTGGTTCTTGAAAAGGCTGAGGCTCTGGTCG 1788
|||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1604 TCTCAGGACGGCCTATGGTTCTTGAGCCGCAAGTTCTTGAAAAGGCAGAGGCTCTGGTCG 1663
Query 1789 CTGCTTGGCTTCCTGGAACGGAAGGGCAAGGGAT-GACTGATGTCATATTT-GGAGATTA 1846
|||||||||| ||||| || ||||| |||||||| | ||||||| || ||| ||||||||
Sbjct 1664 CTGCTTGGCTGCCTGGTACTGAAGGACAAGGGATTG-CTGATGTAAT-TTTCGGAGATTA 1721
Query 1847 TGACTTT-GAGGGGAAGTTACCAGTGAGCTGGTTCAAACGCGTTGACCAGTTGCCG-TTA 1904
||| || ||||| |||||||||| ||||||||||||||| || |||||||||||| ||
Sbjct 1722 TGAGTTCCGAGGG-AAGTTACCAGCGAGCTGGTTCAAACGTGTAGACCAGTTGCCGCTTG 1780
Query 1905 ACCGCTGA-TGCTAATTCATATGATCC-ATTGTTTCCTCTTGGTTTTGGTCT 1954
|| ||| | | ||| ||| ||| ||||||||||||||||||||||||
Sbjct 1781 ACAT-TGAAT-CAAATGGGTATC-TCCCATTGTTTCCTCTTGGTTTTGGTCT 1829
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77132746125
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5