BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G47120.1
Length=1305
Score E
Sequences producing significant alignments: (Bits) Value
Ahg937456 jgi|Araly1|937456|scaffold_501647.1 902 0.0
Ahg358097 jgi|Araly1|358097|fgenesh1_pg.C_scaffold_8001884 398 7e-110
> Ahg937456 jgi|Araly1|937456|scaffold_501647.1
Length=991
Score = 902 bits (488), Expect = 0.0
Identities = 533/555 (96%), Gaps = 2/555 (0%)
Strand=Plus/Plus
Query 34 ACGCAGAGAAATTTGAAAAGATGAATCCATTGACGCAGGTGAAGAATCTACAGAAGATAA 93
||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ACGAAGAGAAATTTGAAAGGATGAATCCATTGACGCAGGTGAAGAATTTACAGAAGATAA 60
Query 94 ACGCTAGGGAATCAGATTTAGGAATATCTGATGAAGCTTCATGGCACGCTAAGTACAAAA 153
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 61 ACGCTAGGGAATCAGATTTAGGAATTTCTGAAGAAGCTTCATGGCACGCTAAGTACAAAA 120
Query 154 ACTCTGCATATGTCTACGTCGGAGGCATACCGTTCGATCTCACCGAAGGTGATCTTCTCG 213
||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 121 ACTCTGCCTATGTCTACGTCGGATGCATACCGTTCGATCTCACCGAAGGTGATCTCCTCG 180
Query 214 CCGTCTTCTCTCAATATGGTGAAATTGTTGATGTCAATCTTATTCGAGACAAGGGAACGG 273
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 181 CCGTCTTCTCACAATATGGTGAAATTGTTGATGTCAATCTTATTCGAGACAAGGGAACTG 240
Query 274 GTAAATCTAAAGGTTTTGCTTTTCTTGCTTATGAAGATCAGAGAAGTACCATTCTTGCTG 333
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 241 GTAAATCTAAAGGTTTTGCATTTCTTGCTTATGAAGATCAGAGAAGTACCGTTCTTGCTG 300
Query 334 TTGATAATCTGAATGGAGCTCTTGTGTTGGGACGGACCATTAAGGTGGACCATTGTGGGG 393
||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||
Sbjct 301 TTGATAATCTGAATGGAGCTCTTGTGTTGGGGCGGACTATTAAGGTGGACCATTGTAGGG 360
Query 394 CATACAAAAAGCACGAAGAGGAGGATGAAGAGACGCGAC-GCCAGAATAGAGAGGCTCGT 452
|||||||||||| ||||| ||||||||||||||||||| | ||||||||||||||||||
Sbjct 361 AATACAAAAAGCATGAAGAAGAGGATGAAGAGACGCGACAG-CAGAATAGAGAGGCTCGT 419
Query 453 GGTGTATGCAGAGCTTTTCAGAGAGGAGAGTGTACTCGTGGTGATTCTTGCAAATTTTCC 512
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GGTGTATGCAGAGCGTTTCAGAGAGGAGAGTGTACTCGTGGTGATTCTTGCAAATTTTCC 479
Query 513 CACGATGAAAAAAGAGCTGCAAATACTGGTTGGGGTCATGAAGAGGATAGAAGTTCCAAG 572
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 480 CACGATGAAAAAAGAGCTGCAAATACTGGTTGGGGTCATGAAGAGGATAGAAGTTCCAGG 539
Query 573 TGGGATCATGACAAG 587
|||||||||||||||
Sbjct 540 TGGGATCATGACAAG 554
Score = 671 bits (363), Expect = 0.0
Identities = 454/497 (91%), Gaps = 10/497 (2%)
Strand=Plus/Plus
Query 586 AGAATAGAGAGGGTCGTGGTGTTTGCAGAGCTTTTCAGAGAGGAGAGTGTACTCGTGGTG 645
|||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 403 AGAATAGAGAGGCTCGTGGTGTATGCAGAGCGTTTCAGAGAGGAGAGTGTACTCGTGGTG 462
Query 646 ATTCTTGTAAATTTTCACATGATGAAAAAAGAGCTGCAACTACTGGTTGGGGTCATGAAG 705
||||||| |||||||| || ||||||||||||||||||| ||||||||||||||||||||
Sbjct 463 ATTCTTGCAAATTTTCCCACGATGAAAAAAGAGCTGCAAATACTGGTTGGGGTCATGAAG 522
Query 706 AGGATAGAAGTTCCAAGTGGGATCAAGACAAGTTAAATGGTGCTAAAAAGGGTGGTACAA 765
||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 523 AGGATAGAAGTTCCAGGTGGGATCATGACAAGTTTAATGGTGCTAAAAAGGGTGGTACAA 582
Query 766 GTTTTGGCAATCGAGGAGATTTCAAACCTGATGTGGAAGAGAAAAGTTACAGAGGAAGGG 825
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 583 GTTTTGGCCATCGAGGAGATTTCAAACCTGATGCGGAAGAGAAAAGTTACAGAGGAAAGG 642
Query 826 GTGATGGAGATGCCTCGTATGGCCGCCCTAAAGAGAGAGAAAGAGTGGATAGGGAGGATA 885
||||||||| ||||| ||||||||| |||||||| |||||||||||||| ||||||||||
Sbjct 643 GTGATGGAGTTGCCTGGTATGGCCGTCCTAAAGAAAGAGAAAGAGTGGAAAGGGAGGATA 702
Query 886 TGGGGCCAAGGTCAAGAGATGCTTATGATATGAAGGAACAAAAGAGATCAGGACGGTATG 945
|||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 703 TGGGGCTAAGGTCAAGAGATGCTTATGATATGAGGGAACAAAAGAGAACAGGACGGTATG 762
Query 946 ATAAT--GCGTATTCTAGAAGGCACAATGATG-AAATT-G-AT--T-ATGTAAGGGAGGA 997
|| || ||| || ||||||| ||||||| || |||| | || | || ||||||||||
Sbjct 763 ATGATTCGCG-AT-CTAGAAGTCACAATGCTGGAAATGAGTATAATTATATAAGGGAGGA 820
Query 998 CAAGGGATCCAGAGCACAAGATTGGGAGAAAAGGAAGGCAGAATCTAGAAGAGATCGTAA 1057
||||||||||||| ||| |||||||||||| ||||||||||||||||||||||| |||
Sbjct 821 CAAGGGATCCAGAACACGTGATTGGGAGAAATTGAAGGCAGAATCTAGAAGAGATCATAA 880
Query 1058 CGACAGGGAGGAAAAAG 1074
||||||||||| |||||
Sbjct 881 CGACAGGGAGGGAAAAG 897
> Ahg358097 jgi|Araly1|358097|fgenesh1_pg.C_scaffold_8001884
Length=522
Score = 398 bits (215), Expect = 7e-110
Identities = 431/533 (81%), Gaps = 24/533 (5%)
Strand=Plus/Plus
Query 54 ATGAATCCATTGACGCA-GGTGAAGAA-TCTACAGAAG-ATAAACGCTAGGGAATCAGAT 110
|||||||| ||||| | ||||||||| | |||| || || ||||| | |||| ||||
Sbjct 1 ATGAATCCGTTGAC-AATGGTGAAGAAGAC-ACAG-AGAATTAACGCGAAAGAATTAGAT 57
Query 111 TTAGGAATATCTGATGAAGCTTCATGGCACGCTAAGTACAAAAACTCTGCATATGTCTAC 170
|||| || || || ||||| || ||||||||||| |||||| | || || || || |||
Sbjct 58 CTAGGGATCTCCGACGAAGCATCTTGGCACGCTAAATACAAAGATTCAGCCTACGTTTAC 117
Query 171 GTCGGAGGCA-TACCGTTCGATCTCACCGAAGGTGATCTTCTCGCCGTCTTCTCTCAATA 229
|||||| | | ||| || |||| | || || ||||| || |||||||| ||| | |||||
Sbjct 118 GTCGGA-GAATTACTGTACGATTTAACGGAGGGTGACCTCCTCGCCGTTTTCGCACAATA 176
Query 230 TGGTGAAATTGTTGATGTCAATCTTATTCGAGACAAGGGAAC-GGGTAAATCTAAAGGTT 288
||||||| |||||||||| |||||| |||||| || ||||| ||| ||||| ||||| |
Sbjct 177 TGGTGAAGTTGTTGATGTGAATCTTGCTCGAGATAAAGGAACTGGG-AAATCAAAAGGAT 235
Query 289 TTGCTTTTCTTGCTTATGAAGATCAGAGAAGTACCATTCTTGCTGTTGATAATCTGAATG 348
|||| ||| ||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 236 TTGCGTTTGTTGCTTATGAAGATCAGAGAAGTACAAATCTTGCTGTTGATAATCTGAATG 295
Query 349 GAGCTCTTGTGTTGGGACGGACCATTAAGGTGGACCATTGTGGGGCATACA-AAA-AGCA 406
||||| || |||||| | | ||| || ||||| |||||||| |||| ||| || |
Sbjct 296 GAGCTAAGGTTTTGGGAAGAATCATAAAAGTGGAGCATTGTGGTAAATACTCAAAGAG-A 354
Query 407 CGAAGAGGAGGATGAAGAGACGCGACGCC-A-GAATAGAGAGGCTCGTGGTGTATGCAGA 464
|||||||| |||||||||||| | || | ||| ||||| ||||||||||| ||||||
Sbjct 355 -GAAGAGGATGATGAAGAGACGA-A-GCATAAGAAGAGAGAAGCTCGTGGTGTTTGCAGA 411
Query 465 GCTTTTCAGAGA--GGAGAGTGTACTCGTGGTGATTCTTGCAAATTTTCCCACGATGAAA 522
|||||||||||| ||| | ||||||||||| ||| |||||||||||| ||||||||||
Sbjct 412 GCTTTTCAGAGAAAGGA-A-TGTACTCGTGGAGATGGTTGCAAATTTTCTCACGATGAAA 469
Query 523 AAAGAGCTGCAAATACTGGTTGGGGTCATGAAGAG-GATAGAAGTTCCAAGTG 574
| |||| ||| ||||| || |||||||| ||||| | ||||||||||| |||
Sbjct 470 ACAGAGGTGCCAATACCGGCTGGGGTCACGAAGACCG-TAGAAGTTCCAGGTG 521
Score = 126 bits (68), Expect = 4e-28
Identities = 120/144 (83%), Gaps = 8/144 (6%)
Strand=Plus/Plus
Query 585 AAGAATAGAGAGGGTCGTGGTGTTTGCAGAGCTTTTCAGAGA--GGAGAGTGTACTCGTG 642
||||| ||||| | |||||||||||||||||||||||||||| ||| | ||||||||||
Sbjct 382 AAGAAGAGAGAAGCTCGTGGTGTTTGCAGAGCTTTTCAGAGAAAGGA-A-TGTACTCGTG 439
Query 643 GTGATTCTTGTAAATTTTCACATGATGAAAAAAGAGCTGC-AACTACTGGTTGGGGTCAT 701
| ||| ||| |||||||| || |||||||| |||| ||| || ||| || ||||||||
Sbjct 440 GAGATGGTTGCAAATTTTCTCACGATGAAAACAGAGGTGCCAA-TACCGGCTGGGGTCAC 498
Query 702 GAAGAG-GATAGAAGTTCCAAGTG 724
||||| | ||||||||||| |||
Sbjct 499 GAAGACCG-TAGAAGTTCCAGGTG 521
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48797333760
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5