BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G47070.1

Length=669
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg937450 jgi|Araly1|937450|scaffold_501641.1                        499    9e-141


> Ahg937450 jgi|Araly1|937450|scaffold_501641.1
Length=344

 Score =  499 bits (270),  Expect = 9e-141
 Identities = 324/349 (93%), Gaps = 8/349 (2%)
 Strand=Plus/Plus

Query  207  aagagagagagaTAACAACAATGGTTTCTTCGCTTCTTATGTCATTTGCTCCGGCCACCG  266
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    AAGAGAGAGAGATAACAACAATGGTTTCTTCGCTTCTTATGTCATTTGCTCCGGCCACCG  60

Query  267  TGAGGGTTTACGCCACAAGCACAAAGGGAGGTTCAGGCGGCCCAAAGGAGGAGAAGAATC  326
            |||||||||||||||| ||||||||||||| |||||||||  |||||||||||||||| |
Sbjct  61   TGAGGGTTTACGCCACTAGCACAAAGGGAGCTTCAGGCGGTGCAAAGGAGGAGAAGAACC  120

Query  327  CCATCGACTTTGTTCTTGGGTTTATGACAAAACAAGATCAGTTCTATGAGACTAATCCAC  386
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| 
Sbjct  121  CCATCGACTTTGTTCTTGGGTTTATGACAAAACAAGATCAGTTCTACGAGACTAATCCAA  180

Query  387  TTCTAAAGAAGGTGGATGAGAAAGAAGGCACCACCACCGGAGGCCGAGGAACCGTTCGCG  446
            |||||||||||||||| ||||||||||||||||||   ||||||||||||||||||||||
Sbjct  181  TTCTAAAGAAGGTGGAGGAGAAAGAAGGCACCACC---GGAGGCCGAGGAACCGTTCGCG  237

Query  447  GTGGTAAAAACTCAGCTCCGACGCCTGTGCCG---AAGAAGAGCGAGGGTGGATTTGGTG  503
            | || |||||||||||||| ||||| ||||||   |||||||||||||||||||||||||
Sbjct  238  GCGGCAAAAACTCAGCTCCCACGCCAGTGCCGCCGAAGAAGAGCGAGGGTGGATTTGGTG  297

Query  504  GCTTAGGAAGCCTCTTCAAGAAATAGAAGaaaaaaaTGTATAGTAATTT  552
            | || ||  |||||||||| ||||||||||||||  |||||||||||||
Sbjct  298  GATTTGGTGGCCTCTTCAAAAAATAGAAGAAAAA--TGTATAGTAATTT  344



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24551158548


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5