BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G47050.1
Length=1928
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485082 jgi|Araly1|485082|fgenesh2_kg.5__1074__AT3G47050.1 2883 0.0
Ahg485079 jgi|Araly1|485079|fgenesh2_kg.5__1071__AT3G47000.1 1594 0.0
Ahg323329 jgi|Araly1|323329|fgenesh1_pm.C_scaffold_5000873 1445 0.0
Ahg485080 jgi|Araly1|485080|fgenesh2_kg.5__1072__AT3G47040.1 763 0.0
> Ahg485082 jgi|Araly1|485082|fgenesh2_kg.5__1074__AT3G47050.1
Length=1905
Score = 2883 bits (1561), Expect = 0.0
Identities = 1795/1909 (94%), Gaps = 11/1909 (1%)
Strand=Plus/Plus
Query 9 aagaagaagagaaagaggaagaaAATGGTTGACAATGAGAA---GTCATATGTTTACAAG 65
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1 AAGAAGAAGAGAAAGAGGAAGAAAATGGTTGACAATGAGAAGTCGTCATGTGTTTACAAG 60
Query 66 AACCGGGAAGCGCCAGTGGAGGCGCGTGT-AAAGGACCTTCTCTCTCGGATGACTCTGGC 124
||||| || |||||||||||||||||||| ||| |||||||||||||||||||||||| |
Sbjct 61 AACCGCGACGCGCCAGTGGAGGCGCGTGTGAAA-GACCTTCTCTCTCGGATGACTCTGCC 119
Query 125 TGAAAAAATCGGCCAGATGACTTTGATCGAACGTAGCGTCGCTTCTGAGGCCGTGATAAG 184
||| ||||||||||||||||||||||||||||| || || |||||||||||||| || ||
Sbjct 120 TGAGAAAATCGGCCAGATGACTTTGATCGAACGCAGTGTGGCTTCTGAGGCCGTCATTAG 179
Query 185 AGATTTCTCCATCGGTAGTGTATTGAACCG-CGCAGGAGGTTGGCCATTTGAGGATGCAA 243
|||||||||||||||||||||| |||| || ||||||| |||||||||| ||||||||||
Sbjct 180 AGATTTCTCCATCGGTAGTGTACTGAA-CGCCGCAGGAAGTTGGCCATTCGAGGATGCAA 238
Query 244 AGTCGTCGAATTGGGCGGATATGATCGACGGCTTCCAGCGATCAGCGTTAGAGTCGCGTT 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 AGTCGTCGAATTGGGCGGATATGATCGACGGCTTCCAGCGATCAGCGTTAGAGTCGCGTT 298
Query 304 TGGGAATTCCGATAATTTACGGCATTGACGCTGTTCATGGCAACAATGACGTCTACGGCG 363
|||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 299 TGGGAATTCCCATAATTTACGGCATTGACGCCATTCATGGCAACAATGACGTCTATGGCG 358
Query 364 CCACCATCTTTCCCCACAATATTGGTCTCGGCGCCACTAGAGACGCGGATTTGGTCAAAA 423
|||||||||| |||||||| ||||||||||||||||| ||||| || |||||||||||||
Sbjct 359 CCACCATCTTCCCCCACAACATTGGTCTCGGCGCCACCAGAGATGCAGATTTGGTCAAAA 418
Query 424 GAATTGGAGCTGCAACAGCACTTGAAGTAAGGGCGTGCGGTGCTCACTGGGCGTTTGCTC 483
|||||||||||||||||||||||||||| |||||| |||||| ||||||| |||||||||
Sbjct 419 GAATTGGAGCTGCAACAGCACTTGAAGTTAGGGCGAGCGGTGTTCACTGGTCGTTTGCTC 478
Query 484 CTTGCGTCGCAGTGGTGAAAGATCCGAGATGGGGAAGATGCTATGAGAGCTATGGTGAAG 543
| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 479 CATGCGTCGCTGTGGTGAAAGATCCGAGATGGGGAAGATGCTATGAGAGTTATGGTGAAG 538
Query 544 TTGCTCAAATTGTTTCTGAGATGACTTCACTTGTCTCGGGTCTACAAGGGGAGCCATCCA 603
|||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 539 TTGCTCCAATTGTTTCTGAGATGACTTCACTTGTCTCAGGTCTACAAGGCGAGCCATCCA 598
Query 604 AAGACCACACAAATGGTTACCCTTTTCTTGCAGGAAGAAAAAACGTGGTTGCGTGTGCCA 663
|||| ||||| | ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 599 AAGAACACACTAGCGGTTACCCTTTTCATGCAGGAAGAAAAAACGTGGTTGCGTGTGCCA 658
Query 664 AGCACTTTGTTGGAGATGGTGGTACCAATAAGGCCATAAATGAAGGAAACACCATTTTGC 723
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 659 AGCACTTTGTTGGAGACGGTGGTACCGATAAGGCCATAAATGAAGGAAACACCATTTTGC 718
Query 724 GGTACGAAGACTTGGAGAGAAAACACATTGCTCCCTATAAGAAGTGTATTTCTCAAGGAG 783
|||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 719 GGTATGAAGACTTGGAGAGGAAACACATTGCTCCCTATAAGAAATGTATTTCTCAAGGAG 778
Query 784 TCTCTACCGTTATGGCCTCTTACTCCAGTTGGAACGGAGATAAACTTCACTCACACTACT 843
||||||||||||||| ||||||||| |||||||||||||||||||| ||||| ||||| |
Sbjct 779 TCTCTACCGTTATGGTCTCTTACTCTAGTTGGAACGGAGATAAACTCCACTCCCACTATT 838
Query 844 TCCTCTTAACGGAAATTCTCAAACAAAAACTTGGTTTCAAGGGTTATGTAGTTTCGGACT 903
|||||||||||||| |||||||||||||||| ||||||| ||| ||| |||| || ||||
Sbjct 839 TCCTCTTAACGGAAGTTCTCAAACAAAAACTCGGTTTCAGGGGATATATAGTCTCAGACT 898
Query 904 GGGAAGGTTTGGACCGGCTTAGCGACCCACCAGGTTCAAACTACCGCAACTGCGTCAAAA 963
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 GGGAAGGTTTGGACCGGCTTAGCGACCCACCAGGTTCAAACTACCGCAACTGCGTCAAAA 958
Query 964 TAGGGATTAATGCTGGAATCGATATGGTGATGGTACCTTTCAAGTATGAACAGTTTAGAA 1023
| |||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||
Sbjct 959 TGGGGATTAATGCTGGAATCGATATGGTGATGGTACCTTTCAAGTATGAAAAGTTCATAA 1018
Query 1024 ATGACTTGATAGATCTAGTGGAGTCAGGGGAAGTATCGATGGCTCGTGTTAATGACGCTG 1083
| ||| |||||||||| ||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 1019 ACGACCTGATAGATCTGGTGGAGTCAGGGGAAGTATTGATGGCTCGTGTTGATGACGCTG 1078
Query 1084 TTGAAAGAATACTTAGAGTAAAGTTTGTTGCAGGACTCTTCGAATTTCCTCTTACAGATC 1143
||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1079 TTGAAAGAATACTCAGAGTGAAGTTTGTTGCAGGACTCTTCGAATTTCCTCTCACAGATC 1138
Query 1144 GATCTTTGTTACCTACTGTTGGTTGCAAGGAACATAGAGAGTTGGCGCGTGAAGCGGTTA 1203
|||| |||||||||| |||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1139 GATCATTGTTACCTATTGTTGGTTGCAAGGAACATAGAGAATTGGCGCGTGAAGCTGTTA 1198
Query 1204 GAAAGTCGTTAGTTCTGCTAAAGAACGGCAGATATGGAGAATTTCTGCCATTAAATTGCA 1263
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1199 GAAAGTCGCTAGTTCTGCTAAAGAACGGCAAATATGGAGAATTTCTGCCATTAAATTGCA 1258
Query 1264 ATGCCGAGAGAATTCTAGTGGTTGGAACGCATGCAGATGATCTTGGATATCAATGCGGTG 1323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 ATGCCGAGAGAATTCTAGTGGTTGGAACGCATGCAGATGATCTTGGATATCAATGCGGTG 1318
Query 1324 GATGGACAAAGACAATGTATGGTCAAAGCGGAAGGATCACAGATGGCACAACGCTTTTAG 1383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 GATGGACAAAGACAATGTATGGTCAAAGCGGAAGGATCACAGATGGCACAACGCTTTTAG 1378
Query 1384 ATGCCATAAAAGCGGCAGTTGGAGACGAAACCGAAGTGATCTATGAGAAAAGTCCATCAG 1443
|||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 1379 ATGCAATAAAAGCGGCAGTTGGAGACAAAACCGAAGTGATCTATGAGAAAAATCCATCAG 1438
Query 1444 AGGAAACCTTAGCCTCAGGATATAGATTTTCTTATGCAATTGTTGCGGTGGGAGAATCGC 1503
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1439 AGGAAACCTTAGCCTCAGGATATAGATTTTCTTATGCAATTGTTGCGGTGGGGGAATCAC 1498
Query 1504 CCTATGCAGAGACTATGGGGGATAATTCAGAACTCGTAATACCTTTCAATGGTAGCGAGA 1563
|||||| |||||||||||||||||| ||||||||| ||||||||| || ||||||||||
Sbjct 1499 CCTATGTAGAGACTATGGGGGATAACTCAGAACTCACAATACCTTTTAACGGTAGCGAGA 1558
Query 1564 TTATAACCACGGTTGCAGAGAAAATACCGACTCTAGTGATCTTGTTCTCAGGACGGCCTA 1623
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1559 TTATAACCGCGGTTGCAGAGAAAATCCCGACTCTAGTGATCTTGTTCTCAGGACGGCCTA 1618
Query 1624 TGTTTCTTGAGCCGCAAGTTCTTGAAAAGGCAGAGGCGCTGGTCGCTGCTTGGCTGCCTG 1683
|| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1619 TGGTTCTTGAGCCGCAAGTTCTTGAAAAGGCAGAGGCTCTGGTCGCTGCTTGGCTGCCTG 1678
Query 1684 GTACAGAAGGGCAAGGGATTGCTGATGTAATATTCGGAGATTATGACTTCCGAGGGAAGT 1743
|||| ||||| |||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1679 GTACTGAAGGACAAGGGATTGCTGATGTAATTTTCGGAGATTATGAGTTCCGAGGGAAGT 1738
Query 1744 TACCAGCAA-CATGGTTCAAACGTGTAGACCAGTTACCTCTTGACATCGAATCAAATGGG 1802
||||||| | | ||||||||||||||||||||||| || |||||||| ||||||||||||
Sbjct 1739 TACCAGCGAGC-TGGTTCAAACGTGTAGACCAGTTGCCGCTTGACATTGAATCAAATGGG 1797
Query 1803 TATTTGCCATTGTTTCCTCTTGGTTTTGGTCTCAATGGTGATTCCGTGGAGAACTCTGAC 1862
||| | |||||||||||||||||||||||||| ||| ||||||||| ||||||||| ||
Sbjct 1798 TATCTCCCATTGTTTCCTCTTGGTTTTGGTCTGAATCGTGATTCCGCGGAGAACTC-GAA 1856
Query 1863 AC-GGTTTAAATTTGTTGTTGAATATCTTTAACAAAATTTCAAGGGACT 1910
| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1857 AATGGTTTAAATTTGTAGTTGAATATCTTTAACAAAATTTCAAGGGACT 1905
> Ahg485079 jgi|Araly1|485079|fgenesh2_kg.5__1071__AT3G47000.1
Length=2011
Score = 1594 bits (863), Expect = 0.0
Identities = 1537/1857 (83%), Gaps = 68/1857 (4%)
Strand=Plus/Plus
Query 21 aagag-gaagaaAATGGTTGACAATGAGAAGTCAT-AT--GTTTACAAGAACCGGGAAGC 76
||||| ||||||||||| | ||| ||| |||||| || ||||||||||||| || ||
Sbjct 4 AAGAGTAAAGAAAATGGTGGTCAAGGAGGAGTCATCATGCGTTTACAAGAACCAAGACGC 63
Query 77 GCCAGTGGAGGCGCGTGTAAAGGACCTTCTCTCTCGGATGACTCTGGCTGAAAAAATCGG 136
||||||||||| |||||||||||||||||||||||| |||||| || | || || |||||
Sbjct 64 GCCAGTGGAGGTGCGTGTAAAGGACCTTCTCTCTCGCATGACTTTGCCGGAGAAGATCGG 123
Query 137 CCAGATGACTTTGATCGAACGTAGCGTCGCTTCTGAGGCCGTGATAAGAGATTTCTCCAT 196
||||||||| |||||||| || ||||||||| | |||| | | |||||||| |||
Sbjct 124 TCAGATGACTCAAATCGAACGCAGAGTCGCTTCTCACGCCGCCTTTACAGATTTCTTCAT 183
Query 197 CGGTAGTGTATTGAACCG-CGCA-GGAGGTTG-GCCATTTGAGGATGCAAAGTCGTCGAA 253
||| |||||||| || || || | ||| | || ||| ||||||||||| ||||||||| |
Sbjct 184 CGGAAGTGTATT-AAACGCCGGAGGGA-G-TGTGCCGTTTGAGGATGCTAAGTCGTCGGA 240
Query 254 TTGGGCGGATATGATCGACGGCTTCCAGCGATCAGCGTTAGAGTCGCGTTTGGGAATTCC 313
|||||| |||||||||||| | || ||||| |||||||||| ||||||||||||||||||
Sbjct 241 TTGGGCTGATATGATCGACAGTTTTCAGCGTTCAGCGTTAGCGTCGCGTTTGGGAATTCC 300
Query 314 GATAATTTACGGCATTGACGCTGTTCATGGCAACAATGACGTCTACGGCGCCACCATCTT 373
|| || ||||| | ||||||||| || || ||||| | ||||||||||||||| ||||
Sbjct 301 AATCATCTACGGTACTGACGCTGTCCACGGGAACAACAATGTCTACGGCGCCACCGTCTT 360
Query 374 TCCCCACAATATTGGTCTCGGCGCCACTAGAGACGCGGATTTGGTCAA-AAGAATTGGAG 432
|||||||| ||||| ||||| ||||| |||||||| |||||||| || |||||||||||
Sbjct 361 CCCCCACAACATTGGCCTCGGAGCCACCAGAGACGCAGATTTGGT-AAGAAGAATTGGAG 419
Query 433 CTGCAACAGCACTTGAAGTAAGGGCGTGCGGTGCTCACTGGGCGTTTGCTCCTTGCGTCG 492
||||||| ||||||||| |||| ||| |||| ||||| |||||||||||||||||||| |
Sbjct 420 CTGCAACTGCACTTGAAATAAGAGCGAGCGGGGCTCATTGGGCGTTTGCTCCTTGCGTGG 479
Query 493 CAGTGGTGAAAGATCCGAGATGGGGAAGATGCTATGAGAGCTATGGTGAAGTTGCTCAAA 552
| || ||| |||||||||||||||| ||||||||||||| ||||| |||| | || |
Sbjct 480 CCGTTTTGAGAGATCCGAGATGGGGACGATGCTATGAGAGTTATGGAGAAGATCCTGGAC 539
Query 553 TTGTTTCTGAGATGACTTCACTTGTCTCGGGTCTACAAGGGGAGCCATCCA-AAGACCAC 611
|||| | |||||||||||| ||||||||||| |||||||| | |||| ||| |||| |||
Sbjct 540 TTGTCTGTGAGATGACTTCGCTTGTCTCGGGACTACAAGGCGTGCCA-CCAGAAGAACAC 598
Query 612 ACAAATGGTTACCCTTTTCTTGCAGGAAGAAAAAACGTGGTTGCGTGTGCCAAGCACTTT 671
|||||||||| |||||| |||| |||||||| || || || ||||||| ||| ||||||
Sbjct 599 CCAAATGGTTATCCTTTTGTTGCGGGAAGAAACAATGTCGTCGCGTGTGTCAAACACTTT 658
Query 672 GTTGGAGATGGTGGTACCAATAAGGCCATAAATGAAGGAAACACCATTTTGCG--GTACG 729
|||||||||||||||||| | |||| | |||| ||||| ||||||| ||||| || |
Sbjct 659 GTTGGAGATGGTGGTACCGACAAGGGCGTAAACGAAGGGAACACCA--TTGCGTCATATG 716
Query 730 AAGACTTGGAGAGAA-A-ACACATTGCTCCCTATAAGAAGTGTATTTCTCAAGGAGTCTC 787
||||||| |||||| | ||||||| |||| ||| ||| ||| || |||| ||||||||
Sbjct 717 AAGACTT--AGAGAAGATACACATTCCTCCATATCTGAACTGTCTTGCTCAGGGAGTCTC 774
Query 788 TACCGTTATGGCCTCTTACTCCAGTTGGAACGGAGA-TAAACTTCACTCACACTACTTCC 846
|| |||||||| ||||||||||||||||| ||| | || ||||||| | ||| || |
Sbjct 775 CACGGTTATGGCATCTTACTCCAGTTGGAATGGA-ACTAGACTTCACGCTGACTGTTTTC 833
Query 847 TCTTAACGGAAATTCTCAAA-CAAAAACTTGGTTTCAAGGG-TTATGTAGTTTCGGACTG 904
|||| || |||||||| ||| ||||||| ||||||||||| || | |||| || |||||
Sbjct 834 TCTTGACAGAAATTCT-AAAGGAAAAACTCGGTTTCAAGGGATT-TCTAGTCTCAGACTG 891
Query 905 GGAAGGTTTGGACCGGCTTAGCGACCCACCA-GGTTCAAACTACCGCAACTGCGTCAAAA 963
||||||||||||||||||||| || || || || ||||||||||| ||||| | ||||
Sbjct 892 GGAAGGTTTGGACCGGCTTAGTGAGCC-TCAGGGATCAAACTACCGTTACTGCATTAAAA 950
Query 964 -TAG-GGATTAATGCTGGAATCGATATGGTGATGGTACCTTTCAAGTATGAACAGTTTAG 1021
| | || |||||||||| || || ||||| |||||||| |||||||| |||||||| |
Sbjct 951 CT-GCGG-TTAATGCTGGCATTGACATGGTTATGGTACCATTCAAGTACGAACAGTTCAT 1008
Query 1022 AAATGACTTGATAGATCTAGTGGAGTCAGGGGAAGTATCGATGGCTCGTGTTAATGACGC 1081
| | ||| ||| |||||| || |||||||||||| |||| |||| ||| || ||||| ||
Sbjct 1009 ACAGGACATGACAGATCTGGTAGAGTCAGGGGAAATATCCATGGATCGGGTCAATGATGC 1068
Query 1082 TGTTGAAAGAATACTTAGAGT-AAAGTTTGTTGCAGGACTCTTCGAATTTCCTCTTACAG 1140
||||||||||||| | ||||| ||| ||||| || || |||||||||| |||||| ||||
Sbjct 1069 TGTTGAAAGAATAGTCAGAGTGAAA-TTTGTCGCTGGTCTCTTCGAATATCCTCTCACAG 1127
Query 1141 ATCGATCTTTGTTACCTACTGTTGGTTGCAAGGAACATAGAGAGTTGGCGC-GTGAAGCG 1199
||||||| |||||||||| |||||||||||||||||||||||| ||||||| | |||||
Sbjct 1128 ATCGATCATTGTTACCTATTGTTGGTTGCAAGGAACATAGAGAATTGGCGCAG-GAAGCA 1186
Query 1200 GTTAGAAAGTCGTTAGTTCTGCTAAAGAACGGCAGATATG--GAGAA----TTTCTGCCA 1253
||||||||||||||||||||||||||||| |||| | ||| || || |||||||||
Sbjct 1187 GTTAGAAAGTCGTTAGTTCTGCTAAAGAATGGCAAAAATGCTGATAAACCATTTCTGCCA 1246
Query 1254 TTAAATTGCAATGCCGAGAGAATTCTAGTGGTTGGAACGCATGCAGATGATCTTGGATAT 1313
|| || || | ||| |||| |||||||| |||||| || ||||||||||||||||||
Sbjct 1247 CTAGATCGCCACGCCAAGAGGATTCTAGTCACTGGAACTCACGCAGATGATCTTGGATAT 1306
Query 1314 CAATGCGGTGGATGGACAAAGACAATG-TAT-GGTCAAAGCGGAAGGATCACAGAT-GGC 1370
|| ||||| ||||||||||||||| || | | |||| |||||| ||||||||| || |||
Sbjct 1307 CAGTGCGGAGGATGGACAAAGACA-TGGT-TCGGTCTAAGCGGCAGGATCACA-ATCGGC 1363
Query 1371 ACAACGCTTTTAGATGCCATAAAAGCGGCAGTTGGAGACGAAACCGAAGTGATCTATGAG 1430
|| |||||||| || ||||| |||| ||||||||||||||||| ||||| |||||||||
Sbjct 1364 ACGACGCTTTTGGACGCCATTAAAGAAGCAGTTGGAGACGAAACTGAAGTAATCTATGAG 1423
Query 1431 AAAAGTCCATCAGAGGAAACCTTAGCCTCAGGAT-ATAG-ATTTTCTTATGCAATTGTTG 1488
|||| ||||||| ||||||||||||||||| | | | || ||| ||||| || |||||||
Sbjct 1424 AAAACTCCATCAAAGGAAACCTTAGCCTCAAG-TGA-AGGATTCTCTTACGCCATTGTTG 1481
Query 1489 CGGT-GGGAGAATCGCCCTATGCAGAGACTATGGGGGATAATTCAGAACTCGTAATACC- 1546
| || ||| ||| |||||||||||||||| ||||||||||| || |||||| |||| |
Sbjct 1482 CAGTCGGG-GAACCGCCCTATGCAGAGACGATGGGGGATAACTCGGAACTCAAAATATCA 1540
Query 1547 TTTCAATGGTAGCGAGATTATAACCACGGTTGCAGAGAAAATACCGACTCTAGTGATCTT 1606
||| ||||||||||| ||| |||| |||| ||||||| ||| |||||||| ||||||||
Sbjct 1541 TTT-AATGGTAGCGACATTGTAACTGCGGTAGCAGAGATAATCCCGACTCTGGTGATCTT 1599
Query 1607 GTTCTCAGGACGGCCTATGTTTCTTGAGCCGCAAG-TTCTTGAAAAGGCAGAGGCGCTGG 1665
| |||||||||| ||| || |||| |||||| | | ||||||||||| ||||||| ||||
Sbjct 1600 GATCTCAGGACGACCTGTGGTTCTGGAGCCG-ACGGTTCTTGAAAAGACAGAGGCTCTGG 1658
Query 1666 TCGCTGCTTGGCTGCCTGGTACAGAAGGGCAAGGGATTGCTGATGTAATATTCGGAGATT 1725
||||||||||||||||||| ||||||||||||||||| ||||| || || || |||||||
Sbjct 1659 TCGCTGCTTGGCTGCCTGGAACAGAAGGGCAAGGGATGGCTGACGTTATTTTTGGAGATT 1718
Query 1726 ATGACTTCCGAGGG-AAGTTACCAGCAACATGGTTCAAACGTGTAGACCAGTTACCTCTT 1784
|||||||| |||| |||||||||| | |||||||||||||| || || || || ||
Sbjct 1719 ATGACTTCA-AGGGGAAGTTACCAGTGAGTTGGTTCAAACGTGTTGAGCATTTGCCACTA 1777
Query 1785 GA--CATC-GAATCAAATGGGTATTTGCCATTGTTTCCTCTTGGTTTTGGTCTCAAT 1838
|| | || || ||| | | ||| |||||||| ||| ||||||| |||||||||
Sbjct 1778 GATGC-TCAGAC-CAATTCG-TATGACCCATTGTTCCCTTTTGGTTTCGGTCTCAAT 1831
> Ahg323329 jgi|Araly1|323329|fgenesh1_pm.C_scaffold_5000873
Length=1821
Score = 1445 bits (782), Expect = 0.0
Identities = 1479/1811 (82%), Gaps = 65/1811 (4%)
Strand=Plus/Plus
Query 57 GTTTACAAGAACCGG-GAAGCGCCAGTGGAGGCGCGTGTAAAGGACCTTCTCTCTCGGAT 115
||||||||||| ||| || |||||||||||||||||||||||||||||||||||||| ||
Sbjct 28 GTTTACAAGAA-CGGAGACGCGCCAGTGGAGGCGCGTGTAAAGGACCTTCTCTCTCGCAT 86
Query 116 GACTCTGGCTGAAAAAATCGGCCAGATGACTTTGATCGAACG-TAGCGTCGCTTCTGAGG 174
|||| || | || || || || ||||||||| ||| ||||| | ||||||||||
Sbjct 87 GACTTTGCCGGAGAAGATTGGTCAGATGACTCAGATAGAACGCTC-CGTCGCTTCTCCT- 144
Query 175 CC-GTGATAAGAGATT-TCTCCATCGGTAGTGTATTGAACCGCGCAGGAGGTTGGCCATT 232
| || || | | ||| | || ||||| |||||| || | |||| ||| ||||||| ||
Sbjct 145 CAAGTCATTACACATTCTTTC-ATCGGCAGTGTACAGAGCGGCGCCGGAAGTTGGCCGTT 203
Query 233 TGAGGATGC-AAAGTCGTCGAATTGGGCGGATATGATCGACGGCTTCCAGCGATCAGCGT 291
||| | || ||| || ||| |||||||||||||||||||| | || ||||| |||||||
Sbjct 204 CGAGAACGCCAAA-TCATCGGATTGGGCGGATATGATCGACAGTTTTCAGCGTTCAGCGT 262
Query 292 TAGAGTCGCGTTTGGGAATTCCGATAATTTACGGCATTGACGCTGTTCATGGCAACAATG 351
||| |||||||||||||||||||||||| ||||||| |||||| ||||||||||||||
Sbjct 263 TAGCGTCGCGTTTGGGAATTCCGATAATATACGGCACTGACGCCGTTCATGGCAACAACA 322
Query 352 ACGTCTACGGCGCCACCATCTTTCCCCACAATATTGGTCTCGGCGCCACTAGAGACGCGG 411
|||||||||| ||||| |||| |||||||| ||||||||||| || || |||||||| |
Sbjct 323 ACGTCTACGGTGCCACTGTCTTCCCCCACAACATTGGTCTCGGAGCTACCAGAGACGCCG 382
Query 412 ATTTGGTCAAAAGAATTGGAGCTGCAACAGCACTTGAAGTAAGGGCGT-GCGGTGCTCAC 470
|||| || | ||||||||| |||||||||||||||||||||||||| | | |||| ||||
Sbjct 383 ATTTAGTTAGAAGAATTGGTGCTGCAACAGCACTTGAAGTAAGGGC-TAGTGGTGTTCAC 441
Query 471 TGGGCGTTTGCTCCTTGCGTCGCAGTGGTGAAAGATCCGAGATGGGGAAGATGCTATGAG 530
||| | ||||||||||| || || || || |||||| || |||||| |||||||||||
Sbjct 442 TGGACATTTGCTCCTTGTGTGGCTGTTTTGGGAGATCCAAGGTGGGGACGATGCTATGAG 501
Query 531 AGCTATGGTGAAGTTGCTCAAATTGTTTCTGAGATGACTTCACTTGTCTCGGGTCTACAA 590
|| |||||||||| |||| ||||||||| |||||||| ||| ||| ||||||| ||||||
Sbjct 502 AGTTATGGTGAAGCTGCTAAAATTGTTTGTGAGATGAGTTCGCTTATCTCGGGCCTACAA 561
Query 591 GGGGAGCCATCCAAAGACCACACAAATGGTTACCCTTTTCTTGCAGGAAGAAAAAACGTG 650
|| |||||| || |||| ||| | || |||||||||||||||||||||||||| ||||||
Sbjct 562 GGCGAGCCACCCGAAGAACACCCTAACGGTTACCCTTTTCTTGCAGGAAGAAACAACGTG 621
Query 651 GTTGCGTGTGCCAAGCACTTTGTTGGAGATGGTGGTACCAATAAGGCCATAAATGAAGGA 710
|| |||||||| || |||||||||||||||||||||||| |||||| | ||| || ||
Sbjct 622 GTCGCGTGTGCTAAACACTTTGTTGGAGATGGTGGTACCGATAAGGGCTTAAGCGAGGGG 681
Query 711 AACACCATTT--TGCGGTACGAAGACTTGGAGAGAAAA-CACATTGCTCCCTATAAGAAG 767
|||||||| | | || ||||||||||||| ||| || ||||||||||| ||
Sbjct 682 AACACCATAGCAT-CA-TATGAAGACTTGGAGA-AAATTCATGTTGCTCCCTATCTTAAT 738
Query 768 TGTATTTCTCAAGGAGTCTCTACCGTTATGGCCTCTTACTCCAGTTGGAACGGA-GATAA 826
|||||| |||| ||||| | ||||||||||||||||| ||||||||||||| | | ||
Sbjct 739 TGTATTGCTCAGGGAGTGTGTACCGTTATGGCCTCTTTTTCCAGTTGGAACGAAAG-TAG 797
Query 827 ACTTCACTCAC-ACTACTTCCTCTTAACGGAAATTCTCAAACAAAAACTTGGTTTCAAGG 885
||| ||||| | |||| |||||||| |||||| ||||||| || ||||| ||||| ||||
Sbjct 798 ACTCCACTC-CGACTATTTCCTCTTGACGGAAGTTCTCAAGCAGAAACTCGGTTTTAAGG 856
Query 886 G-TTATGTAGTTTCGGACTGGGAAGGTTTGGAC-CGGCTTAGCGACCCACCAGGTTCAAA 943
| || | ||||||| |||||||| |||||||| || ||||||| ||| |||||||||
Sbjct 857 GATT-TCTAGTTTCAGACTGGGATGGTTTGGAGACGA-TTAGCGAGCCAGAAGGTTCAAA 914
Query 944 CTACCGCAACTGCGTCAAAATAGGGATTAATGCTGGAATCGATATGGTGATGGTACCTTT 1003
|||||| |||||| ||||| | |||||||||||||| ||||| |||||||||||||||||
Sbjct 915 CTACCGTAACTGCATCAAACTCGGGATTAATGCTGGGATCGACATGGTGATGGTACCTTT 974
Query 1004 CAAGTATGAACAGTTTAGAAATGACTTGATAGATCTAGTGGAGTCAGGGGAAGTATCGAT 1063
|||||| |||||||| | | | ||| ||| |||||| ||||||||||| ||| || ||||
Sbjct 975 CAAGTACGAACAGTTCATACAGGACATGACAGATCTTGTGGAGTCAGGAGAAATACCGAT 1034
Query 1064 GGCTCGTGTTAATGACGCTGTTGAAAGAATACTTAGAGTAAAGTTTGTTGCAGGACTCTT 1123
|||||| || ||||| |||||||| |||||||||||||| ||||||||||| || |||||
Sbjct 1035 GGCTCGGGTCAATGATGCTGTTGAGAGAATACTTAGAGTGAAGTTTGTTGCGGGTCTCTT 1094
Query 1124 CGAATTTCCTCT-TACAGATCGATCTTTGTTACCTACTGTTGGTTGCAAGGAACATAGAG 1182
||| |||| | | | || ||||||||||| |||||||| |||||| | |||
Sbjct 1095 TGAACATCCTTTCT-CGGACCGATCTTTGTTGGGAACTGTTGGCTGCAAG-A-----GAG 1147
Query 1183 AGTTGGCGCGTGAAGCGGTTAGAAAGTCGTTAGTTCTGCTAAAGAACGGCAGATATGG-A 1241
| | | ||||||||||||||||||||||||||| |||| ||||| || | | ||| |
Sbjct 1148 --TAG-CACGTGAAGCGGTTAGAAAGTCGTTAGTTTTGCTTAAGAATGGTAAAAATGCTA 1204
Query 1242 G-A-A---TTTCTGCCATTAAATTGCAATGCCGAGAGAATTCTAGTGGTTGGAACGCATG 1296
| | ||||||||| || | | ||||| |||| |||||||| ||||||| |||||
Sbjct 1205 ATACACCATTTCTGCCACTAGACCGTAATGCAAAGAGGATTCTAGTTGTTGGAATGCATG 1264
Query 1297 CAGATGATCTTGGATATCAATGCGGTGGATGGACAAAGACAATGTATGGTCAAAGCGGAA 1356
|| | ||||||||| |||| || || |||||||||||||||| | |||||||||||| |
Sbjct 1265 CAAACGATCTTGGAAATCAGTGTGGAGGATGGACAAAGACAAAATCTGGTCAAAGCGGCA 1324
Query 1357 GGATCACAGAT-GGCACAACGCTTTTAGATGCCATAAAAGCGGCAGTTGGAGACGAAACC 1415
| |||||| || ||||| |||||||| |||||||||||||| |||||||||||| |||||
Sbjct 1325 GAATCACA-ATTGGCACGACGCTTTTGGATGCCATAAAAGCAGCAGTTGGAGACAAAACC 1383
Query 1416 GAAGTGATCTATGAGAAAAGTCCATCAGAGGAAACCTTAGCCTC-AG-GATATAGATTTT 1473
||||||||||| ||||||| |||| || | |||||||||||||| || || | | || |
Sbjct 1384 GAAGTGATCTACGAGAAAACTCCAACAAAAGAAACCTTAGCCTCGAGTGA-AG-GCTTCT 1441
Query 1474 CTTATGCAATTGTTGCGGTGGGAGAATCGCCCTATGCAGAGACT-ATGGGGGATAATTCA 1532
| || || || ||||| ||||| || | ||||| ||||||| | | ||| ||||| ||
Sbjct 1442 CCTACGCTATCGTTGCAGTGGGGGAGCCTCCCTACGCAGAGA-TGAAGGGCGATAACTCG 1500
Query 1533 GAACTCGTAATACCTTTCAATG-GTAGCGAGATTATAACCACGGTTGCAGAGAAAATACC 1591
|||||| |||||||||||| | ||| | | ||||||||| |||||||||||||||| ||
Sbjct 1501 GAACTCACAATACCTTTCAA-GAGTAACAACATTATAACCGCGGTTGCAGAGAAAATCCC 1559
Query 1592 GACTCTAGTGATCTTGTTCTCAGGACGGCCTATGTTTCTTG-AGCCGCAA-G-TTCTTGA 1648
||||||||||||||| ||||||||||| |||||| || ||| |||| || | |||||||
Sbjct 1560 GACTCTAGTGATCTTATTCTCAGGACGTCCTATGGTT-TTGGAGCC--AACGGTTCTTGA 1616
Query 1649 AAAGGCAGAGGCGCTGGTCGCTGCTTGGCTGCCTGGTACAGAAGGGCAAGGGATTGCTGA 1708
|||| | ||||| |||||||||||||| | ||||| || ||||||||||||||| ||||
Sbjct 1617 AAAGACCGAGGCTTTGGTCGCTGCTTGGTTCCCTGGAACCGAAGGGCAAGGGATTACTGA 1676
Query 1709 TGTAATATTCGGAGATTATGACTTCCGAGGGAAGTTACCAGCAA-CATGGTTCAAACGTG 1767
||| || || ||| ||||||||||| |||||||||||||| | | ||||||||||| |
Sbjct 1677 TGTCATTTTTGGAAATTATGACTTCAAAGGGAAGTTACCAGTGAGC-TGGTTCAAACGCG 1735
Query 1768 TAGACCAGTTACCTCTTGACA-TCGAAT-CAAATGGGTATTTGCCATTGTTTCCTCTTGG 1825
|||||||||| || || || | || | | || |||| |||||||||||| ||||
Sbjct 1736 TAGACCAGTTGCCGCTAAACGCT-GA-TGCCGATTCGTATGACCCATTGTTTCCTATTGG 1793
Query 1826 TTTTGGTCTCA 1836
||| |||||||
Sbjct 1794 TTTCGGTCTCA 1804
> Ahg485080 jgi|Araly1|485080|fgenesh2_kg.5__1072__AT3G47040.1
Length=1791
Score = 763 bits (413), Expect = 0.0
Identities = 799/981 (81%), Gaps = 44/981 (4%)
Strand=Plus/Plus
Query 882 AAGGG-TTATGT-AGTTTCGGACTGGGAAGGTTTGGACCGGCTTAGCGACCCA-CCAGGT 938
||||| || ||| | |||| |||||||||| |||||| |||||||| || ||| | |||
Sbjct 781 AAGGGATT-TGTCA-TTTCTGACTGGGAAGCTTTGGAACGGCTTAGTGAGCCATTC-GGT 837
Query 939 TCAAACTACCGCAACTGCGTCAAAATAGGGA-TTAATGCTGGAATCGATATGGTGATGGT 997
|| ||||||||||||||||| |||| | ||||||||||| |||| |||||||||||
Sbjct 838 TCTAACTACCGCAACTGCGTGAAAA-CCTCAGTTAATGCTGGAGTCGACATGGTGATGGT 896
Query 998 ACCTTTCAAGTATGAACAGTTTAGAAATGACTTGATAGATCTAGTGGAGTCAGGGGAAGT 1057
|||||||||||||||||||||| ||| ||| | | |||||| |||||||||||||||||
Sbjct 897 GCCTTTCAAGTATGAACAGTTTATAAAGGACCTCACAGATCTGGTGGAGTCAGGGGAAGT 956
Query 1058 ATCGATGGCTCGTGTTA-ATGACGCTGTTGAAAGAATACTTAGAGTAAAGTTTGTTGCAG 1116
| | ||| |||| | || |||| |||||||| |||||||||||||| ||||||||||| |
Sbjct 957 AACAATGTCTCG-GATAGATGATGCTGTTGAGAGAATACTTAGAGTGAAGTTTGTTGCGG 1015
Query 1117 GACTCTTCGAATTTCCTCTTACAGATCGATCTTTGTTACCTACTGTTGGTTGCAAGGAAC 1176
| || || ||| |||||| || || |||||||| || ||||||||| ||||||||||
Sbjct 1016 GTCTTTTTGAAAATCCTCTGACGGACCGATCTTTATTGGGTACTGTTGGCTGCAAGGAAC 1075
Query 1177 ATAGAGAGTTGGCGCGTGAAGCGGTTAGAAAGTCGTTAGTTCTGCTAAAGAA-CG-GCAG 1234
||||||| | || |||||| ||||||||||||||||||| || || ||||| || |
Sbjct 1076 ATAGAGAACTAGCTCGTGAATCGGTTAGAAAGTCGTTAGTGCTCCTGAAGAACCGAAAAA 1135
Query 1235 A-TATG-G-AG-AATTTCTGCCATTAAATTGCAATGCCGAGAGAATTCTAGTGGTTGGAA 1290
| | || | || |||||||||| || || | || ||| ||||||||||||| |||||
Sbjct 1136 ATTCTGAGAAGCCATTTCTGCCACTAGATCGTAACGCCAAGAGAATTCTAGTCACTGGAA 1195
Query 1291 CGCATGCAGATGATCTTGGATATCAATGCGGTGGATGGACAAAGACAAT-GTAT-GGTCA 1348
|||| | || |||||||||||||| ||||| |||||||||||| | || || | ||||
Sbjct 1196 CGCACACGGACGATCTTGGATATCAGTGCGGGGGATGGACAAAGGC-ATGGT-TCGGTCT 1253
Query 1349 AAGCGGAAGGATCACAGAT-GGCACAACGCTTTTAGATGCCATAAAAGCGGCAGTTGGAG 1407
|||||| ||||||||| || |||||||||||||| || ||||| |||| ||||||||||
Sbjct 1254 AAGCGGCAGGATCACA-ATCGGCACAACGCTTTTGGACGCCATTAAAGAAGCAGTTGGAG 1312
Query 1408 ACGAA-ACCGAAGTGATCTATGAGAAAAGTCCATCAGAGGAAACCTTAGCCTCAGGAT-- 1464
|| || || ||||||||||| ||||| | ||| || || ||||| |||||||| || |
Sbjct 1313 AC-AAGACTGAAGTGATCTACGAGAAGACTCCTTCCGAAGAAACTTTAGCCTC-GG-TGC 1369
Query 1465 ATA-GATTTTCTTATGCAATTGTTGCGGTGGGAGAATCGCCCTATGCAGAGACTA-TGGG 1522
| | | || || || || |||||||| ||||| ||| | ||||| |||||||| | ||||
Sbjct 1370 A-AGGCTTCTCCTACGCCATTGTTGCAGTGGGGGAAACTCCCTACGCAGAGAC-ATTGGG 1427
Query 1523 GGATAATTCAGAACTCGTAATACCTTTCAATGGTAGCGAGATTATAACCACGGTTGCAGA 1582
||||| || |||||| |||||| || || |||| ||| ||| ||||| ||||||||||
Sbjct 1428 AGATAACTCGGAACTCACAATACCCTTAAACGGTAACGACATTGTAACCGCGGTTGCAGA 1487
Query 1583 GAAAATACCGACTCTAG-TGATCTTGTTCTCAGGACGGCCTATGTTTCTTGAGCCGCAAG 1641
|||||| |||||||||| || |||||||||| |||||||||||| |||||||||||| |
Sbjct 1488 GAAAATTCCGACTCTAGTTG-TCTTGTTCTCTGGACGGCCTATGGTTCTTGAGCCGCCGG 1546
Query 1642 TTCTTGAAAAGGCAGAGGCGCTGGTCGCTGCTTGGCTGCCTGGTACAGAAGGGCAAGGGA 1701
||||||||||||| ||||| ||||||||||||||||||||||| || ||||||||||| |
Sbjct 1547 TTCTTGAAAAGGCTGAGGCTCTGGTCGCTGCTTGGCTGCCTGGAACCGAAGGGCAAGGAA 1606
Query 1702 TT-GCTGATGTAATATTCGGAGATTATGACTTCCGAGGG-AAGTTACCAGCAA-CATGGT 1758
| | |||||| || || |||||||||||||| ||||| |||||||||| | | ||||
Sbjct 1607 TGAG-TGATGTCATTTTTGGAGATTATGACTTT-GAGGGGAAGTTACCAGTGAGC-TGGT 1663
Query 1759 TCAAACGTGTAGACCAGTTACCTCTTGACATC-GAATCAAATGGGTATT-TGCCATTGTT 1816
|||||| || |||||||| || || || | ||| | ||| |||| | ||||||||
Sbjct 1664 TCAAACACGTTGACCAGTTGCCG-TTAACCGCTGAAGCCAATTCGTATGAT-CCATTGTT 1721
Query 1817 TCCTCTTGGTTTTGGTCTCAA 1837
|||||||||||||||||||||
Sbjct 1722 TCCTCTTGGTTTTGGTCTCAA 1742
Score = 316 bits (171), Expect = 3e-85
Identities = 293/352 (83%), Gaps = 8/352 (2%)
Strand=Plus/Plus
Query 57 GTTTACAAGAACCGGGAAGCGCCAGTGGAGGCGCGTGTAAAGGACCTTCTCTCTCGGATG 116
||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||
Sbjct 25 GTTTACAAGAACCAAGACGCGCCAGTGGAGGCGCGTGTAAAGGACCTTCTCTCTCGCATG 84
Query 117 ACTCTGGCTGAAAAAATCGGCCAGATGACTTTGATCGAACGTAG-CGTCGCTTCTGAGGC 175
|||||| | ||||| || |||||||||||| ||||||||| | |||| || || | |
Sbjct 85 ACTCTGCCGGAAAAGATAGGCCAGATGACTCAGATCGAACGC-GTCGTCACTACTCATCC 143
Query 176 CGTGATAAGAGATTTCTCCATCGGTAGTGTATTGAACCGCGCAGGAGGTTGGCCATTTGA 235
||| || | ||||| || ||||||||||||| ||||| | | |||| ||||||| || ||
Sbjct 144 CGTCATTACAGATTACTTCATCGGTAGTGTACTGAACGGTGGAGGAAGTTGGCCGTTCGA 203
Query 236 GGATGCAAAGTCGTCGAATTGGGCGGATATGATCGACGGCTT-CCAG--CGATCAGCGTT 292
|||||| ||| ||||| ||||||| |||||||||||||| || ||| || |||||||
Sbjct 204 GGATGCTAAGACGTCGGATTGGGCTGATATGATCGACGG-TTACCAAAACG--CAGCGTT 260
Query 293 AGAGTCGCGTTTGGGAATTCCGATAATTTACGGCATTGACGCTGTTCATGGCAACAATGA 352
|| |||||| || ||||||||||| || || |||||||| ||||| ||||||||||| |
Sbjct 261 AGCGTCGCGCTTAGGAATTCCGATCATCTATGGCATTGATGCTGTCCATGGCAACAACAA 320
Query 353 CGTCTACGGCGCCACCATCTTTCCCCACAATATTGGTCTCGGCGCCACTAGA 404
|||||||| ||||| |||||||||||||| || || ||||| ||||| |||
Sbjct 321 TGTCTACGGAGCCACTATCTTTCCCCACAACATAGGCCTCGGAGCCACCAGA 372
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72447645990
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5