BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G47110.1
Length=3078
Score E
Sequences producing significant alignments: (Bits) Value
Ahg347817 jgi|Araly1|347817|fgenesh1_pg.C_scaffold_5001209 5007 0.0
Ahg488953 jgi|Araly1|488953|fgenesh2_kg.6__2087__AT5G20480.1 399 5e-110
> Ahg347817 jgi|Araly1|347817|fgenesh1_pg.C_scaffold_5001209
Length=3069
Score = 5007 bits (2711), Expect = 0.0
Identities = 2954/3072 (96%), Gaps = 13/3072 (0%)
Strand=Plus/Plus
Query 1 ATGGGGGTTCCTTGTATTGTTATGAGACTGATTCTTGTATCTGCTTTACTTGTCTCTGTG 60
|||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1 ATGGGGTTTCCTTGTATTGTTATGAGGCTGATTCTTGTATCTGCTTTACTAGTCTCTGTG 60
Query 61 TCACTTGAACATTCAGATATGGTCTGTGCACAAACAATCAGATTGACGGAGGAGACTGAT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCACTTGAACATTCAGATATGGTCTGTGCACAAACAATCAGATTGACGGAGGAGACTGAT 120
Query 121 AAACAAGCATTGCTTGAGTTCAAGTCTCAAGTTTCTGAAACAAGTAGAGTTGTGTTGGGC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAACAAGCATTGCTTGAGTTCAAGTCTCAAGTTTCTGAAACAAGTAGAGTTGTGTTGGGC 180
Query 181 TCGTGGAATGACTCCCTGCCTCTCTGTAGCTGGACCGGTGTTAAGTGTGGCCTCAAACAC 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 181 TCGTGGAATGACTCCCTGCCTCTCTGTAGCTGGACCGGAGTTAAGTGTGGCCTCAAACAC 240
Query 241 AGGAGAGTAACTGGTGTGGATCTTGGAGGACTAAAACTAACCGGTGTAGTCTCTCCCTTT 300
|| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 241 AGAAGAGTAACTGGTGTGGATCTTGGAGGACTGAAACTAACTGGTGTAGTCTCTCCCTTT 300
Query 301 GTTGGTAACCTCTCATTTCTTAGATCTTTGAATCTTGCAGACAACTTTTTCCATGGTGCC 360
|| ||||||||||||||||||||||| || |||||||||||||||||||||| |||||||
Sbjct 301 GTCGGTAACCTCTCATTTCTTAGATCATTAAATCTTGCAGACAACTTTTTCCGTGGTGCC 360
Query 361 ATCCCTTCAGAGGTTGGAAACTTGTTCAGGCTTCAATATTTGAACATGAGCAATAATTTA 420
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ATCCCTTTAGAGGTTGGAAACTTGTTCAGGCTTCAATATTTGAACATGAGCAATAATTT- 419
Query 421 T-TTGGAGGGGTGATTCCGGTTGTTCTGTCGAACTGCTCTAGCCTGTCAACACTTGATTT 479
| ||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||
Sbjct 420 TCTTGGAGGGGTGATCCCGGTTGTTCTGTCGAACTGCTCTAGTCTTTCAACACTTGATTT 479
Query 480 ATCATCAAATCATCTTGAACAAGGCGTGCCTTTGGAGTTTGGTTCGCTGTCTAAGCTTGT 539
||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||
Sbjct 480 ATCATCAAATCATCTTGAACAAGGCGTGCCTTTTGAGTTCGGTTCACTGTCTAAGCTTGT 539
Query 540 CCTTCTCTCTCTTGGTAGAAACAATCTAACAGGGAAGTTTCCTGCCTCATTGGGAAACCT 599
| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CATTCTATCTCTTGGTACAAACAATCTAACAGGGAAGTTTCCTGCCTCATTGGGAAACCT 599
Query 600 GACATCACTCCAGATGCTCGATTTTATATATAACCAAATAGAAGGAGAGATCCCTGGGGA 659
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 600 GACATCACTCCAAATGCTCGATTTTATATATAACCAAATAGAAGGAGAGATCCCTGGGAA 659
Query 660 TATAGCCAGACTGAAACAGATGATCTTTTTCCGAATAGCATTAAACAAGTTTAATGGGGT 719
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 660 TATAGCCAGACTGAAACAGATGGTCTTTTTCCGAATAGCATTAAACAAGTTTAATGGTGT 719
Query 720 TTTCCCTCCTCCAATTTACAACCTGTCTTCACTAATATTCCTGTCCATTACCGGCAACAG 779
||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 720 TTTCCCTCCTCCAGTTTACAACCTGTCCTCACTAATTTTCCTGTCCATTACCGGCAACAG 779
Query 780 TTTCTCTGGCACCCTTAGACCTGACTTTGGTTCTCTTCTCCCTAACCTTCAAATACTATA 839
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TTTCTCTGGCACCCTTAGGCCTGACTTTGGTTCTCTTCTCCCTAACCTTCAAATACTATA 839
Query 840 TATGGGGATAAATAGTTTCACGGGTACCATTCCAGAGACACTTTCCAATATCTCAAGT-C 898
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |
Sbjct 840 TATGGGGATAAATAATTTCACGGGTACCATTCCAGAGACACTTTCCAATATCTCA-GTTC 898
Query 899 TTCGACAACTTGATATTCCGTCTAACCATCTTACTGGAAAGATACCATTGAGTTTCGG-A 957
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 899 TTCAACAGCTTGATATTCCGTCTAACCATCTTACTGGAAAGATACCATTGAGTTTTGGGA 958
Query 958 AGACTTCAGAATCTATTACTGCTAGGCCTTAATAATAACTCTCTGGGAAACTACTCTTCT 1017
| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 959 A-ACTTCAGAATTTATTACAGCTAGGCCTTAATAATAACTCTCTGGGAAACTACTCTTCT 1017
Query 1018 GGTGATCTTGATTTTCTTGGTGCACTGACTAACTGCAGTCAGTTGCAGTATTTGAATGTT 1077
||||||||||||||||||||| |||||||||||||||||||||||||||| |||| | ||
Sbjct 1018 GGTGATCTTGATTTTCTTGGTACACTGACTAACTGCAGTCAGTTGCAGTACTTGAGTTTT 1077
Query 1078 GGCTTCAACAAACTCGGCGGTCAGTTGCCTGTCTTTATAGCCAATCTCTCCACCCAATTA 1137
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1078 GGCTTCAACAAACTTGGCGGTCAGTTACCTGTCTTTATAGCCAATCTCTCCACCCAATTA 1137
Query 1138 ACTGAGCTCTCTCTTGGTGGAAATCTCATCTCTGGAAGTATTCCTCATGGCATAGGGAAT 1197
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 ACTGAGCTCTCCCTTGGTGGAAATCTCATCTCTGGAAGTATTCCTCATGGCATAGGGAAT 1197
Query 1198 CTTGTAAGCCTGCAAACATTAGACTTGGGCGAAAATCTGTTGACAGGCAAACTTCCTCCC 1257
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 CTCGTAAGCCTGCAAACATTAGACTTGGGCGAAAATCTGTTGACAGGCAAACTTCCTCCC 1257
Query 1258 TCATTGGGAGAACTTTCTGAATTGAGAAAAGTCTTGCTCTATTCAAATGGACTGTCTGGA 1317
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1258 TCATTGGGAGAACTTTCTGAACTGAGAAAAGTCTTGCTCTATTCAAATGGACTGTCTGGA 1317
Query 1318 GAGATACCATCTTCCTTGGGGAATATCAGTGGGCTAACATACCTGTATCTGCTTAACAAC 1377
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1318 GAGATACCATCTTCCTTGGGGAATATCAGTGGGCTAACATACCTGTATTTGCTTAACAAC 1377
Query 1378 AGTTTTGAAGGAAGCATCCCTTCAAGTCTTGGAAGTTGCAGCTACCTTCTAGACTTGAAC 1437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 AGTTTTGAAGGAAGCATCCCTTCAAGTCTTGGAAGTTGCAGCTACCTTCTAGACTTGAAC 1437
Query 1438 CTCGGTACTAATAAGTTGAATGGCAGCATACCCCATGAGCTTATGGAACTTCCATCTCTT 1497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 CTCGGTACTAATAAGTTGAATGGCAGCATACCCCATGAGCTTATGGAACTTCCATCTCTT 1497
Query 1498 GTCGTCTTAAATGTCTCATTTAATTTGTTGGTTGGCCCTTTGAGACAAGACATTGGAAAG 1557
|||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 1498 GTCGTCTTAAATGTTTCATTTAATTTGTTGGTTGGCCCTTTGAGAGAAGATGTTGGAAAG 1557
Query 1558 CTTAAATTTCTATTAGCTCTAGACGTTTCATACAATAAACTATCAGGACAGATTCCACAA 1617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 CTTAAATTTCTATTAGCTCTAGACGTTTCATACAATAAACTATCAGGACAGATTCCACGG 1617
Query 1618 ACCTTGGCGAATTGTCTCTCACTAGAATTCCTTTTGCTGCAAGGGAATTCATTTGTTGGG 1677
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1618 ACCTTGGCGAATTGTCTCTCACTAGAATTCCTTTTGCTGCAAGGGAATTCATTTTTTGGG 1677
Query 1678 CCCATTCCAGATATAAGAGGGTTGACTGGCCTCAGATTCCTAGATCTGTCGAAGAATAAT 1737
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1678 TCCATTCCAGATATAAGAGGGTTGACTGGCCTCAGGTTCCTAGATCTGTCGAAGAACAAT 1737
Query 1738 CTCTCTGGTACAATACCTGAATATATGGCGAACTTTTCCAAACTGCAGAACCTGAATCTC 1797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1738 CTCTCTGGTACAATACCTGAATATATGGCGAACTTTTCCAAACTGCAGAACCTGAATCTC 1797
Query 1798 TCTTTGAACAACTTCGACGGAGCTGTGCCAACGGAAGGGGTATTTCGTAATACCAGTGCG 1857
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1798 TCTGTGAACAACTTCGAAGGAGCTGTGCCAACGGAAGGGGTATTTCGTAATACCAGTGCG 1857
Query 1858 ATGTCGGTCTTTGGTAACATAAACCTCTGTGGAGGCATCCCGTCATTACAGCTTCAGCCA 1917
|| |||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 1858 ATATCGGTCATTGGTAACATAAATCTCTGTGGAGGCATCCCGTCATTACAGCTTGAGCCA 1917
Query 1918 TGCTCTGTTGAATTACCAAGAAGGCATTCATCAGTCAGAAAGATAATCACCATTTGTGTC 1977
|||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 1918 TGCTCTGTAGAATTACCAGGAAGACATTCATCAGTCAGAAAGATAATCACCATTTGTGTC 1977
Query 1978 AGTGCAGTTATGGCAGCACTTTTGCTTCTATGTCTGTGTGTGGTTTATCTATGCTGGTAC 2037
||||||| ||||||||||||||| |||||||||||||| ||||||||||||||| |||||
Sbjct 1978 AGTGCAGGTATGGCAGCACTTTTCCTTCTATGTCTGTGCGTGGTTTATCTATGCCGGTAC 2037
Query 2038 AAACTGAGAGTGAAGAGTGTCAGAGCTAATAATAATGAGAATGATCGGTCTTTCTCCCCA 2097
|||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2038 AAACAGAGAATGAAGAGTGTCAGAGCTAACAATAATGAGAATGATCGGTCTTTCTCCCCA 2097
Query 2098 GTGAAATCGTTTTATGAAAAGATAAGTTATGATGAGCTCTACAAGACAACCGGTGGCTTC 2157
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2098 GTGAAATCGTTTTATGAAAAGATAAGTTACGATGAGCTCTACAAGACAACCGGTGGCTTC 2157
Query 2158 TCTTCCAGCAATTTGATTGGGTCGGGTAACTTTGGGGCTGTGTTTAAAGGATTTCTTGGG 2217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2158 TCTTCCAGCAATTTGATTGGGTCGGGTAACTTTGGGGCTGTGTTTAAAGGATTTCTTGGG 2217
Query 2218 TCCAAGAACAAGGCTGTTGCCATTAAAGTTTTGAATCTCTGCAAACGTGGTGCTGCAAAG 2277
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2218 TCTAAGAACAAGGCTGTTGCCATTAAAGTTTTGAATCTCTGCAAACGTGGAGCTGCAAAG 2277
Query 2278 AGTTTCATAGCGGAATGTGAAGCATTAGGAGGTATAAGGCATCGCAACCTTGTGAAGTTG 2337
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2278 AGTTTCATTGCAGAATGTGAAGCATTAGGAGGTATAAGGCATCGCAACCTTGTGAAGTTG 2337
Query 2338 GTTACTATCTGTTCAAGTTCTGATTTTGAAGGAAATGATTTTAGAGCTCTAGTGTATGAG 2397
|||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 2338 GTTACTGTCTGTTCAAGTGCTGATTTTGAAGGAAATGATTTTAGAGCTCTAGTTTATGAG 2397
Query 2398 TTCATGCCTAATGGAAACTTGGACATGTGGCTGCACCCGGATGAAATAGAAGAAACTGGC 2457
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2398 TTCATGTCTAATGGAAACTTGGACATGTGGTTGCACCCGGATGAAATAGAAGAAACTGGC 2457
Query 2458 AATCCCTCGAG-AACCCTGGGCCTTT-TTGCGAGACTCAACATTGCCATAGATGTTGCTT 2515
|||||||| || ||||||| || || ||| |||||||||||||| |||||||||||||
Sbjct 2458 AATCCCTC-AGGAACCCTGA-CCGTTGTTGAAAGACTCAACATTGCGATAGATGTTGCTT 2515
Query 2516 CGGCTCTGGTTTATCTTCATACTTATTGTCACAACCCTATAGCCCACTGTGATATTAAGC 2575
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2516 CGGCTTTGGTTTATCTTCATACTTATTGTCACAACCCTATAGCCCACTGTGATATTAAGC 2575
Query 2576 CAAGCAATATTCTACTAGACAAAGATTTGACTGCTCATGTAAGCGACTTTGGTTTGGCAC 2635
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2576 CAAGCAATATTCTACTTGACAAAGATTTGACTGCTCATGTAAGCGACTTTGGTTTGGCAC 2635
Query 2636 AACTCCTACTAAAATTTGATCGGGATACATTCCATATTCAATTCAGCTCTGCAGGTGTTC 2695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2636 AACTCCTACTAAAATTTGATCGGGATACATTCCATATTCAATTCAGCTCTGCAGGTGTTC 2695
Query 2696 GTGGAACCATTGGCTATGCTGCACCAGAATATGGTATGGGAGGTCATCCATCAATTATGG 2755
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2696 GTGGAACCATTGGATATGCTGCACCAGAATATGGTATGGGAGGTCATCCATCAATAATGG 2755
Query 2756 GAGACGTGTACAGTTTTGGTATTGTCCTATTGGAGATTTTCACTGGAAAAAGACCCACCA 2815
| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2756 GCGACGTGTACAGCTTTGGTATCCTCCTATTGGAGATTTTCACTGGAAAAAGACCCACCG 2815
Query 2816 ATAAGTTATTCGTGGACGGTTTAACTCTACATAGTTTTACTAAATCAGCATTGCAGAAAC 2875
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 2816 ATAAGTTATTCGTGGACGGTTTAACTCTCCATAGTTTTACTAAATCAGCATTGCCGAAAC 2875
Query 2876 GACAAGCACTAGATATCACAGACGAAA-CTATTCTCCGTGGTGCATATGCTCAGCATTTC 2934
||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||
Sbjct 2876 GACAAGCACTAGATATCACAGAC-AAATCTATTCTCCGTGGTGCATACGCTCAGCATTTC 2934
Query 2935 AATATGGTCGAATGCTTGACCCTTGTGTTTCGGGTGGGAGTCAGTTGTTCAGAAGAATCA 2994
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 2935 AATATGGTCGAATGCTTGACCCTTGTGTTTCAGGTTGGAGTCAGTTGTTCAGAAGAATCA 2994
Query 2995 CCGGTAAACCGGATATCAATGGCTGAGGCTATAAGCAAGCTGGTCTCTATCAGAGAAAGT 3054
||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||| |||
Sbjct 2995 CCGGTGAACCGGATATCAATGGCCGAGGCTGTAAGCAAGCTGGTCTCTATCAGAGAGAGT 3054
Query 3055 TTTTT-CAGAGA 3065
||||| | ||||
Sbjct 3055 TTTTTTCGGAGA 3066
> Ahg488953 jgi|Araly1|488953|fgenesh2_kg.6__2087__AT5G20480.1
Length=3299
Score = 399 bits (216), Expect = 5e-110
Identities = 1331/1848 (72%), Gaps = 162/1848 (9%)
Strand=Plus/Plus
Query 130 TTGCTTGAGTTCAAGTCTCAAGTTTCTGAAA-CAAGTAGAGTTGTGTTGGGCTCGTGGAA 188
||||||||||||||||||||||||||||||| |||| |||| || |||| ||| |||||
Sbjct 126 TTGCTTGAGTTCAAGTCTCAAGTTTCTGAAAACAAG-AGAGAGGTCTTGGCCTCATGGAA 184
Query 189 TGACTCCCTGCCTC-TC-TGTAGCTGGACCGGTGTTA-AGTGTGGCCTCAAACACAGGA- 244
| ||||| | || | | || | |||| || || | | ||||||| || || || |
Sbjct 185 TCACTCC-TCCC-CATTATGCAATTGGATTGGAGTCATA-TGTGGCCGCAGGCA-AGAAA 240
Query 245 GAGTAACTG-GTGTGGATCTTGGAGGACTAAAACTAACCGGTGT-AGTCTCTCCCTTTGT 302
|||| | | || || | || |||||| | || |||||||||| | |||| |||| |
Sbjct 241 GAGTTA-TAAGTCTGAACCTCGGAGGATTCAAGTTAACCGGTGTGA-TCTCACCCTCCAT 298
Query 303 TGGTAACCTCTCATTTCTTAGATCT-TTGAATCTTGCAGACAACT-TTTTCCATGGTGCC 360
|||||| ||||| ||||| || | | || ||||||| |||||||| |||| | | | ||
Sbjct 299 TGGTAATCTCTCCTTTCTCAGGTTTCTT-AATCTTGGAGACAACTCTTTTGGAAG-TACC 356
Query 361 ATCCCTTCA-GAGGTTGGAAA-CT-TGTTCAGGCTTCAATATTTGAACATGAGCAATAAT 417
|||||| || ||||| |||| || | || |||||||| || |||||||||||| |||||
Sbjct 357 ATCCCT-CAAGAGGTGGGAATGCTAT-TT-AGGCTTCAGTACTTGAACATGAGCTATAAT 413
Query 418 TTATTTGGAGGGGTG-ATTCCGGTT-GTTCTGTCGAACTGCTCTAGCCTGTCAACACTTG 475
| | | | || | |||||| | || || || || |||||||| ||||| || |||
Sbjct 414 CT-TCTCCAAGGAAGGATTCCGCCTAGT-CTTTCTAATTGCTCTAGACTGTCGACTGTTG 471
Query 476 ATTTATCATCAAATCATCTTGAACAAGGCGTGCCTTTGGAGTTTGGTTCGCTGTCTAAGC 535
||||||| ||||| || |||| ||| ||||| |||| || | ||||| || |||||||
Sbjct 472 ATTTATCGTCAAACCAGCTTGGACATGGCGTTCCTTCAGAACTAGGTTCACTTTCTAAGC 531
Query 536 TTGTCC-TTCTCTCTCTTGGTAGAAACAATCTAACAGGGAAGTTTCCTGCCTCATTGGGA 594
| | || |||| |||| ||| |||||| || ||||| || |||||||| || || |||
Sbjct 532 TGG-CCATTCTGGATCTTAGTAAAAACAACCTTACAGGAAATTTTCCTGCATCTTTTGGA 590
Query 595 AACCTGACATCACTCCAGATGCTCGATTTTATATATAACCAAATAGAAGGAGAGATCCCT 654
||| |||| |||||||||| ||| || ||| ||||||||| || | ||| ||||| ||
Sbjct 591 AACTTGACGTCACTCCAGAAGCTTGACTTTGCATATAACCAGATGGGAGGTGAGATTCCA 650
Query 655 GGGGATA-TAGCCAGACTGAAACAGATGATCTTTTTCCGAATAGCATTAAACAAGTTTA- 712
| || | |||| ||| ||| || ||| | ||||| | ||||||| | || | ||||
Sbjct 651 GACGA-AGTAGCTAGATTGACTCATATGGTGTTTTTTCAAATAGCACTGAATA-GTTTTT 708
Query 713 -ATGG-GGTTTTCCCTCCTCCAATT-TACAACCTGTCTTCACTA-A-TATTCCTGTC-CA 766
| || |||||||| |||| || || |||||| | || || || | | ||| | || |
Sbjct 709 CA-GGTGGTTTTCC-TCCTGCA-TTGTACAACATCTCCTCTCTTGAGT-TTC-TATCTC- 762
Query 767 TTACCGG-CAACAG-TTTCTCTGGCACCCTTAGACCTGACTTTGGTTCTCTTCTCCCTAA 824
| | | | ||| || ||| || || | |||||| |||| |||||| |||||| || ||
Sbjct 763 T-AGCTGACAATAGCTTT-TCGGGTAACCTTAGGGCTGATTTTGGTGATCTTCTACC-AA 819
Query 825 C-CTTCAA-ATA-CTATATATGGGGAT-AAAT-AGTTTCACGGGTACC-ATTCC-AGAGA 877
|| || || || | | | ||||| |||| |||| ||| || | | ||||| | | |
Sbjct 820 GTCT--AAGATGGCT-TCTTTTGGGATCAAATCAGTT-CACTGG-AGCTATTCCCATA-A 873
Query 878 CACTTTCCAATATCTCAAGTCTTCGACAAC-TT-GATAT-TCCGTCTAACCATCTTACTG 934
||||| ||||||||||||| ||| || | || ||||| || ||||| | || ||||
Sbjct 874 CACTTGCCAATATCTCAAGCCTT-GA-ATGGTTTGATATCTCA-TCTAATTACCTGACTG 930
Query 935 GAAAG-ATACCATTGAG-TTTCGGAAGACTT-CAG-AATCTATTACTGCT-AGGCCTTAA 989
||| | || || ||||| ||| |||| | || | | ||||| | || | ||| ||
Sbjct 931 GAA-GTATCCCTTTGAGCTTT-GGAA-AGTTAC-GTAATCTGTGG-TGGTTAGGAATTCG 985
Query 990 TAATAACTCTCTGGGAAACTA-CTCTTCTGGTGATCTTGATTTTCTTGGTGCACTGACTA 1048
|||||||||||| ||| | || ||| || ||| |||||| ||| ||||||| || | |
Sbjct 986 TAATAACTCTCTTGGATA-TAACTCGTCCAGTGGTCTTGAATTTATTGGTGCTTTGGCGA 1044
Query 1049 ACTGCAGTCAGTT-GCAGTATTT-GAATGTTGGCTT-CAACAAACTCGGCGGTCAGTTGC 1105
|||||| ||| || | |||| || || |||||| || ||| | ||| || ||| || |||
Sbjct 1045 ACTGCACTCAATTAG-AGTACTTAGA-TGTTGG-TTACAATAGACTTGGAGGTGAGCTGC 1101
Query 1106 CTGTCTTTATAGCCAATCTCTCCACCCAATTAACTGAGCTCTCT-C-TTGGTGGAAATCT 1163
||| || || |||||||| ||||| |||| ||| || ||| | | |||| ||||||
Sbjct 1102 CTGCCTCCATGGCCAATCTGTCCACTAAATTGACT-AG-TCTGTTCCTTGGACAAAATCT 1159
Query 1164 CATCTCTGGAAGTATTCCTCATGGCATAGGGAATCTTGTAAGCCTGCAA-ACATT-AGAC 1221
|||||||||| |||||| | | ||| ||||||||| ||||||||||| | | | ||
Sbjct 1160 TATCTCTGGAACCATTCCTTACGACATCGGGAATCTTATAAGCCTGCAAGA-ACTCAGT- 1217
Query 1222 TTGGGCGA-AAATCTGTTGACAGGCA-AACTTCCTCCCTCATTGGGAGAA-CTTTCTGAA 1278
|||| | |||| |||| | || | ||||||| ||| || || ||| |||| ||||
Sbjct 1218 TTGGAA-ACAAATAAGTTGTCTGG-AGAACTTCCAGTCTCTTTCGG-GAAGCTTT-TGAA 1273
Query 1279 TT-G-AGAAAAGTCT-TGCTCTATTCAAATGGACTGTCTGGAGAGATACCATCTTCCTTG 1335
|| | || || | ||||||||||||| | | || || || |||||||||| ||
Sbjct 1274 TTTGCAGGTG-GTGGAT-CTCTATTCAAATGCAATATCGGGGGAAATACCATCTTATTTT 1331
Query 1336 GGGAATATCAGTGGGCTAACATAC-CTGTATCTGCTTAACAACAGTTTTGAAGGAAGCAT 1394
|| || || | | || | || | || || || || ||| ||||| | ||||| ||
Sbjct 1332 GGCAACATGACTCGGTTG-CAGAAGCTCCATTTGAATAGCAATAGTTTCCACGGAAGAAT 1390
Query 1395 CCCTTCA-AGTCTTGGAAGTTG-CAGCTACCTT-CTAGAC-T-TGAACCTCGGTACTAAT 1449
|||| || ||||||||| |||| || ||| || |||||| | || | | | ||| |||
Sbjct 1391 CCCT-CAGAGTCTTGGACGTTGTCAA-TAC-TTGCTAGACCTGTGGAT-T-GATACAAAT 1445
Query 1450 AAGTTGAATGGCAGC-ATACCCCATGAGCTTA-TGGAACTTCCATCTCTTGTCGT-CTTA 1506
| ||||||||| | | ||||| | || | | || || |||| || || | | | | ||
Sbjct 1446 AGGTTGAATGGGA-CTATACCTCGGGAAAT-ACTGCAAATTCCGTCCCTCG-CTTACATA 1502
Query 1507 AATGTCTCATTTAATTTGTTGGTTGGCCCTTTGAGACAAGACA-TTGGAAAGCTTA-AAT 1564
|| | ||| ||||| ||| |||| ||| | |||| | |||||||| || ||
Sbjct 1503 GATTTGTCAAACAATTTCTTGACCGGCCATTTTCCAGAAGA-AGTTGGAAAG-TTGGAAC 1560
Query 1565 TTCTA-TTAGCTCTAGACGTTTCATACAATAAACTATCAGGACAGATTCCACAAACCT-T 1622
|||| || | |||| | ||| ||||| ||| ||||||||||||| |||||| | | |
Sbjct 1561 TTCTTGTTGGA-CTAGGTGCTTCGTACAACAAATTATCAGGACAGATCCCACAAGC-TAT 1618
Query 1623 -GGCGAATTGTCTCTC-ACTAGAATTCCTTT-TGCTGCAAGGGAATTCATTTGTTGG-GC 1678
|| | ||||||||| | | ||||| |||| | ||||||| ||||| |||| || ||
Sbjct 1619 AGGGGG-TTGTCTCTCGA-TGGAATTTCTTTATA-TGCAAGGAAATTCGTTTGACGGAGC 1675
Query 1679 CCATTCCAGATATAAGAGGGTTGACTG-GCCTCA-GATTCCTAGATCTG-TCGAAGAATA 1735
| |||||||||||||| ||||| | |||| | || | | || || || || || |
Sbjct 1676 C-ATTCCAGATATAAGTCGGTTGG-TAAGCCTAACGAATGTT-GA-CTTCTCCAACAACA 1731
Query 1736 ATCTCTCTGGTACA-ATACCT-GAATATATGGCGAACTTTTCCAAACT-GCAGAAC-CTG 1791
|||||||||| | |||||| || ||| |||| || | | || | || ||| |||
Sbjct 1732 ATCTCTCTGGC-CGGATACCTCGA-TATCTGGCCAA-TCTACCTTTGTTGC-GAAATCTG 1787
Query 1792 AATCTCTCTTTGAACAACTTCGACGGA-GCTGTGCCAACGGA-AGGGGTATTTCGTAATA 1849
||||| ||| ||||||| || || ||| || |||||||| | ||| || || || |||
Sbjct 1788 AATCTTTCTATGAACAATTTTGAGGGAAGC-GTGCCAACA-ACAGGAGTGTTCCGAAATG 1845
Query 1850 CCAGTGC-GATGTCGGTCTTTGGTAACATAAACCTCTGTGGAGGCATC 1896
| | || | | || || |||||||||| ||| | || |||||||||
Sbjct 1846 CTACAGCAGTT-TCTGTTTTTGGTAACAAAAATATATGCGGAGGCATC 1892
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 116251427740
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5