BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G47110.1 Length=3078 Score E Sequences producing significant alignments: (Bits) Value Ahg347817 jgi|Araly1|347817|fgenesh1_pg.C_scaffold_5001209 5007 0.0 Ahg488953 jgi|Araly1|488953|fgenesh2_kg.6__2087__AT5G20480.1 399 5e-110 > Ahg347817 jgi|Araly1|347817|fgenesh1_pg.C_scaffold_5001209 Length=3069 Score = 5007 bits (2711), Expect = 0.0 Identities = 2954/3072 (96%), Gaps = 13/3072 (0%) Strand=Plus/Plus Query 1 ATGGGGGTTCCTTGTATTGTTATGAGACTGATTCTTGTATCTGCTTTACTTGTCTCTGTG 60 |||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 1 ATGGGGTTTCCTTGTATTGTTATGAGGCTGATTCTTGTATCTGCTTTACTAGTCTCTGTG 60 Query 61 TCACTTGAACATTCAGATATGGTCTGTGCACAAACAATCAGATTGACGGAGGAGACTGAT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TCACTTGAACATTCAGATATGGTCTGTGCACAAACAATCAGATTGACGGAGGAGACTGAT 120 Query 121 AAACAAGCATTGCTTGAGTTCAAGTCTCAAGTTTCTGAAACAAGTAGAGTTGTGTTGGGC 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 AAACAAGCATTGCTTGAGTTCAAGTCTCAAGTTTCTGAAACAAGTAGAGTTGTGTTGGGC 180 Query 181 TCGTGGAATGACTCCCTGCCTCTCTGTAGCTGGACCGGTGTTAAGTGTGGCCTCAAACAC 240 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 181 TCGTGGAATGACTCCCTGCCTCTCTGTAGCTGGACCGGAGTTAAGTGTGGCCTCAAACAC 240 Query 241 AGGAGAGTAACTGGTGTGGATCTTGGAGGACTAAAACTAACCGGTGTAGTCTCTCCCTTT 300 || ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| Sbjct 241 AGAAGAGTAACTGGTGTGGATCTTGGAGGACTGAAACTAACTGGTGTAGTCTCTCCCTTT 300 Query 301 GTTGGTAACCTCTCATTTCTTAGATCTTTGAATCTTGCAGACAACTTTTTCCATGGTGCC 360 || ||||||||||||||||||||||| || |||||||||||||||||||||| ||||||| Sbjct 301 GTCGGTAACCTCTCATTTCTTAGATCATTAAATCTTGCAGACAACTTTTTCCGTGGTGCC 360 Query 361 ATCCCTTCAGAGGTTGGAAACTTGTTCAGGCTTCAATATTTGAACATGAGCAATAATTTA 420 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 ATCCCTTTAGAGGTTGGAAACTTGTTCAGGCTTCAATATTTGAACATGAGCAATAATTT- 419 Query 421 T-TTGGAGGGGTGATTCCGGTTGTTCTGTCGAACTGCTCTAGCCTGTCAACACTTGATTT 479 | ||||||||||||| |||||||||||||||||||||||||| || |||||||||||||| Sbjct 420 TCTTGGAGGGGTGATCCCGGTTGTTCTGTCGAACTGCTCTAGTCTTTCAACACTTGATTT 479 Query 480 ATCATCAAATCATCTTGAACAAGGCGTGCCTTTGGAGTTTGGTTCGCTGTCTAAGCTTGT 539 ||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||| Sbjct 480 ATCATCAAATCATCTTGAACAAGGCGTGCCTTTTGAGTTCGGTTCACTGTCTAAGCTTGT 539 Query 540 CCTTCTCTCTCTTGGTAGAAACAATCTAACAGGGAAGTTTCCTGCCTCATTGGGAAACCT 599 | |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 540 CATTCTATCTCTTGGTACAAACAATCTAACAGGGAAGTTTCCTGCCTCATTGGGAAACCT 599 Query 600 GACATCACTCCAGATGCTCGATTTTATATATAACCAAATAGAAGGAGAGATCCCTGGGGA 659 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 600 GACATCACTCCAAATGCTCGATTTTATATATAACCAAATAGAAGGAGAGATCCCTGGGAA 659 Query 660 TATAGCCAGACTGAAACAGATGATCTTTTTCCGAATAGCATTAAACAAGTTTAATGGGGT 719 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || Sbjct 660 TATAGCCAGACTGAAACAGATGGTCTTTTTCCGAATAGCATTAAACAAGTTTAATGGTGT 719 Query 720 TTTCCCTCCTCCAATTTACAACCTGTCTTCACTAATATTCCTGTCCATTACCGGCAACAG 779 ||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 720 TTTCCCTCCTCCAGTTTACAACCTGTCCTCACTAATTTTCCTGTCCATTACCGGCAACAG 779 Query 780 TTTCTCTGGCACCCTTAGACCTGACTTTGGTTCTCTTCTCCCTAACCTTCAAATACTATA 839 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 780 TTTCTCTGGCACCCTTAGGCCTGACTTTGGTTCTCTTCTCCCTAACCTTCAAATACTATA 839 Query 840 TATGGGGATAAATAGTTTCACGGGTACCATTCCAGAGACACTTTCCAATATCTCAAGT-C 898 |||||||||||||| |||||||||||||||||||||||||||||||||||||||| || | Sbjct 840 TATGGGGATAAATAATTTCACGGGTACCATTCCAGAGACACTTTCCAATATCTCA-GTTC 898 Query 899 TTCGACAACTTGATATTCCGTCTAACCATCTTACTGGAAAGATACCATTGAGTTTCGG-A 957 ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 899 TTCAACAGCTTGATATTCCGTCTAACCATCTTACTGGAAAGATACCATTGAGTTTTGGGA 958 Query 958 AGACTTCAGAATCTATTACTGCTAGGCCTTAATAATAACTCTCTGGGAAACTACTCTTCT 1017 | |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 959 A-ACTTCAGAATTTATTACAGCTAGGCCTTAATAATAACTCTCTGGGAAACTACTCTTCT 1017 Query 1018 GGTGATCTTGATTTTCTTGGTGCACTGACTAACTGCAGTCAGTTGCAGTATTTGAATGTT 1077 ||||||||||||||||||||| |||||||||||||||||||||||||||| |||| | || Sbjct 1018 GGTGATCTTGATTTTCTTGGTACACTGACTAACTGCAGTCAGTTGCAGTACTTGAGTTTT 1077 Query 1078 GGCTTCAACAAACTCGGCGGTCAGTTGCCTGTCTTTATAGCCAATCTCTCCACCCAATTA 1137 |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1078 GGCTTCAACAAACTTGGCGGTCAGTTACCTGTCTTTATAGCCAATCTCTCCACCCAATTA 1137 Query 1138 ACTGAGCTCTCTCTTGGTGGAAATCTCATCTCTGGAAGTATTCCTCATGGCATAGGGAAT 1197 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1138 ACTGAGCTCTCCCTTGGTGGAAATCTCATCTCTGGAAGTATTCCTCATGGCATAGGGAAT 1197 Query 1198 CTTGTAAGCCTGCAAACATTAGACTTGGGCGAAAATCTGTTGACAGGCAAACTTCCTCCC 1257 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1198 CTCGTAAGCCTGCAAACATTAGACTTGGGCGAAAATCTGTTGACAGGCAAACTTCCTCCC 1257 Query 1258 TCATTGGGAGAACTTTCTGAATTGAGAAAAGTCTTGCTCTATTCAAATGGACTGTCTGGA 1317 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1258 TCATTGGGAGAACTTTCTGAACTGAGAAAAGTCTTGCTCTATTCAAATGGACTGTCTGGA 1317 Query 1318 GAGATACCATCTTCCTTGGGGAATATCAGTGGGCTAACATACCTGTATCTGCTTAACAAC 1377 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1318 GAGATACCATCTTCCTTGGGGAATATCAGTGGGCTAACATACCTGTATTTGCTTAACAAC 1377 Query 1378 AGTTTTGAAGGAAGCATCCCTTCAAGTCTTGGAAGTTGCAGCTACCTTCTAGACTTGAAC 1437 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1378 AGTTTTGAAGGAAGCATCCCTTCAAGTCTTGGAAGTTGCAGCTACCTTCTAGACTTGAAC 1437 Query 1438 CTCGGTACTAATAAGTTGAATGGCAGCATACCCCATGAGCTTATGGAACTTCCATCTCTT 1497 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1438 CTCGGTACTAATAAGTTGAATGGCAGCATACCCCATGAGCTTATGGAACTTCCATCTCTT 1497 Query 1498 GTCGTCTTAAATGTCTCATTTAATTTGTTGGTTGGCCCTTTGAGACAAGACATTGGAAAG 1557 |||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||| Sbjct 1498 GTCGTCTTAAATGTTTCATTTAATTTGTTGGTTGGCCCTTTGAGAGAAGATGTTGGAAAG 1557 Query 1558 CTTAAATTTCTATTAGCTCTAGACGTTTCATACAATAAACTATCAGGACAGATTCCACAA 1617 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1558 CTTAAATTTCTATTAGCTCTAGACGTTTCATACAATAAACTATCAGGACAGATTCCACGG 1617 Query 1618 ACCTTGGCGAATTGTCTCTCACTAGAATTCCTTTTGCTGCAAGGGAATTCATTTGTTGGG 1677 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1618 ACCTTGGCGAATTGTCTCTCACTAGAATTCCTTTTGCTGCAAGGGAATTCATTTTTTGGG 1677 Query 1678 CCCATTCCAGATATAAGAGGGTTGACTGGCCTCAGATTCCTAGATCTGTCGAAGAATAAT 1737 |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 1678 TCCATTCCAGATATAAGAGGGTTGACTGGCCTCAGGTTCCTAGATCTGTCGAAGAACAAT 1737 Query 1738 CTCTCTGGTACAATACCTGAATATATGGCGAACTTTTCCAAACTGCAGAACCTGAATCTC 1797 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1738 CTCTCTGGTACAATACCTGAATATATGGCGAACTTTTCCAAACTGCAGAACCTGAATCTC 1797 Query 1798 TCTTTGAACAACTTCGACGGAGCTGTGCCAACGGAAGGGGTATTTCGTAATACCAGTGCG 1857 ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1798 TCTGTGAACAACTTCGAAGGAGCTGTGCCAACGGAAGGGGTATTTCGTAATACCAGTGCG 1857 Query 1858 ATGTCGGTCTTTGGTAACATAAACCTCTGTGGAGGCATCCCGTCATTACAGCTTCAGCCA 1917 || |||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||| Sbjct 1858 ATATCGGTCATTGGTAACATAAATCTCTGTGGAGGCATCCCGTCATTACAGCTTGAGCCA 1917 Query 1918 TGCTCTGTTGAATTACCAAGAAGGCATTCATCAGTCAGAAAGATAATCACCATTTGTGTC 1977 |||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||| Sbjct 1918 TGCTCTGTAGAATTACCAGGAAGACATTCATCAGTCAGAAAGATAATCACCATTTGTGTC 1977 Query 1978 AGTGCAGTTATGGCAGCACTTTTGCTTCTATGTCTGTGTGTGGTTTATCTATGCTGGTAC 2037 ||||||| ||||||||||||||| |||||||||||||| ||||||||||||||| ||||| Sbjct 1978 AGTGCAGGTATGGCAGCACTTTTCCTTCTATGTCTGTGCGTGGTTTATCTATGCCGGTAC 2037 Query 2038 AAACTGAGAGTGAAGAGTGTCAGAGCTAATAATAATGAGAATGATCGGTCTTTCTCCCCA 2097 |||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 2038 AAACAGAGAATGAAGAGTGTCAGAGCTAACAATAATGAGAATGATCGGTCTTTCTCCCCA 2097 Query 2098 GTGAAATCGTTTTATGAAAAGATAAGTTATGATGAGCTCTACAAGACAACCGGTGGCTTC 2157 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 2098 GTGAAATCGTTTTATGAAAAGATAAGTTACGATGAGCTCTACAAGACAACCGGTGGCTTC 2157 Query 2158 TCTTCCAGCAATTTGATTGGGTCGGGTAACTTTGGGGCTGTGTTTAAAGGATTTCTTGGG 2217 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2158 TCTTCCAGCAATTTGATTGGGTCGGGTAACTTTGGGGCTGTGTTTAAAGGATTTCTTGGG 2217 Query 2218 TCCAAGAACAAGGCTGTTGCCATTAAAGTTTTGAATCTCTGCAAACGTGGTGCTGCAAAG 2277 || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 2218 TCTAAGAACAAGGCTGTTGCCATTAAAGTTTTGAATCTCTGCAAACGTGGAGCTGCAAAG 2277 Query 2278 AGTTTCATAGCGGAATGTGAAGCATTAGGAGGTATAAGGCATCGCAACCTTGTGAAGTTG 2337 |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2278 AGTTTCATTGCAGAATGTGAAGCATTAGGAGGTATAAGGCATCGCAACCTTGTGAAGTTG 2337 Query 2338 GTTACTATCTGTTCAAGTTCTGATTTTGAAGGAAATGATTTTAGAGCTCTAGTGTATGAG 2397 |||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||| Sbjct 2338 GTTACTGTCTGTTCAAGTGCTGATTTTGAAGGAAATGATTTTAGAGCTCTAGTTTATGAG 2397 Query 2398 TTCATGCCTAATGGAAACTTGGACATGTGGCTGCACCCGGATGAAATAGAAGAAACTGGC 2457 |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 2398 TTCATGTCTAATGGAAACTTGGACATGTGGTTGCACCCGGATGAAATAGAAGAAACTGGC 2457 Query 2458 AATCCCTCGAG-AACCCTGGGCCTTT-TTGCGAGACTCAACATTGCCATAGATGTTGCTT 2515 |||||||| || ||||||| || || ||| |||||||||||||| ||||||||||||| Sbjct 2458 AATCCCTC-AGGAACCCTGA-CCGTTGTTGAAAGACTCAACATTGCGATAGATGTTGCTT 2515 Query 2516 CGGCTCTGGTTTATCTTCATACTTATTGTCACAACCCTATAGCCCACTGTGATATTAAGC 2575 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2516 CGGCTTTGGTTTATCTTCATACTTATTGTCACAACCCTATAGCCCACTGTGATATTAAGC 2575 Query 2576 CAAGCAATATTCTACTAGACAAAGATTTGACTGCTCATGTAAGCGACTTTGGTTTGGCAC 2635 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 2576 CAAGCAATATTCTACTTGACAAAGATTTGACTGCTCATGTAAGCGACTTTGGTTTGGCAC 2635 Query 2636 AACTCCTACTAAAATTTGATCGGGATACATTCCATATTCAATTCAGCTCTGCAGGTGTTC 2695 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2636 AACTCCTACTAAAATTTGATCGGGATACATTCCATATTCAATTCAGCTCTGCAGGTGTTC 2695 Query 2696 GTGGAACCATTGGCTATGCTGCACCAGAATATGGTATGGGAGGTCATCCATCAATTATGG 2755 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 2696 GTGGAACCATTGGATATGCTGCACCAGAATATGGTATGGGAGGTCATCCATCAATAATGG 2755 Query 2756 GAGACGTGTACAGTTTTGGTATTGTCCTATTGGAGATTTTCACTGGAAAAAGACCCACCA 2815 | ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 2756 GCGACGTGTACAGCTTTGGTATCCTCCTATTGGAGATTTTCACTGGAAAAAGACCCACCG 2815 Query 2816 ATAAGTTATTCGTGGACGGTTTAACTCTACATAGTTTTACTAAATCAGCATTGCAGAAAC 2875 |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| Sbjct 2816 ATAAGTTATTCGTGGACGGTTTAACTCTCCATAGTTTTACTAAATCAGCATTGCCGAAAC 2875 Query 2876 GACAAGCACTAGATATCACAGACGAAA-CTATTCTCCGTGGTGCATATGCTCAGCATTTC 2934 ||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||| Sbjct 2876 GACAAGCACTAGATATCACAGAC-AAATCTATTCTCCGTGGTGCATACGCTCAGCATTTC 2934 Query 2935 AATATGGTCGAATGCTTGACCCTTGTGTTTCGGGTGGGAGTCAGTTGTTCAGAAGAATCA 2994 ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| Sbjct 2935 AATATGGTCGAATGCTTGACCCTTGTGTTTCAGGTTGGAGTCAGTTGTTCAGAAGAATCA 2994 Query 2995 CCGGTAAACCGGATATCAATGGCTGAGGCTATAAGCAAGCTGGTCTCTATCAGAGAAAGT 3054 ||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||| ||| Sbjct 2995 CCGGTGAACCGGATATCAATGGCCGAGGCTGTAAGCAAGCTGGTCTCTATCAGAGAGAGT 3054 Query 3055 TTTTT-CAGAGA 3065 ||||| | |||| Sbjct 3055 TTTTTTCGGAGA 3066 > Ahg488953 jgi|Araly1|488953|fgenesh2_kg.6__2087__AT5G20480.1 Length=3299 Score = 399 bits (216), Expect = 5e-110 Identities = 1331/1848 (72%), Gaps = 162/1848 (9%) Strand=Plus/Plus Query 130 TTGCTTGAGTTCAAGTCTCAAGTTTCTGAAA-CAAGTAGAGTTGTGTTGGGCTCGTGGAA 188 ||||||||||||||||||||||||||||||| |||| |||| || |||| ||| ||||| Sbjct 126 TTGCTTGAGTTCAAGTCTCAAGTTTCTGAAAACAAG-AGAGAGGTCTTGGCCTCATGGAA 184 Query 189 TGACTCCCTGCCTC-TC-TGTAGCTGGACCGGTGTTA-AGTGTGGCCTCAAACACAGGA- 244 | ||||| | || | | || | |||| || || | | ||||||| || || || | Sbjct 185 TCACTCC-TCCC-CATTATGCAATTGGATTGGAGTCATA-TGTGGCCGCAGGCA-AGAAA 240 Query 245 GAGTAACTG-GTGTGGATCTTGGAGGACTAAAACTAACCGGTGT-AGTCTCTCCCTTTGT 302 |||| | | || || | || |||||| | || |||||||||| | |||| |||| | Sbjct 241 GAGTTA-TAAGTCTGAACCTCGGAGGATTCAAGTTAACCGGTGTGA-TCTCACCCTCCAT 298 Query 303 TGGTAACCTCTCATTTCTTAGATCT-TTGAATCTTGCAGACAACT-TTTTCCATGGTGCC 360 |||||| ||||| ||||| || | | || ||||||| |||||||| |||| | | | || Sbjct 299 TGGTAATCTCTCCTTTCTCAGGTTTCTT-AATCTTGGAGACAACTCTTTTGGAAG-TACC 356 Query 361 ATCCCTTCA-GAGGTTGGAAA-CT-TGTTCAGGCTTCAATATTTGAACATGAGCAATAAT 417 |||||| || ||||| |||| || | || |||||||| || |||||||||||| ||||| Sbjct 357 ATCCCT-CAAGAGGTGGGAATGCTAT-TT-AGGCTTCAGTACTTGAACATGAGCTATAAT 413 Query 418 TTATTTGGAGGGGTG-ATTCCGGTT-GTTCTGTCGAACTGCTCTAGCCTGTCAACACTTG 475 | | | | || | |||||| | || || || || |||||||| ||||| || ||| Sbjct 414 CT-TCTCCAAGGAAGGATTCCGCCTAGT-CTTTCTAATTGCTCTAGACTGTCGACTGTTG 471 Query 476 ATTTATCATCAAATCATCTTGAACAAGGCGTGCCTTTGGAGTTTGGTTCGCTGTCTAAGC 535 ||||||| ||||| || |||| ||| ||||| |||| || | ||||| || ||||||| Sbjct 472 ATTTATCGTCAAACCAGCTTGGACATGGCGTTCCTTCAGAACTAGGTTCACTTTCTAAGC 531 Query 536 TTGTCC-TTCTCTCTCTTGGTAGAAACAATCTAACAGGGAAGTTTCCTGCCTCATTGGGA 594 | | || |||| |||| ||| |||||| || ||||| || |||||||| || || ||| Sbjct 532 TGG-CCATTCTGGATCTTAGTAAAAACAACCTTACAGGAAATTTTCCTGCATCTTTTGGA 590 Query 595 AACCTGACATCACTCCAGATGCTCGATTTTATATATAACCAAATAGAAGGAGAGATCCCT 654 ||| |||| |||||||||| ||| || ||| ||||||||| || | ||| ||||| || Sbjct 591 AACTTGACGTCACTCCAGAAGCTTGACTTTGCATATAACCAGATGGGAGGTGAGATTCCA 650 Query 655 GGGGATA-TAGCCAGACTGAAACAGATGATCTTTTTCCGAATAGCATTAAACAAGTTTA- 712 | || | |||| ||| ||| || ||| | ||||| | ||||||| | || | |||| Sbjct 651 GACGA-AGTAGCTAGATTGACTCATATGGTGTTTTTTCAAATAGCACTGAATA-GTTTTT 708 Query 713 -ATGG-GGTTTTCCCTCCTCCAATT-TACAACCTGTCTTCACTA-A-TATTCCTGTC-CA 766 | || |||||||| |||| || || |||||| | || || || | | ||| | || | Sbjct 709 CA-GGTGGTTTTCC-TCCTGCA-TTGTACAACATCTCCTCTCTTGAGT-TTC-TATCTC- 762 Query 767 TTACCGG-CAACAG-TTTCTCTGGCACCCTTAGACCTGACTTTGGTTCTCTTCTCCCTAA 824 | | | | ||| || ||| || || | |||||| |||| |||||| |||||| || || Sbjct 763 T-AGCTGACAATAGCTTT-TCGGGTAACCTTAGGGCTGATTTTGGTGATCTTCTACC-AA 819 Query 825 C-CTTCAA-ATA-CTATATATGGGGAT-AAAT-AGTTTCACGGGTACC-ATTCC-AGAGA 877 || || || || | | | ||||| |||| |||| ||| || | | ||||| | | | Sbjct 820 GTCT--AAGATGGCT-TCTTTTGGGATCAAATCAGTT-CACTGG-AGCTATTCCCATA-A 873 Query 878 CACTTTCCAATATCTCAAGTCTTCGACAAC-TT-GATAT-TCCGTCTAACCATCTTACTG 934 ||||| ||||||||||||| ||| || | || ||||| || ||||| | || |||| Sbjct 874 CACTTGCCAATATCTCAAGCCTT-GA-ATGGTTTGATATCTCA-TCTAATTACCTGACTG 930 Query 935 GAAAG-ATACCATTGAG-TTTCGGAAGACTT-CAG-AATCTATTACTGCT-AGGCCTTAA 989 ||| | || || ||||| ||| |||| | || | | ||||| | || | ||| || Sbjct 931 GAA-GTATCCCTTTGAGCTTT-GGAA-AGTTAC-GTAATCTGTGG-TGGTTAGGAATTCG 985 Query 990 TAATAACTCTCTGGGAAACTA-CTCTTCTGGTGATCTTGATTTTCTTGGTGCACTGACTA 1048 |||||||||||| ||| | || ||| || ||| |||||| ||| ||||||| || | | Sbjct 986 TAATAACTCTCTTGGATA-TAACTCGTCCAGTGGTCTTGAATTTATTGGTGCTTTGGCGA 1044 Query 1049 ACTGCAGTCAGTT-GCAGTATTT-GAATGTTGGCTT-CAACAAACTCGGCGGTCAGTTGC 1105 |||||| ||| || | |||| || || |||||| || ||| | ||| || ||| || ||| Sbjct 1045 ACTGCACTCAATTAG-AGTACTTAGA-TGTTGG-TTACAATAGACTTGGAGGTGAGCTGC 1101 Query 1106 CTGTCTTTATAGCCAATCTCTCCACCCAATTAACTGAGCTCTCT-C-TTGGTGGAAATCT 1163 ||| || || |||||||| ||||| |||| ||| || ||| | | |||| |||||| Sbjct 1102 CTGCCTCCATGGCCAATCTGTCCACTAAATTGACT-AG-TCTGTTCCTTGGACAAAATCT 1159 Query 1164 CATCTCTGGAAGTATTCCTCATGGCATAGGGAATCTTGTAAGCCTGCAA-ACATT-AGAC 1221 |||||||||| |||||| | | ||| ||||||||| ||||||||||| | | | || Sbjct 1160 TATCTCTGGAACCATTCCTTACGACATCGGGAATCTTATAAGCCTGCAAGA-ACTCAGT- 1217 Query 1222 TTGGGCGA-AAATCTGTTGACAGGCA-AACTTCCTCCCTCATTGGGAGAA-CTTTCTGAA 1278 |||| | |||| |||| | || | ||||||| ||| || || ||| |||| |||| Sbjct 1218 TTGGAA-ACAAATAAGTTGTCTGG-AGAACTTCCAGTCTCTTTCGG-GAAGCTTT-TGAA 1273 Query 1279 TT-G-AGAAAAGTCT-TGCTCTATTCAAATGGACTGTCTGGAGAGATACCATCTTCCTTG 1335 || | || || | ||||||||||||| | | || || || |||||||||| || Sbjct 1274 TTTGCAGGTG-GTGGAT-CTCTATTCAAATGCAATATCGGGGGAAATACCATCTTATTTT 1331 Query 1336 GGGAATATCAGTGGGCTAACATAC-CTGTATCTGCTTAACAACAGTTTTGAAGGAAGCAT 1394 || || || | | || | || | || || || || ||| ||||| | ||||| || Sbjct 1332 GGCAACATGACTCGGTTG-CAGAAGCTCCATTTGAATAGCAATAGTTTCCACGGAAGAAT 1390 Query 1395 CCCTTCA-AGTCTTGGAAGTTG-CAGCTACCTT-CTAGAC-T-TGAACCTCGGTACTAAT 1449 |||| || ||||||||| |||| || ||| || |||||| | || | | | ||| ||| Sbjct 1391 CCCT-CAGAGTCTTGGACGTTGTCAA-TAC-TTGCTAGACCTGTGGAT-T-GATACAAAT 1445 Query 1450 AAGTTGAATGGCAGC-ATACCCCATGAGCTTA-TGGAACTTCCATCTCTTGTCGT-CTTA 1506 | ||||||||| | | ||||| | || | | || || |||| || || | | | | || Sbjct 1446 AGGTTGAATGGGA-CTATACCTCGGGAAAT-ACTGCAAATTCCGTCCCTCG-CTTACATA 1502 Query 1507 AATGTCTCATTTAATTTGTTGGTTGGCCCTTTGAGACAAGACA-TTGGAAAGCTTA-AAT 1564 || | ||| ||||| ||| |||| ||| | |||| | |||||||| || || Sbjct 1503 GATTTGTCAAACAATTTCTTGACCGGCCATTTTCCAGAAGA-AGTTGGAAAG-TTGGAAC 1560 Query 1565 TTCTA-TTAGCTCTAGACGTTTCATACAATAAACTATCAGGACAGATTCCACAAACCT-T 1622 |||| || | |||| | ||| ||||| ||| ||||||||||||| |||||| | | | Sbjct 1561 TTCTTGTTGGA-CTAGGTGCTTCGTACAACAAATTATCAGGACAGATCCCACAAGC-TAT 1618 Query 1623 -GGCGAATTGTCTCTC-ACTAGAATTCCTTT-TGCTGCAAGGGAATTCATTTGTTGG-GC 1678 || | ||||||||| | | ||||| |||| | ||||||| ||||| |||| || || Sbjct 1619 AGGGGG-TTGTCTCTCGA-TGGAATTTCTTTATA-TGCAAGGAAATTCGTTTGACGGAGC 1675 Query 1679 CCATTCCAGATATAAGAGGGTTGACTG-GCCTCA-GATTCCTAGATCTG-TCGAAGAATA 1735 | |||||||||||||| ||||| | |||| | || | | || || || || || | Sbjct 1676 C-ATTCCAGATATAAGTCGGTTGG-TAAGCCTAACGAATGTT-GA-CTTCTCCAACAACA 1731 Query 1736 ATCTCTCTGGTACA-ATACCT-GAATATATGGCGAACTTTTCCAAACT-GCAGAAC-CTG 1791 |||||||||| | |||||| || ||| |||| || | | || | || ||| ||| Sbjct 1732 ATCTCTCTGGC-CGGATACCTCGA-TATCTGGCCAA-TCTACCTTTGTTGC-GAAATCTG 1787 Query 1792 AATCTCTCTTTGAACAACTTCGACGGA-GCTGTGCCAACGGA-AGGGGTATTTCGTAATA 1849 ||||| ||| ||||||| || || ||| || |||||||| | ||| || || || ||| Sbjct 1788 AATCTTTCTATGAACAATTTTGAGGGAAGC-GTGCCAACA-ACAGGAGTGTTCCGAAATG 1845 Query 1850 CCAGTGC-GATGTCGGTCTTTGGTAACATAAACCTCTGTGGAGGCATC 1896 | | || | | || || |||||||||| ||| | || ||||||||| Sbjct 1846 CTACAGCAGTT-TCTGTTTTTGGTAACAAAAATATATGCGGAGGCATC 1892 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 116251427740 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5