BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G47120.1 Length=1305 Score E Sequences producing significant alignments: (Bits) Value Ahg937456 jgi|Araly1|937456|scaffold_501647.1 902 0.0 Ahg358097 jgi|Araly1|358097|fgenesh1_pg.C_scaffold_8001884 398 7e-110 > Ahg937456 jgi|Araly1|937456|scaffold_501647.1 Length=991 Score = 902 bits (488), Expect = 0.0 Identities = 533/555 (96%), Gaps = 2/555 (0%) Strand=Plus/Plus Query 34 ACGCAGAGAAATTTGAAAAGATGAATCCATTGACGCAGGTGAAGAATCTACAGAAGATAA 93 ||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||| Sbjct 1 ACGAAGAGAAATTTGAAAGGATGAATCCATTGACGCAGGTGAAGAATTTACAGAAGATAA 60 Query 94 ACGCTAGGGAATCAGATTTAGGAATATCTGATGAAGCTTCATGGCACGCTAAGTACAAAA 153 ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| Sbjct 61 ACGCTAGGGAATCAGATTTAGGAATTTCTGAAGAAGCTTCATGGCACGCTAAGTACAAAA 120 Query 154 ACTCTGCATATGTCTACGTCGGAGGCATACCGTTCGATCTCACCGAAGGTGATCTTCTCG 213 ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||| Sbjct 121 ACTCTGCCTATGTCTACGTCGGATGCATACCGTTCGATCTCACCGAAGGTGATCTCCTCG 180 Query 214 CCGTCTTCTCTCAATATGGTGAAATTGTTGATGTCAATCTTATTCGAGACAAGGGAACGG 273 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 181 CCGTCTTCTCACAATATGGTGAAATTGTTGATGTCAATCTTATTCGAGACAAGGGAACTG 240 Query 274 GTAAATCTAAAGGTTTTGCTTTTCTTGCTTATGAAGATCAGAGAAGTACCATTCTTGCTG 333 ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| Sbjct 241 GTAAATCTAAAGGTTTTGCATTTCTTGCTTATGAAGATCAGAGAAGTACCGTTCTTGCTG 300 Query 334 TTGATAATCTGAATGGAGCTCTTGTGTTGGGACGGACCATTAAGGTGGACCATTGTGGGG 393 ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||| Sbjct 301 TTGATAATCTGAATGGAGCTCTTGTGTTGGGGCGGACTATTAAGGTGGACCATTGTAGGG 360 Query 394 CATACAAAAAGCACGAAGAGGAGGATGAAGAGACGCGAC-GCCAGAATAGAGAGGCTCGT 452 |||||||||||| ||||| ||||||||||||||||||| | |||||||||||||||||| Sbjct 361 AATACAAAAAGCATGAAGAAGAGGATGAAGAGACGCGACAG-CAGAATAGAGAGGCTCGT 419 Query 453 GGTGTATGCAGAGCTTTTCAGAGAGGAGAGTGTACTCGTGGTGATTCTTGCAAATTTTCC 512 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 GGTGTATGCAGAGCGTTTCAGAGAGGAGAGTGTACTCGTGGTGATTCTTGCAAATTTTCC 479 Query 513 CACGATGAAAAAAGAGCTGCAAATACTGGTTGGGGTCATGAAGAGGATAGAAGTTCCAAG 572 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 480 CACGATGAAAAAAGAGCTGCAAATACTGGTTGGGGTCATGAAGAGGATAGAAGTTCCAGG 539 Query 573 TGGGATCATGACAAG 587 ||||||||||||||| Sbjct 540 TGGGATCATGACAAG 554 Score = 671 bits (363), Expect = 0.0 Identities = 454/497 (91%), Gaps = 10/497 (2%) Strand=Plus/Plus Query 586 AGAATAGAGAGGGTCGTGGTGTTTGCAGAGCTTTTCAGAGAGGAGAGTGTACTCGTGGTG 645 |||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct 403 AGAATAGAGAGGCTCGTGGTGTATGCAGAGCGTTTCAGAGAGGAGAGTGTACTCGTGGTG 462 Query 646 ATTCTTGTAAATTTTCACATGATGAAAAAAGAGCTGCAACTACTGGTTGGGGTCATGAAG 705 ||||||| |||||||| || ||||||||||||||||||| |||||||||||||||||||| Sbjct 463 ATTCTTGCAAATTTTCCCACGATGAAAAAAGAGCTGCAAATACTGGTTGGGGTCATGAAG 522 Query 706 AGGATAGAAGTTCCAAGTGGGATCAAGACAAGTTAAATGGTGCTAAAAAGGGTGGTACAA 765 ||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||| Sbjct 523 AGGATAGAAGTTCCAGGTGGGATCATGACAAGTTTAATGGTGCTAAAAAGGGTGGTACAA 582 Query 766 GTTTTGGCAATCGAGGAGATTTCAAACCTGATGTGGAAGAGAAAAGTTACAGAGGAAGGG 825 |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| || Sbjct 583 GTTTTGGCCATCGAGGAGATTTCAAACCTGATGCGGAAGAGAAAAGTTACAGAGGAAAGG 642 Query 826 GTGATGGAGATGCCTCGTATGGCCGCCCTAAAGAGAGAGAAAGAGTGGATAGGGAGGATA 885 ||||||||| ||||| ||||||||| |||||||| |||||||||||||| |||||||||| Sbjct 643 GTGATGGAGTTGCCTGGTATGGCCGTCCTAAAGAAAGAGAAAGAGTGGAAAGGGAGGATA 702 Query 886 TGGGGCCAAGGTCAAGAGATGCTTATGATATGAAGGAACAAAAGAGATCAGGACGGTATG 945 |||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||| Sbjct 703 TGGGGCTAAGGTCAAGAGATGCTTATGATATGAGGGAACAAAAGAGAACAGGACGGTATG 762 Query 946 ATAAT--GCGTATTCTAGAAGGCACAATGATG-AAATT-G-AT--T-ATGTAAGGGAGGA 997 || || ||| || ||||||| ||||||| || |||| | || | || |||||||||| Sbjct 763 ATGATTCGCG-AT-CTAGAAGTCACAATGCTGGAAATGAGTATAATTATATAAGGGAGGA 820 Query 998 CAAGGGATCCAGAGCACAAGATTGGGAGAAAAGGAAGGCAGAATCTAGAAGAGATCGTAA 1057 ||||||||||||| ||| |||||||||||| ||||||||||||||||||||||| ||| Sbjct 821 CAAGGGATCCAGAACACGTGATTGGGAGAAATTGAAGGCAGAATCTAGAAGAGATCATAA 880 Query 1058 CGACAGGGAGGAAAAAG 1074 ||||||||||| ||||| Sbjct 881 CGACAGGGAGGGAAAAG 897 > Ahg358097 jgi|Araly1|358097|fgenesh1_pg.C_scaffold_8001884 Length=522 Score = 398 bits (215), Expect = 7e-110 Identities = 431/533 (81%), Gaps = 24/533 (5%) Strand=Plus/Plus Query 54 ATGAATCCATTGACGCA-GGTGAAGAA-TCTACAGAAG-ATAAACGCTAGGGAATCAGAT 110 |||||||| ||||| | ||||||||| | |||| || || ||||| | |||| |||| Sbjct 1 ATGAATCCGTTGAC-AATGGTGAAGAAGAC-ACAG-AGAATTAACGCGAAAGAATTAGAT 57 Query 111 TTAGGAATATCTGATGAAGCTTCATGGCACGCTAAGTACAAAAACTCTGCATATGTCTAC 170 |||| || || || ||||| || ||||||||||| |||||| | || || || || ||| Sbjct 58 CTAGGGATCTCCGACGAAGCATCTTGGCACGCTAAATACAAAGATTCAGCCTACGTTTAC 117 Query 171 GTCGGAGGCA-TACCGTTCGATCTCACCGAAGGTGATCTTCTCGCCGTCTTCTCTCAATA 229 |||||| | | ||| || |||| | || || ||||| || |||||||| ||| | ||||| Sbjct 118 GTCGGA-GAATTACTGTACGATTTAACGGAGGGTGACCTCCTCGCCGTTTTCGCACAATA 176 Query 230 TGGTGAAATTGTTGATGTCAATCTTATTCGAGACAAGGGAAC-GGGTAAATCTAAAGGTT 288 ||||||| |||||||||| |||||| |||||| || ||||| ||| ||||| ||||| | Sbjct 177 TGGTGAAGTTGTTGATGTGAATCTTGCTCGAGATAAAGGAACTGGG-AAATCAAAAGGAT 235 Query 289 TTGCTTTTCTTGCTTATGAAGATCAGAGAAGTACCATTCTTGCTGTTGATAATCTGAATG 348 |||| ||| ||||||||||||||||||||||||| | ||||||||||||||||||||||| Sbjct 236 TTGCGTTTGTTGCTTATGAAGATCAGAGAAGTACAAATCTTGCTGTTGATAATCTGAATG 295 Query 349 GAGCTCTTGTGTTGGGACGGACCATTAAGGTGGACCATTGTGGGGCATACA-AAA-AGCA 406 ||||| || |||||| | | ||| || ||||| |||||||| |||| ||| || | Sbjct 296 GAGCTAAGGTTTTGGGAAGAATCATAAAAGTGGAGCATTGTGGTAAATACTCAAAGAG-A 354 Query 407 CGAAGAGGAGGATGAAGAGACGCGACGCC-A-GAATAGAGAGGCTCGTGGTGTATGCAGA 464 |||||||| |||||||||||| | || | ||| ||||| ||||||||||| |||||| Sbjct 355 -GAAGAGGATGATGAAGAGACGA-A-GCATAAGAAGAGAGAAGCTCGTGGTGTTTGCAGA 411 Query 465 GCTTTTCAGAGA--GGAGAGTGTACTCGTGGTGATTCTTGCAAATTTTCCCACGATGAAA 522 |||||||||||| ||| | ||||||||||| ||| |||||||||||| |||||||||| Sbjct 412 GCTTTTCAGAGAAAGGA-A-TGTACTCGTGGAGATGGTTGCAAATTTTCTCACGATGAAA 469 Query 523 AAAGAGCTGCAAATACTGGTTGGGGTCATGAAGAG-GATAGAAGTTCCAAGTG 574 | |||| ||| ||||| || |||||||| ||||| | ||||||||||| ||| Sbjct 470 ACAGAGGTGCCAATACCGGCTGGGGTCACGAAGACCG-TAGAAGTTCCAGGTG 521 Score = 126 bits (68), Expect = 4e-28 Identities = 120/144 (83%), Gaps = 8/144 (6%) Strand=Plus/Plus Query 585 AAGAATAGAGAGGGTCGTGGTGTTTGCAGAGCTTTTCAGAGA--GGAGAGTGTACTCGTG 642 ||||| ||||| | |||||||||||||||||||||||||||| ||| | |||||||||| Sbjct 382 AAGAAGAGAGAAGCTCGTGGTGTTTGCAGAGCTTTTCAGAGAAAGGA-A-TGTACTCGTG 439 Query 643 GTGATTCTTGTAAATTTTCACATGATGAAAAAAGAGCTGC-AACTACTGGTTGGGGTCAT 701 | ||| ||| |||||||| || |||||||| |||| ||| || ||| || |||||||| Sbjct 440 GAGATGGTTGCAAATTTTCTCACGATGAAAACAGAGGTGCCAA-TACCGGCTGGGGTCAC 498 Query 702 GAAGAG-GATAGAAGTTCCAAGTG 724 ||||| | ||||||||||| ||| Sbjct 499 GAAGACCG-TAGAAGTTCCAGGTG 521 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48797333760 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5