BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G47060.1
Length=2776
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485083 jgi|Araly1|485083|fgenesh2_kg.5__1075__AT3G47060.1 4490 0.0
Ahg496010 jgi|Araly1|496010|fgenesh2_kg.8__1826__AT5G58870.1 2338 0.0
Ahg479981 jgi|Araly1|479981|fgenesh2_kg.3__2682__AT5G58870.1 1616 0.0
> Ahg485083 jgi|Araly1|485083|fgenesh2_kg.5__1075__AT3G47060.1
Length=2775
Score = 4490 bits (2431), Expect = 0.0
Identities = 2669/2782 (96%), Gaps = 23/2782 (1%)
Strand=Plus/Plus
Query 1 AGGGTTTCG-AAATAATGACTACTACATTCGAATTTCTGCAACCAAGAATCCACGGATTT 59
||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 AGGGTTTCGAAAAT-ATGACTACTACATTCGAATTTGTGCAACCAAGAATCCACGGATTT 59
Query 60 GCAACTTGTTGTAGTAGTAATAGTCTATTGTACTCGAAAGCTTCGAGATTTTTCAACGAT 119
|||||| ||||| ||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 60 GCAACTCGTTGTTGTAGTAATAGTCTATTGTACTCGAAAGGTTCGAGCTTTTTCAACGAT 119
Query 120 CGTTGTAGGGTTTATCGCCAAAATCCGAATCGGTTTGTCTCCAATTCAATCACGCTTCCT 179
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 120 CGTTGTAGGGTTTATCGCCAAAACCCGAATCGGTTTGTCTCCAATTCAATCACGCTTCCT 179
Query 180 CTGCAGAAGAAACAAGTTACAGTGTTGAGAAATCACGAAAGGTTTAATCTTTGGGATGGG 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CTGCAGAAGAAACAAGTTACAGTGTTGAGAAATCACGAAAGGTTTAATCTTTGGGATGGG 239
Query 240 TTTTCAAGAAAGAAGAGTAGATTAGTTGTGAATTGTCAAGAAGATGATCAGAACGAGAGT 299
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 240 TTTTCAAGAAAGAAGAGTAGATTAGTTGTGAATTGTCAAGAAGATGATCAGAAAGAGAGT 299
Query 300 TCTAGTGAGGAGGAAGAAAGCAGTCAGAGTACTCCGGCGAAGTCGGAGAGGAAAAGAGAG 359
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TCGAGTGAAGAGGAAGAAAGCAGTCAGAGTACTCCGGCGAAGTCGGAGAGGAAAAGAGAG 359
Query 360 AAG-AAA--GAAGATAAGGTGTGGTGGTCAAAGGGCAAGAAATGGCAGTGGCAGCCAATA 416
||| ||| ||||||||||| |||||||||||||| ||||||||||||||||| ||||||
Sbjct 360 AAGCAAAGGGAAGATAAGGTATGGTGGTCAAAGGGGAAGAAATGGCAGTGGCAACCAATA 419
Query 417 ATCCAAGCGCAAGGGATTGGAGTTTTGTTGTTGCAATTGAGTGTTGTTATGTTTGTGATG 476
|||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 420 ATCCAAGCTCAGGGGATTGGAGTTTTGTTGTTGCAATTGGGTGTTGTTATGTTTGTGATG 479
Query 477 CGATTGCTTCGACCTGGTATACCTTTACCTGGATCGGAGCCTCGAATTCAGACGACTTTT 536
|| |||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 480 CGGTTGCTTCGACCTGGAATACCTTTACCTGGATCGGAGCCGCGAGTTCAGACGACTTTT 539
Query 537 GTGAGTGTACCGTATAGTGAGTTCTTAAGTAAAGTTAACAGTAACCAGGTGCAGAAAGTG 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GTGAGTGTACCGTATAGTGAGTTCTTAAGTAAAGTTAACAGTAACCAGGTGCAGAAAGTG 599
Query 597 GAGGTTGATGGGGTTCAAGTTTTGTTTAAGTTAAGAGATGATGGGAAGTGGCAAGAGAGT 656
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 600 GAGGTTGATGGGGTTCAAGTTTTGTTTAAGTTAAGAGATGATGGAAAGTGGCAAGAGAGT 659
Query 657 GAAACTAGTAGGTTGTCTCAGTCGTCTGAATCGTTGTTAAGAACTGTGGCTCCTACGAAA 716
|||||||||||||||||| |||||||||||||| |||||||| |||||||||| ||||||
Sbjct 660 GAAACTAGTAGGTTGTCTGAGTCGTCTGAATCGCTGTTAAGAGCTGTGGCTCCGACGAAA 719
Query 717 AGGGTTGTGTATTCCACTACTAGGCCGGGTGATATCAAAACACCGTATGAGAAGATGCTT 776
|||||||| |||||||| || |||||||||||||| ||||||||||||||||||||||||
Sbjct 720 AGGGTTGTTTATTCCACCACAAGGCCGGGTGATATTAAAACACCGTATGAGAAGATGCTT 779
Query 777 GGGAATAATGTGGAATTTGGATCGCCTGAGAAGCGTTCTGGTGGCTTCTTCAACTCTGCA 836
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 780 GGGAATAATGTGGAATTTGGATCGCCTGAGAAGCGTTCTGGTGGCTTCTTCAACTCTGGA 839
Query 837 TTGATAGCTCTTTTCTACATAGCGGTACTTGCTGGGCTTATTCGATTCCCTGTTAGCTTC 896
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 840 TTGATAGCTCTTTTCTACATAGCGGTGCTTGCTGGGCTTATTCGATTCCCTCTTAGCTTC 899
Query 897 TCCACGAGTTCAACCGGCCAGCTTAGGACCCGAAAGGCTGGTGGTCCTGATGGGGGAAAA 956
||||||||| |||||||||| |||||||| ||||| |||||||||||||||||||||||
Sbjct 900 TCCACGAGTACAACCGGCCAACTTAGGACTCGAAAATCTGGTGGTCCTGATGGGGGAAAA 959
Query 957 GTCTCTGGTGGAGGTGAAACAATCACTTTTGCGGATGTTGCAGGTGTTGATGAAGCAAAG 1016
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 960 GTCTCTGGTGGAGGTGAAACAATCACTTTTGCAGATGTTGCAGGTGTTGATGAAGCAAAG 1019
Query 1017 GAAGAGCTAGAAGAAATCGTGGAATTTCTTAGGAATCCTGAAAAGTATGTCCGTCTAGGT 1076
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1020 GAAGAGCTAGAAGAAATCGTGGAATTTCTTAGGAATCCTGACAAGTATGTCCGTCTAGGT 1079
Query 1077 GCACGTCCTCCGCGTGGTGTCCTATTGGTTGGTCTTCCCGGAACAGGGAAAACCCTTCTT 1136
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1080 GCACGTCCTCCGCGTGGTGTCCTATTGGTTGGTCTTCCTGGAACAGGGAAAACCCTTCTT 1139
Query 1137 GCAAAGGCTGTTGCTGGGGAAGCTGAAGTCCCCTTCATAAGTTGCTCTGCAAGTGAGTTT 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 GCAAAGGCTGTTGCTGGGGAAGCTGAAGTCCCCTTCATAAGTTGCTCTGCAAGTGAGTTT 1199
Query 1197 GTAGAGCTGTATGTCGGTATGGGTGCCTCACGTGTAAGGGATCTTTTTGCACGGGCCAAG 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1200 GTAGAGCTGTATGTCGGTATGGGTGCCTCACGTGTAAGGGATCTTTTTGCACGTGCCAAG 1259
Query 1257 AAGGAAGCTCCATCGATTATATTTATTGATGAGATAGATGCTGTGGCAAAAAGCCGTGAT 1316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 AAGGAAGCTCCATCGATTATATTTATTGATGAGATAGATGCTGTGGCAAAAAGCCGTGAT 1319
Query 1317 GGTAAATTCCGAATGGGGAGCAACGATGAAAGGGAGCAAACTTTAAATCAGTTGCTCACT 1376
||||||||||| || || ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1320 GGTAAATTCCGTATCGGCAGCAATGATGAAAGGGAGCAAACTTTAAATCAGTTGCTCACT 1379
Query 1377 GAGATGGATGGTTTTGACAGCAATTCTGCGGTTATCGTTCTTGGAGCTACAAATCGTGCC 1436
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1380 GAGATGGATGGTTTTGACAGCAACTCTGCGGTGATCGTTCTTGGAGCTACAAATCGTGCT 1439
Query 1437 GATGTCTTAGATCCGGCCCTGCGTCGTCCTGGGAGATTTGATCGTGTTGTTACGGTGGAA 1496
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1440 GATGTCTTAGACCCGGCCCTGCGTCGTCCTGGGAGATTCGATCGTGTTGTTACGGTGGAA 1499
Query 1497 ACGCCAGACAAAATTGGAAGAGAATCCATTTTGAGAGTACATGTGTCAAAGAAAGAGCTT 1556
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 ACGCCAGACAAAGTTGGAAGAGAATCCATTTTGAGAGTACATGTGTCAAAGAAAGAGCTT 1559
Query 1557 CCTTTGGGAGATGATGTCAACCTCGGTAGTATTGCCTCAATGACCACTGGTTTCACGGGG 1616
||||||||||||||||| ||||| ||| |||||||||||||||| |||||||| ||||||
Sbjct 1560 CCTTTGGGAGATGATGTTAACCTTGGTTGTATTGCCTCAATGACAACTGGTTTTACGGGG 1619
Query 1617 GCAGATCTTGCAAACTTGGTAAATGAGGCTGCCTTGCTAGCTGGAAGAAAGAACAAGACG 1676
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1620 GCAGACCTTGCAAACTTGGTAAACGAGGCTGCCTTGCTAGCTGGAAGAAAGAACAAGACG 1679
Query 1677 AAC-GTTGAGAAAATTGACTTCATTCAAGCTGTGGAGCGATCAATAGCGGGCATAGAGAA 1735
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1680 -ACTGTTGAAAAAATTGACTTCATTCAAGCTGTGGAGCGATCAATAGCGGGCATAGAGAA 1738
Query 1736 GAAATCTGCAAGATTAAAAGGCAATGAGAAGGCAGTGGTCGCAAGGCATGAAGCTGGGCA 1795
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1739 GAAATCTGCAAGATTAAAAGGCAACGAGAAGGCAGTGGTGGCAAGGCATGAAGCTGGGCA 1798
Query 1796 TGCAGTGGTTGGTACCGCTGTTGCAAATCTTCTTACTGGACAGCCACGTGTTGAGAAATT 1855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1799 TGCAGTGGTTGGTACCGCTGTTGCAAATCTTCTTACTGGACAGCCACGTGTTGAGAAATT 1858
Query 1856 AAGCATATTGCCAAGAACAGGAGGGGCATTGGGATTTACATACATTCCTCCTACTAGTGA 1915
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1859 AAGCATATTGCCAAGATCAGGAGGGGCATTGGGATTTACATACATTCCTCCTACCAGTGA 1918
Query 1916 AGACAGATATTTACTCTTCATTGATGAGCTGCTTGGGCGTTTAGTTACCCTTCTTGGAGG 1975
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1919 AGACAGATATTTGCTCTTCATTGATGAGCTGCTTGGGCGTTTAGTTACCCTTCTTGGAGG 1978
Query 1976 TCGTGCAGCTGAAGAAGTTGTTTACTCAGGGCGTATATCAACAGGTGCATTTGATGATAT 2035
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1979 TCGTGCAGCTGAAGAAGTTGTTTACTCAGGGCGTATATCAACAGGTGCATTTGACGATAT 2038
Query 2036 AAGGCGGGCAACTGATATGGCATACAAGGCAGTAGCTGAATACGGTCTTAACCAAAAAAT 2095
||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 2039 AAGGCGGGCTACTGATATGGCATACAAGGCAGTAGCAGAATATGGTCTTAACCAAAAAAT 2098
Query 2096 CGGACCTGTGTCTGTGGCTACACTTTCTGGTGGTGGGATTGACGATTCTGGAGGCTCGCC 2155
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 2099 CGGACCTGTGTCTGTGGCTACACTTTCTGGTGGTGGGATTGACGACTCTGGAGGCTCTCC 2158
Query 2156 ATGGGGAAGAGATCAGGGGAAACTAGTTGATCTTGTTCAAAAAGAAGTGACAATTTTGTT 2215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2159 ATGGGGAAGAGATCAGGGGAAACTAGTTGATCTTGTTCAAAAAGAAGTGACAATTTTGTT 2218
Query 2216 ACAATCTGCTCTCGATGTTGCGCTGTCTGTTGTACGCGCTAATCCAGATGTATTGGAAGG 2275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2219 ACAATCTGCTCTCGATGTTGCGCTGTCTGTTGTACGCGCTAATCCAGATGTATTGGAAGG 2278
Query 2276 GCTTGGTGCTCAACTTGAAGAGAAAGAGAAAGTAGAAGGTGAAGAACTGCAGAAGTGGTT 2335
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 2279 GCTTGGTGCTCAACTTGAAGAGAAAGAGAAAGTAGAAGGTGAAGAACTTCAGATGTGGTT 2338
Query 2336 AAGCATGGTGGTTGCACCAGAAGAACTCGCAGTCTTTGTCGAAGGAAAGCAAGAGCTTTT 2395
||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 2339 AAGTATGGTGGTTGCACCTGAAGAACTCGCAGTCTTTGTCAAAGGAAAGCAAGAGCTTTT 2398
Query 2396 GCTCCCAGCACAAGCTAGCTCCAGTTAACA-ACTACTCTGTTCTATCATCA-ATTATAGC 2453
|||||| ||||||||||||||||||||||| | |||||||||||||||| | ||||||||
Sbjct 2399 GCTCCCGGCACAAGCTAGCTCCAGTTAACAGA-TACTCTGTTCTATCAT-ATATTATAGC 2456
Query 2454 TATAAAGACAGTATCTAACACGGATCATCAGCTCTTTCCTTGCTGCCTTCTGTATCTCCA 2513
|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 2457 CATAAAGACAGTATCTAACACGGATCATCAGATCTTTCCTCGCTGCCTTCTGTATCTCCA 2516
Query 2514 GGTCAGATCTGGTTATCACCATTGCCCTTTAGCATCCATGGTTCCAGCATGCATAGAACA 2573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2517 GGTCAGATCTGGTTATCACCATTGCCCTTTAGCATCCATGGTTCCAGCATGCATAGAACA 2576
Query 2574 CTTGAATCAAA-CTTGAAGAACCATATTGGGATATGACTTTTGGTGATAACTCATAGATT 2632
||||||||||| ||||||||||||| |||| |||||| | ||||||| ||||||||||
Sbjct 2577 CTTGAATCAAAACTTGAAGAACCATTTTGGAATATGAAACT-GGTGATATCTCATAGATT 2635
Query 2633 TTGGTGGATGTGT-TT-TAAGATTTGGTATTCTTGCTAGATACAGTCTCTTTAA-----C 2685
||| ||||||||| || |||||||||||||||||||||||||||||||||| || |
Sbjct 2636 TTGCTGGATGTGTGTTGTAAGATTTGGTATTCTTGCTAGATACAGTCTCTTAAAGAGAAC 2695
Query 2686 TTGGCAAAAAAGTGTATAATTGATTCATATGTATAAAAA-GCCAGACTGATATGTGTAAA 2744
||||||||| |||||||| ||||||| ||||||||||| |||||||| |||||||||||
Sbjct 2696 TTGGCAAAA--GTGTATAAGTGATTCAGATGTATAAAAAAGCCAGACTTATATGTGTAAA 2753
Query 2745 GATCTTAAAGACCCCCACAAAA 2766
||||||||||||||| ||||||
Sbjct 2754 GATCTTAAAGACCCCTACAAAA 2775
> Ahg496010 jgi|Araly1|496010|fgenesh2_kg.8__1826__AT5G58870.1
Length=2725
Score = 2338 bits (1266), Expect = 0.0
Identities = 2043/2408 (85%), Gaps = 94/2408 (4%)
Strand=Plus/Plus
Query 61 CAACTTGTTGTAGTAGTAATAGTCTATTGTACTCGAAAGCTTCGAGATTTTT-CAACGAT 119
||||||||||||||| || |||| ||||||| | | | |||||||| ||||| | | |||
Sbjct 113 CAACTTGTTGTAGTACTAGTAGTTTATTGTATTTGCATGCTTCGAGCTTTTTCCGA-GAT 171
Query 120 C-GT-TGTAGGGTTTATCGCCAAAATCCGAATCGGTTTGTCTCCAATTCAA-TCACGCTT 176
| || | | ||||| ||| || ||||||||||| |||||||||||||||| ||| |||
Sbjct 172 CGGTCT-TTTGGTTT-TCGTCAGAATCCGAATCGATTTGTCTCCAATTCAATTCA-ACTT 228
Query 177 CCTCTGCAGAAGAAACAAGTTACAGTGTTGAGAAATCACGAAAGGTTTAATCTTTGGGAT 236
| || | || | |||||||| || || ||| || |||||||| ||||||||| |
Sbjct 229 -C-CT-C-----AATC-AGTTACAGGGTCGATAAACCATGAAAGGTTCAATCTTTGGCAA 279
Query 237 GGGTTTTCAAGAAAGAAGAG---TAG-A-T--TA-G-TTGTGAATTGTCAAGAAGATGAT 287
|||||||| || |||||||| ||| | | | | |||||||||||||||||| ||||
Sbjct 280 GGGTTTTCGAGGAAGAAGAGTACTAGTAGTAGAACGATTGTGAATTGTCAAGAAGGTGAT 339
Query 288 CAGAACGAGAGTTCTAGTG-AGGAGGAA-GAAAGCAGTCAGAGTACTCCGGC-GAAGTCG 344
||||| | || || |||| |||| ||| ||||| | | || | | || ||| |
Sbjct 340 CAGAAAGCTAGCTCAAGTGAAGGA-GAAGGAAAG-A--C-GA--A-T-AAGCAGAA--AG 388
Query 345 GAGAGGAAAAGAGAGAAGAAAGAAGATAAGG-TGTGGTGGTC-AAAGGGCAAGAAATGGC 402
||| || ||| | | | ||| | || || | |||||||| |||||| ||||||||||
Sbjct 389 GAG-GG--AAG-CA-AGGTAAG-A-AT-GGGTTATGGTGGTCTAAAGGG-AAGAAATGGC 439
Query 403 AGTGGCAGCCAATAATCCAAGCGCAAGG-GATTGGAGTTTTGTTGTTGCAATTGAGTGTT 461
||||| | || || || ||||||| ||| |||||| ||||| || | |||||| || ||
Sbjct 440 AGTGGGAACCGATTATTCAAGCGC-AGGAGATTGGTGTTTTATTACTACAATTGGGTATT 498
Query 462 GTTATGTTTGTGATGCGATTGCTTCGACCTGGTATACCTTTACCTGGATCGGAGCCTCGA 521
|||||||||||| ||||||||||||||||||| || || ||||| || |||||||||||
Sbjct 499 GTTATGTTTGTGGTGCGATTGCTTCGACCTGGAATCCCGTTACCGGGTTCGGAGCCTCGC 558
Query 522 ATTCAGACGACTTTTGTGAGTGTACCGTATAGTGAGTTCTTAAGTAAAGTTAACAGTAAC 581
| |||||||| ||| ||||||||||||||||||| ||||| ||||||||||||| | |
Sbjct 559 ACACAGACGACGTTTATGAGTGTACCGTATAGTGATTTCTTGAGTAAAGTTAACAATGAT 618
Query 582 CAGGTGCAGAAAGTGGAGGTTGATGGGGTTCAAGTTTTGTTTAAGTT-AAGAGATGATGG 640
|||| |||||||||||||| ||||| ||||| |||||||||||||| || |||||||||
Sbjct 619 GAGGTTCAGAAAGTGGAGGTGGATGGTGTTCATGTTTTGTTTAAGTTGAA-AGATGATGG 677
Query 641 GAAGTGGCAAGAGAGTGAAACTA---GTAG---G-TTGTCTCAGTCGTCTGA-ATCGT-T 691
||| | ||||||||||||||||| |||| | || ||| |||||||||| | | | |
Sbjct 678 GAATTTGCAAGAGAGTGAAACTAGTGGTAGTAAGCTT-TCTGAGTCGTCTGAGA-C-TAT 734
Query 692 G-TTAAGAACTGTGGCTCCTACGAAAAGGGTTGTGTATTCCACTACTAGGCCG-GGTGAT 749
| || |||| ||||||||| || ||||||||||| |||||||| || |||||| || |||
Sbjct 735 GCTT-AGAAGTGTGGCTCCGACTAAAAGGGTTGTATATTCCACCACAAGGCCGAGG-GAT 792
Query 750 ATCAAAACACCGTATGAGAAGATGCTTGGGAATAATGTGGAATTTGGATCGCCTGAGAAG 809
|| ||||| ||||| ||||| ||||||| ||||||||||||||| || |||||||| |||
Sbjct 793 ATTAAAACGCCGTACGAGAAAATGCTTGAGAATAATGTGGAATTCGGGTCGCCTGATAAG 852
Query 810 CGTTCTGGTGGCTTCTTCAACTCTGCATTGATAGCTCTTTTCTACATAGCGGTACTTGCT 869
|| ||||||||||| |||||||||| |||||||| ||| |||||||| || || |||||
Sbjct 853 CGCTCTGGTGGCTTTTTCAACTCTGGATTGATAGTTCTATTCTACATTGCAGTGCTTGCA 912
Query 870 GGGCTTAT---TCGATTCCCTGTTAGCTTCT-CCACGAGTTCAACCGGCCAGCTTAGGAC 925
|||||| | ||||| ||||||| ||| | ||| |||| |||| || ||||| |||||
Sbjct 913 GGGCTTCTCCACCGATTTCCTGTTAACTTTTCCCA-GAGTACAACGGGACAGCTGAGGAC 971
Query 926 CCGAAAGGCTGGTGGTCCTGATGGGGGAAAAGTCTCTGGTGGAGGTGAAACAATCACTTT 985
|| ||| |||||||||||| ||||||||| || ||||||| ||||||||||||||||||
Sbjct 972 ACGCAAGTCTGGTGGTCCTGGTGGGGGAAAGGTTTCTGGTGAAGGTGAAACAATCACTTT 1031
Query 986 TGCGGATGTTGCAGGTGTTGATGAAGCAAAGGAAGAGCTAGAAGAAATCGTGGAATTTCT 1045
||| |||||||| |||||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 1032 TGCAGATGTTGCTGGTGTTGATGAAGCAAAGGAAGAGCTGGAAGAGATTGTGGAATTTCT 1091
Query 1046 TAGGAATCCTGAAAAGTATGTCCGTCTAGGTGCACGTCCTCCGCGTGGTGTCCTATTGGT 1105
| ||||||||| | |||||||||||||||||| || || || |||||||| || ||
Sbjct 1092 CAAGAATCCTGATAGGTATGTCCGTCTAGGTGCTCGCCCCCCTCGTGGTGTTTTACCAGT 1151
Query 1106 TGGTCTTCCC-GGAACAGGGAAAACCCTTCTTGCAAAGGCTGTTGCTGGGGAAGCTGAAG 1164
||||| |||| |||||||||||||||||||||||||| ||||||||||||||| |||| |
Sbjct 1152 TGGTC-TCCCGGGAACAGGGAAAACCCTTCTTGCAAAAGCTGTTGCTGGGGAATCTGATG 1210
Query 1165 TCCCCTTCATAAGTTGCTCTGCAAGTGAGTTTGTAGAGCTGTATGTCGGTATGGGTGCCT 1224
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
Sbjct 1211 TCCCCTTCATAAGTTGCTCTGCAAGTGAGTTTGTAGAGCTGTATGTTGGCATGGGTGCTT 1270
Query 1225 CACGTGTAAGGGATCTTTTTGCACGGGCCAAGAAGGAAGCTCCATCGATTATATTTATTG 1284
|||| |||||||||||||||||||||||||||||||| ||||| || ||||||||||| |
Sbjct 1271 CACGCGTAAGGGATCTTTTTGCACGGGCCAAGAAGGAGGCTCCGTCAATTATATTTATAG 1330
Query 1285 ATGAGATAGATGCTGTGGCAAAAAGCCGTGATGGTAAATTCCGAATGGGGAGCAACGATG 1344
|||||||||||||||| || ||||||||||||||||||||| |||||| ||||| ||||
Sbjct 1331 ATGAGATAGATGCTGTCGCGAAAAGCCGTGATGGTAAATTCAGAATGGTCAGCAATGATG 1390
Query 1345 AAAGGGAGCAAACTTTAAATCAGTTGCTCACTGAGATGGATGGTTTTGACAGCAATTCTG 1404
|||| ||||||||||| ||||||||||||||||||||||||||||||||||| | || |
Sbjct 1391 AAAGAGAGCAAACTTTGAATCAGTTGCTCACTGAGATGGATGGTTTTGACAGTAGCTCAG 1450
Query 1405 CGGTTATCGTTCTTGGAGCTACAAATCGTGCCGATGTCTTAGATCCGGCCCTGCGTCGTC 1464
| ||||| |||||||||||||| ||||| || ||||||||||| || ||||||||||| |
Sbjct 1451 CAGTTATTGTTCTTGGAGCTACCAATCGAGCTGATGTCTTAGACCCCGCCCTGCGTCGGC 1510
Query 1465 CTGGGAGATTTGATCGTGTTGTTACGGTGGAAACGCCAGACAAAATTGGAAGAGAATCCA 1524
|||||||||||||||||||||||||||||||| | || |||||| |||||||||||||||
Sbjct 1511 CTGGGAGATTTGATCGTGTTGTTACGGTGGAATCACCTGACAAAGTTGGAAGAGAATCCA 1570
Query 1525 TTTTGAGAGTACATGTGTCAAAGAAAGAGCTTCCTTTGGGAGATGATGTCAACCTCGGTA 1584
| |||| ||| ||||| |||||||||||||||||||||||| ||||||||||||| | ||
Sbjct 1571 TATTGAAAGTGCATGTTTCAAAGAAAGAGCTTCCTTTGGGAAATGATGTCAACCTAGCTA 1630
Query 1585 GTATTGCCTCAATGACCACTGGTTTCACGGGGGCAGATCTTGCAAACTTGGTAAATGAGG 1644
|||||||||||||||| || ||||| || |||||||| ||||| ||| | || |||||||
Sbjct 1631 GTATTGCCTCAATGACAACCGGTTTTACTGGGGCAGACCTTGCGAACCTAGTTAATGAGG 1690
Query 1645 CTGCCTTGCTAGCTGGAAGAAAGAACAAGACGAAC-GTTGAGAAAATTGACTTCATTCAA 1703
|||| || ||||| ||||| |||| ||||| || | ||||| |||||||||||||||||
Sbjct 1691 CTGCTTTACTAGCGGGAAGGAAGAGCAAGATGA-CTGTTGAAAAAATTGACTTCATTCAG 1749
Query 1704 GCTGTGGAGCGATCAATAGCGGGCATAGAGAAGAAATCTGCAAGATTAAAAGGCAATGAG 1763
||||| |||||||| ||||||||||||||||||||| | ||||| |||||||| | ||||
Sbjct 1750 GCTGTCGAGCGATCTATAGCGGGCATAGAGAAGAAAACAGCAAGGTTAAAAGGTAGTGAG 1809
Query 1764 AAGGCAGTGGTCGCAAGGCATGAAGCTGGGCATGCAGTGGTTGGTACCGCTGTTGCAAAT 1823
|| || ||||| ||||||||||||||||||||||| || ||||||||||||||||||| |
Sbjct 1810 AAAGCTGTGGTTGCAAGGCATGAAGCTGGGCATGCTGTTGTTGGTACCGCTGTTGCAAGT 1869
Query 1824 CTTCTTACTGGACAG-CCACGTGTTGAGAAATTAAGCATATTGCCAAGAACAGGAGGGGC 1882
|||||| |||||||| || |||||||||||||||||||||||||||||| ||||||||||
Sbjct 1870 CTTCTTCCTGGACAGTCC-CGTGTTGAGAAATTAAGCATATTGCCAAGATCAGGAGGGGC 1928
Query 1883 ATTGGGATTTACATACATTCCTCCTACT-AGTGAAGACAGATATTTACTCTTCATTGATG 1941
|||||| ||||||||||||||||| || | ||||||||||||||| || ||||||||||
Sbjct 1929 ATTGGGCTTTACATACATTCCTCCAACACA-TGAAGACAGATATTTGCTTTTCATTGATG 1987
Query 1942 AGCTGCTTGGGCGTTTAGTTACCCTTCTTGGAGGTCGTGCAGCTGAAGAAGTTGTTTACT 2001
| || | ||| || || || || |||||||||||||||||||||||||| ||||||||||
Sbjct 1988 AACTACATGGCCGCTTGGTAACGCTTCTTGGAGGTCGTGCAGCTGAAGAGGTTGTTTACT 2047
Query 2002 CAGGGCGTATATCAACAGGTGCATTTGATGATATAAGGCGGGCAACTGATATGGCATACA 2061
| ||||||||||||||||||||| |||||||||| ||| | ||||| || ||||| || |
Sbjct 2048 CGGGGCGTATATCAACAGGTGCACTTGATGATATCAGGAGAGCAACCGACATGGCTTATA 2107
Query 2062 AGGCAGTAGCTGAATACGGTCTTAACCAAAAAATCGGACCTGTGTCTGTGGCTACACTTT 2121
|||||||||||||||| ||||||||||| ||||||||||| || ||||||||||| ||||
Sbjct 2108 AGGCAGTAGCTGAATATGGTCTTAACCAGAAAATCGGACCCGTCTCTGTGGCTACGCTTT 2167
Query 2122 CTGGTGGTGGGATTGACGATTCTGGAGGCTCGCCATGGGGAAGAGATCAGGGGAAACTAG 2181
||| |||||||||||| || ||||| || || ||||||||||||||||||||| | ||||
Sbjct 2168 CTGCTGGTGGGATTGATGACTCTGGGGGATCACCATGGGGAAGAGATCAGGGGCATCTAG 2227
Query 2182 TTGATCTTGTTCAAAAAGAAGTGACAATTTTGTTACAATCTGCTCTCGATGTTGCGCTGT 2241
||||||||||||||| ||| ||||||| |||||| ||||||||||| ||||||||| ||
Sbjct 2228 TTGATCTTGTTCAAAGAGAGGTGACAAATTTGTTGCAATCTGCTCTGGATGTTGCGTTGA 2287
Query 2242 CTGTTGTACGCGCTAATCCAGATGTATTGGAAGGGCTTGGTGCTCAACTTGAAGA-GAAA 2300
||||||| |||||||||||||||||||| |||||||| ||||||||||| ||||| |||
Sbjct 2288 CTGTTGTTCGCGCTAATCCAGATGTATTAGAAGGGCTCGGTGCTCAACTGGAAGATGAA- 2346
Query 2301 GAGAAAGTAGAAGGTGAAGAACTGCAGAAGTGGTTAAGCATG-GTGGTTGCAC-CAGAAG 2358
|||||||||||||||||||| ||||||| ||||||| | | || || || | |||| |
Sbjct 2347 GAGAAAGTAGAAGGTGAAGAGTTGCAGAAATGGTTAAATA-GAGTAGT-GCCCTCAGAGG 2404
Query 2359 AACTCGCAGTCTTTGTCGAA-GGAAAGCAAGA-GCTTTTGCTCCCAGCACAAGCTAGCTC 2416
|||| ||||| || || || ||||| | || ||||| ||| |||||||||||||||||
Sbjct 2405 AACTTGCAGTGTTCATC-AACGGAAAACGAGCTGCTTT-GCTTCCAGCACAAGCTAGCTC 2462
Query 2417 CAGTTAAC 2424
||||||||
Sbjct 2463 CAGTTAAC 2470
> Ahg479981 jgi|Araly1|479981|fgenesh2_kg.3__2682__AT5G58870.1
Length=2625
Score = 1616 bits (875), Expect = 0.0
Identities = 1471/1750 (84%), Gaps = 76/1750 (4%)
Strand=Plus/Plus
Query 64 CTTGTTGTAGTAGTAATAGTCTATTGTACTCGAAAGCTTCGAGATTTTT-CAACGATC-G 121
|||||||||||| || |||| ||||||| | | | ||||| || ||||| | | |||| |
Sbjct 116 CTTGTTGTAGTACTAGTAGTTTATTGTATTTGCATGCTTCTAGCTTTTTCCGA-GATCGG 174
Query 122 T-TGTAGGGTTTATCGCCAAAATCCGAATCGGTTTGTCTCCAATTCAA-TCACGCTTCCT 179
| | | ||||| ||| || ||||||||||| |||||||||||||||| ||| ||| |
Sbjct 175 TCT-TTTGGTTT-TCGTCAGAATCCGAATCGATTTGTCTCCAATTCAATTCA-ACTT-C- 229
Query 180 CTGCAGAAGAAACAAGTTACAGTGTTGAGAAATCACGAAAGGTTTAATCTTTGGGATGGG 239
|| | || | |||||||| || || ||| || |||||||| ||||||||| | |||
Sbjct 230 CT-C-----AATC-AGTTACAGGGTCGATAAACCATGAAAGGTTCAATCTTTGGCAAGGG 282
Query 240 TTTTCAAGAAAGAAGAG---TAG-A-T--TA-G-TTGTGAATTGTCAAGAAGATGATCAG 290
||||| || |||||||| ||| | | | | |||||||||||||||||| |||||||
Sbjct 283 TTTTCGAGGAAGAAGAGTACTAGTAGTAGAACGATTGTGAATTGTCAAGAAGGTGATCAG 342
Query 291 AACGAGAGTTCTAGTG-AGGAGGAA-GAAAGCAGTCAGAGTACTCCGGCGAAGTCGGAG- 347
|| | || || |||| |||| ||| ||||| | || | | | || |||| ||
Sbjct 343 AAAGCTAGCTCAAGTGAAGGA-GAAGGAAAG-A--CA-A--A-TTCGAATTCGTCGAAGC 394
Query 348 AGGAAAAGAGAG-AAG-AAAG-AAG-ATAAGG-TGTGGTGGTC-AAAGGGCAAGAAATGG 401
| |||| ||| | ||| || | ||| || || | |||||||| |||||| |||||||||
Sbjct 395 A-GAAAGGAG-GTAAGCAAGGTAAGAAT-GGGTTATGGTGGTCTAAAGGG-AAGAAATGG 450
Query 402 CAGTGGCAGCCAATAATCCAAGCGCAAGG-GATTGGAGTTTTGTTGTTGCAATTGAGTGT 460
|||||| | || || || ||||||| ||| |||||| ||||| || | |||||| || |
Sbjct 451 CAGTGGGAACCGATTATTCAAGCGC-AGGAGATTGGTGTTTTATTACTACAATTGGGTAT 509
Query 461 TGTTATGTTTGTGATGCGATTGCTTCGACCTGGTATACCTTTACCTGGATCGGAGCCTCG 520
||||||||||||| ||||||||||||||||||| || || ||||| || |||||||||||
Sbjct 510 TGTTATGTTTGTGGTGCGATTGCTTCGACCTGGAATCCCGTTACCGGGTTCGGAGCCTCG 569
Query 521 AATTCAGACGACTTTTGTGAGTGTACCGTATAGTGAGTTCTTAAGTAAAGTTAACAGTAA 580
| |||||||| ||| ||||||||||||||||||| ||||| ||||||||||||| | |
Sbjct 570 CACACAGACGACGTTTATGAGTGTACCGTATAGTGATTTCTTGAGTAAAGTTAACAATGA 629
Query 581 CCAGGTGCAGAAAGTGGAGGTTGATGGGGTTCAAGTTTTGTTTAAGTT-AAGAGATGATG 639
|||| |||||||||||||| ||||| ||||| |||||||||||||| || ||||||||
Sbjct 630 TGAGGTTCAGAAAGTGGAGGTAGATGGTGTTCATGTTTTGTTTAAGTTGAA-AGATGATG 688
Query 640 GGAAGTGGCAAGAGAGTGAAACTA---GTAG---G-TTGTCTCAGTCGTCTGA-ATCGT- 690
|||| | ||||||||||||||||| |||| | || ||| |||||||||| | | |
Sbjct 689 GGAATTTGCAAGAGAGTGAAACTAGTGGTAGTAAGCTT-TCTGAGTCGTCTGAGA-C-TA 745
Query 691 TG-TTAAGAACTGTGGCTCCTACGAAAAGGGTTGTGTATTCCACTACTAGGCCG-GGTGA 748
|| || |||| ||||||||| || ||||||||||| |||||||| || |||||| || ||
Sbjct 746 TGCTT-AGAAGTGTGGCTCCGACTAAAAGGGTTGTATATTCCACCACAAGGCCGAGG-GA 803
Query 749 TATCAAAACACCGTATGAGAAGATGCTTGGGAATAATGTGGAATTTGGATCGCCTGAGAA 808
||| ||||| ||||| ||||| ||||||| ||||||||||||||| || |||||||| ||
Sbjct 804 TATTAAAACGCCGTACGAGAAAATGCTTGAGAATAATGTGGAATTCGGGTCGCCTGATAA 863
Query 809 GCGTTCTGGTGGCTTCTTCAACTCTGCATTGATAGCTCTTTTCTACATAGCGGTACTTGC 868
||| ||||||||||| |||||||||| |||||||| ||| |||||||| || || |||||
Sbjct 864 GCGCTCTGGTGGCTTTTTCAACTCTGGATTGATAGTTCTATTCTACATTGCAGTGCTTGC 923
Query 869 TGGGCTTAT---TCGATTCCCTGTTAGCTTCT-CCACGAGTTCAACCGGCCAGCTTAGGA 924
|||||| | ||||| ||||||| ||| | ||| |||| |||| || || || ||||
Sbjct 924 AGGGCTTCTCCACCGATTTCCTGTTAACTTTTCCCA-GAGTACAACGGGACAACTGAGGA 982
Query 925 CCCGAAAGGCTGGTGGTCCTGATGGGGGAAAAGTCTCTGGTGGAGGTGAAACAATCACTT 984
| || ||| |||||||||||| |||||| ||||| ||||||| |||||||||||||||||
Sbjct 983 CACGCAAGTCTGGTGGTCCTGGTGGGGGGAAAGTTTCTGGTGAAGGTGAAACAATCACTT 1042
Query 985 TTGCGGATGTTGCAGGTGTTGATGAAGCAAAGGAAGAGCTAGAAGAAATCGTGGAATTTC 1044
|||| |||||||| |||||||||||||||||||||||||| ||||| || ||||||||||
Sbjct 1043 TTGCAGATGTTGCTGGTGTTGATGAAGCAAAGGAAGAGCTGGAAGAGATTGTGGAATTTC 1102
Query 1045 TTAGGAATCCTGAAAAGTATGTCCGTCTAGGTGCACGTCCTCCGCGTGGTGTCCTATTGG 1104
| | ||||||||| | |||||||||||||||||| ||||| || ||||||||| ||||||
Sbjct 1103 TCAAGAATCCTGATAGGTATGTCCGTCTAGGTGCTCGTCCCCCTCGTGGTGTCTTATTGG 1162
Query 1105 TTGGTCTTCCC-GGAACAGGGAAAACCCTTCTTGCAAAGGCTGTTGCTGGGGAAGCTGAA 1163
| |||| |||| |||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 1163 TCGGTC-TCCCTGGAACAGGGAAAACCCTTCTTGCAAAAGCTGTTGCTGGGGAATCTGAT 1221
Query 1164 GTCCCCTTCATAAGTTGCTCTGCAAGTGAGTTTGTAGAGCTGTATGTCGGTATGGGTGCC 1223
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1222 GTCCCCTTCATAAGTTGCTCTGCAAGTGAGTTTGTAGAGCTGTATGTTGGCATGGGTGCT 1281
Query 1224 TCACGTGTAAGGGATCTTTTTGCACGGGCCAAGAAGGAAGCTCCATCGATTATATTTATT 1283
||||| |||||||||||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 1282 TCACGCGTAAGGGATCTTTTTGCACGGGCCAAGAAGGAGGCTCCGTCAATTATATTTATA 1341
Query 1284 GATGAGATAGATGCTGTGGCAAAAAGCCGTGATGGTAAATTCCGAATGGGGAGCAACGAT 1343
||||||||||||||||| || ||||||||||||||||||||| |||||| ||||| |||
Sbjct 1342 GATGAGATAGATGCTGTCGCGAAAAGCCGTGATGGTAAATTCAGAATGGTCAGCAATGAT 1401
Query 1344 GAAAGGGAGCAAACTTTAAATCAGTTGCTCACTGAGATGGATGGTTTTGACAGCAATTCT 1403
||||| ||||||||||| ||||||||||||||||||||||||||||||||||| | ||
Sbjct 1402 GAAAGAGAGCAAACTTTGAATCAGTTGCTCACTGAGATGGATGGTTTTGACAGTAGCTCA 1461
Query 1404 GCGGTTATCGTTCTTGGAGCTACAAATCGTGCCGATGTCTTAGATCCGGCCCTGCGTCGT 1463
|| ||||| |||||||||||||| ||||| || ||||||||||| || |||||||||||
Sbjct 1462 GCAGTTATTGTTCTTGGAGCTACCAATCGAGCTGATGTCTTAGACCCCGCCCTGCGTCGG 1521
Query 1464 CCTGGGAGATTTGATCGTGTTGTTACGGTGGAAACGCCAGACAAAATTGGAAGAGAATCC 1523
||||||||||||||||||||||||||||||||| | || |||||| ||||||||||||||
Sbjct 1522 CCTGGGAGATTTGATCGTGTTGTTACGGTGGAATCACCTGACAAAGTTGGAAGAGAATCC 1581
Query 1524 ATTTTGAGAGTACATGTGTCAAAGAAAGAGCTTCCTTTGGGAGATGATGTCAACCTCGGT 1583
|| |||| ||| ||||| |||||||||||||||||||||||| ||||||||||||| | |
Sbjct 1582 ATATTGAAAGTGCATGTTTCAAAGAAAGAGCTTCCTTTGGGAAATGATGTCAACCTAGCT 1641
Query 1584 AGTATTGCCTCAATGACCACTGGTTTCACGGGGGCAGATCTTGCAAACTTGGTAAATGAG 1643
|||| |||||||||||| || ||||| || |||||||| ||||| ||| | || ||||||
Sbjct 1642 AGTAGTGCCTCAATGACAACCGGTTTTACTGGGGCAGACCTTGCGAACCTAGTTAATGAG 1701
Query 1644 GCTGCCTTGCTAGCTGGAAGAAAGAACAAGACGAAC-GTTGAGAAAATTGACTTCATTCA 1702
||||| || ||||| ||||| |||| ||||| || | ||||| |||||||||||||||||
Sbjct 1702 GCTGCTTTACTAGCGGGAAGGAAGAGCAAGATGA-CTGTTGAAAAAATTGACTTCATTCA 1760
Query 1703 AGCTGTGGAGCGATCAATAGCGGGCATAGAGAAGAAATCTGCAAGATTAAAAGGCAATGA 1762
||||| |||||||| ||||||||||||||||||||| ||||||| |||||||| | |||
Sbjct 1761 GGCTGTCGAGCGATCTATAGCGGGCATAGAGAAGAAAACTGCAAGGTTAAAAGGTAGTGA 1820
Query 1763 GAAGGCAGTG 1772
||| || |||
Sbjct 1821 GAAAGCTGTG 1830
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104748173750
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5