BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G47080.1
Length=2026
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485085 jgi|Araly1|485085|fgenesh2_kg.5__1077__AT3G47080.1 2955 0.0
> Ahg485085 jgi|Araly1|485085|fgenesh2_kg.5__1077__AT3G47080.1
Length=2039
Score = 2955 bits (1600), Expect = 0.0
Identities = 1911/2055 (93%), Gaps = 45/2055 (2%)
Strand=Plus/Plus
Query 1 TCTTCTTCTTCTCTGTTTCTAACAAAGTTCAGGAG--CTCTCGTAAGCCTCTGAATTCGA 58
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1 TCTTCTTCTTCTCTGTTTCTAACAAATTTCAGGAGTTCTCTCGTAAGCCTCTGAATTCGA 60
Query 59 TTTGACCTGACAACCATACAAAAAATTCTCCCGAGAAAATCTCTCTCTCAACGAACGAAT 118
|||||||| |||||||| | |||||| ||||||||||| |||||||||||||||||||
Sbjct 61 TTTGACCTCACAACCAT--ATAAAATTTTCCCGAGAAAA--TCTCTCTCAACGAACGAAT 116
Query 119 TTCGAATCACCAAGAAGAAATTCTGAGATTTGTTTGCGTTTCATCGGAATAATGGAAGTG 178
||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||
Sbjct 117 TTCGAATCACCAAGAAGAAATTCTGAGATTTTTTTGCGTTTCATCGGAACAATGGAGGTA 176
Query 179 AAAGTAGCAACAACGACGTCGTTTCATTGGTCAGGACGACACACAGCGATTCCTCAATGT 238
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 177 AAAGTAGCAACAACGACGTCGTTTCATTGGTCAGGACGTCACACGGCGATTCCTCAATGT 236
Query 239 CCGTCATTTTCGCAAACCCTAACTTCATCTAAACGCCGTCGTTCTCGTGGAATAGCCGGT 298
||||||||||||||||||||||||||||| ||||||||||||||||| | || |||||||
Sbjct 237 CCGTCATTTTCGCAAACCCTAACTTCATCAAAACGCCGTCGTTCTCGAGTAAAAGCCGGT 296
Query 299 GATGTTTCCGTCGGAGGAGGATCTTTGAGATTAAAACCTTCGACGTTTCTCGGAACACAA 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GATGTTTCCGTCGGAGGAGGATCTTTGAGATTAAAACCTTCGACGTTTCTCGGAACACAA 356
Query 359 TCTGGGAAACTTCACCGATCTAAATCATGTGAGCTTTGGCAATTTTCTAATTCCACCACG 418
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 357 TCTGGGAAACTTCACCGATCTAAATCATGTGAGCTTTGGGAATTTTCTAATTCCGCCACG 416
Query 419 AAGAAGATTAGAACTGATGTGAAGAAGAAACATAATCCTTTGAGAAGAGTTTGTAGTGCG 478
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 417 AAGAAGATAAGAACTGATGTGAAGAAGAAACATAATCCTTTAAGAAGAGTTTGTAGTGCA 476
Query 479 AGCTCCGGTTTCTTCTCCTCCGACGAAGCATTCTCTGTGAAAATGCAGGAATTAGCTTCA 538
||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 477 AGCTCCGATTTCTTCTCC---GACGAAGCATTCTCTGTGAAAATGCAGGAATTAGCCTCA 533
Query 539 CAATTCAGAAACGCAGGCGATGAAGAAGAAGAAGAGAACAAACAGAAATCAGAAGCAGTA 598
|||||||||||| | ||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 534 CAATTCAGAAACTCCTTCGAAGAATCAGAAGAAGAGAACAAACAGAAATCAGAAGCAGTA 593
Query 599 GATAACGATAACGATAGCAATAATCATAGATTTGGTTCTTTGAAGCTATTACAAGAGTCT 658
|||||||||||||||| ||| |||||||||||||||||| |||||||||| |||||||||
Sbjct 594 GATAACGATAACGATAACAAGAATCATAGATTTGGTTCTATGAAGCTATTGCAAGAGTCT 653
Query 659 GTTCCAGGTTTAGCTTCTTTGGAAGCTCCATGGGCAGAGATGGTTAACCATTCAAGTATT 718
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 654 GTTCCAGGTTTAGCTTCGTTGGAAGCTCCATGGGCAGAGATGGTTAACCATTCAAGCATT 713
Query 719 GAGCGTAAAGCAAACAGTGTTGATTTACCTCTATCACTTAGGATAATAAAGAGGAAGTTA 778
|| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 714 GAAAGGAAAGCAAACAGTGTTGATTTACCTCTATCACTTAGGATAATAAAGAGGAAGCTA 773
Query 779 CAAGAAGAAGCTCTTAA-GAAAGCTAGTGCTACTACTTACTGTTCTATCAATAGAGCTTT 837
||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 774 CAAGAAGAAGCGCTTAAAGAA-GCTAGTGCTACTACTTACTGTTCTATCAATAGAGCTTT 832
Query 838 TTCTTCTATGGTTTTCATGATTGAGGAGCTTCATAGCTTTGCGTTGCAGACTAGAGTGGG 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 833 TTCTTCTATGGTTTTCATGATTGAGGAGCTTCATAGCTTTGCGTTGCAGACTAGAGTTGG 892
Query 898 TGTTCTTAAGCAGGTTAAGAAGGAAATGCACGCTTCATTGTTGTGGATTTTCCAACGTGT 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 TGTTCTTAAGCAGGTTAAGAAGGAAATGCACGCTTCATTGTTGTGGATTTTCCAACGTGT 952
Query 958 GTTCTCTCAGACACCTACTTTGATGGTTTATGTGATGATCCTT-TTGGCGAACTACACTG 1016
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 953 GTTCTCTCAGACACCTACTTTGATGGTTTATGTGATGATC-TTATTGGCGAACTACACTG 1011
Query 1017 TGCATTCAGTTGCATCAAACCTACCTATTGCAGCATCTCCTCCA------G-T-TG-TTA 1067
|||||||||||||||| || ||| ||||||| ||| |||||||| | | || |||
Sbjct 1012 TGCATTCAGTTGCATCGAATCTAGCTATTGCGGCAGCTCCTCCACACTCTGATGTGGTTA 1071
Query 1068 ATAAAGGTCCGGATCAGACGCAACAAAGGATTGATTTTTCTTCGTTA--AAG-G--AG-- 1120
|||||||| ||||| || ||| ||||||||||||| | ||| ||| | ||
Sbjct 1072 CTAAAGGTCTGGATCGGATACAAGAAAGGATTGATTTAGGGCCTTTAGTAAGTGGCAGAG 1131
Query 1121 -TC-TACGAAGCTTGATGGGTCCAAATGGTTAGGATCGATCAATTTTGACAAGGTTTCCC 1178
| || | ||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1132 ATGGTAAGGAGCTTGATGGGTCCAAATGGTTAGGATCGATGAATTTTGACAAGGTCTCCC 1191
Query 1179 ACTTGCCGAGACATCGAGACTCGGTTTCAGGAGAAGGGATGAGAGAAGAGGAGGTGAGTC 1238
|||| |||| |||||||||||| ||||| ||||||||||||||||||||||| |||||||
Sbjct 1192 ACTTACCGACACATCGAGACTCCGTTTCCGGAGAAGGGATGAGAGAAGAGGAAGTGAGTC 1251
Query 1239 TGTGGAATTCGATGGTGGAAGAAGCAGATCAAATGCAAGATTCCTCTGTTGATCGTGACA 1298
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1252 TGTGGAATTCGATGGTGGAAGAAGCAGATCAAATGCAAGATTCCTCTGTTGATCGTGATA 1311
Query 1299 TGAGATTGAGACTTGTTTCACCGATCACTGCAAGGATTGAATTGGATGATTATGCCAATT 1358
||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 1312 TGAGATTGAGACTGGTTTCACCGATCAATGCAAGGATTGAATTGGACGATTATGCCAATT 1371
Query 1359 ACACTAGAACTGAGCTTTTATATAAGATAGGTTTGGCTCAAGAGCCTGA-CAATCATCTG 1417
|||||||||| ||||||||||||||||||||||||||||||||||| || ||| ||||||
Sbjct 1372 ACACTAGAACAGAGCTTTTATATAAGATAGGTTTGGCTCAAGAGCC-GAACAACCATCTG 1430
Query 1418 CTCCTAGCTAACTACGCTCAGTTCCTTTACCTCGTTACTCAAGACCATGAGAGAGCGGAG 1477
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1431 CTCCTAGCTAACTACGCTCAGTTCCTTTACCTCGTCACTCAAGACCATGAGAGAGCGGAG 1490
Query 1478 AACTGCTTCAAGAAAGCAATAGAGTCAGAAGATGTAGACGCAGAAACGTACAGCAAATAC 1537
||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||
Sbjct 1491 AACTGCTTCAAGAAAGCTATAGAGTCAGAAGATGTAGATGCAGAAGCGTACAGCAAATAC 1550
Query 1538 GCCATCTTCCTGTGGAAAGTTCGGAATGATCTCTGGGCTGCTGAGGAGAACTTTCTAGAA 1597
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1551 GCCATCTTCCTGTGGAAAGTTCGGAACGATCTCTGGGCTGCTGAGGAGAACTTTCTAGAA 1610
Query 1598 GCTATATCTGCAGACCCTACCAACTCCT-TCTACGCCGCCAACTACGCCAATTTCCTCTG 1656
|||||||||| ||||||||||||||||| | ||||| |||||||||||||| ||||||||
Sbjct 1611 GCTATATCTGTAGACCCTACCAACTCCTAT-TACGCAGCCAACTACGCCAACTTCCTCTG 1669
Query 1657 G-AATACCGGTGGTGAAGAGACGTGTTTCCCTTTAGAAGATTCTACTCAGGAAATGGTTT 1715
| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1670 GCAA-ACCGGTGGTGAAGAGACGTGTTTCCCTTTAGAAGATTCTCCTCAGGAAATGGTTT 1728
Query 1716 GAGAAGGAGCGAATGGCAGTGAATGGATGTTGGTTTGTTTGGAGTGAAGAGACAGCGACA 1775
||||| |||||||||||||||||||| ||| ||||| |||| |||||||||||||| ||
Sbjct 1729 GAGAACGAGCGAATGGCAGTGAATGG-TGT-GGTTTATTTGCAGTGAAGAGACAGCTAC- 1785
Query 1776 CGGAACTTAGGTACACGATAGAAGCAAG-AGGAAAAGTGTAAGTAGTGTTTTTGAGTGAA 1834
|||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1786 -GGAACTTAGGTACACGATAGAAGCGAGGAGGAAAAGTGTAAGTAGTGTTTTTGAGTGAA 1844
Query 1835 CCATTGCGGCTGATGAAACATTGCTTCTCTTTGGTTCttttttctttttgcttttgccta 1894
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1845 CCAGTGCGGCCGATGAAACATTGCTTCTCTTTGGTTCTTTTTTCTTTTTGCTTTTGCCTA 1904
Query 1895 atttttCACTCAGTAGTATATACGGTCGCAGATTCCATCGAATAAGAA---CATGTGTAG 1951
|||||||||||||||||||| |||| |||||||||||||||||||||| || ||||||
Sbjct 1905 ATTTTTCACTCAGTAGTATACACGGACGCAGATTCCATCGAATAAGAAGAACAAGTGTAG 1964
Query 1952 ATCCAACACTATTACACGAATAATAAACACTGAGCATTGCTTTTGGTGAAATAATAAGTG 2011
||||||||||||||||| |||||||||||||| | ||| ||||||||||||||||||||
Sbjct 1965 ATCCAACACTATTACACTAATAATAAACACTGGGTATTATTTTTGGTGAAATAATAAGTG 2024
Query 2012 CGCATATTTGAATCG 2026
||||||||| ||||
Sbjct 2025 AGCATATTTGGATCG 2039
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76180490000
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5