BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G47130.1 Length=1083 Score E Sequences producing significant alignments: (Bits) Value Ahg485089 jgi|Araly1|485089|fgenesh2_kg.5__1081__AT3G47130.1 1312 0.0 Ahg937413 jgi|Araly1|937413|scaffold_501604.1 399 2e-110 Ahg323341 jgi|Araly1|323341|fgenesh1_pm.C_scaffold_5000885 335 4e-91 Ahg937412 jgi|Araly1|937412|scaffold_501603.1 126 3e-28 > Ahg485089 jgi|Araly1|485089|fgenesh2_kg.5__1081__AT3G47130.1 Length=984 Score = 1312 bits (710), Expect = 0.0 Identities = 878/956 (92%), Gaps = 23/956 (2%) Strand=Plus/Plus Query 105 CACCGATTTACATTCCTCTCGATCTTCAGATCT-ATACACTTTTAAGATTGCCTGTGAAG 163 ||| ||| ||||||||||| ||||| || || | ||||||| ||||||||||||||||| Sbjct 35 CACGGATCTACATTCCTCTTGATCTCCAAAT-TAATACACTCTTAAGATTGCCTGTGAA- 92 Query 164 TCTTTA-TT-GAGATTCCGCACTTGAACATTACATCTTCCTCAGCTCCTCCACGTCTTCT 221 | || || | | | ||||||||||||||||||||||||||||||||||||||| || Sbjct 93 CCAATATTTCAAAAAACAGCACTTGAACATTACATCTTCCTCAGCTCCTCCACGTCTCCT 152 Query 222 CATTGCTTTTCAGGACTTTCACGGTAAAAAGCTTATGTTAGTCTCGTCGCCTAACCCATA 281 |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 153 CATTTCTTTTCAGGACTTTCACGGTAAAAATCTTATGTTAGTCTCGTCGCCTAACCCATA 212 Query 282 CGTATCTTCCTCTTCCTCTTCCTCTTCTTCATGTTGTGTACCTTATAAAGATCTGAACGT 341 |||| |||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 213 CGTA------TCTTCCTCTTCCTCTTCTTCATGTTGTGTACCCTATAAAGATCTGAACGT 266 Query 342 CTTTAAAATTAATGGGAAACTAGTGTATAATGCGGTTCGGGGCTTGATCTGCATAAGTAG 401 ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 267 CTTTAAAATAAATGGGAAACTAGTGTATAATGCGGTTCGGGGCTTGATCTGCTTAAGTAG 326 Query 402 ACTAAGTATGGGGATTTGTAACCCTAGCACAAGGCAGCTTCAGT-TTTTTCCCCAACTCA 460 | ||||| ||||||||||||||||||||||||||||||| || | ||||||||||||||| Sbjct 327 ATTAAGTGTGGGGATTTGTAACCCTAGCACAAGGCAGCTGCA-TATTTTTCCCCAACTCA 385 Query 461 AGTACAAAGAAGATCC-AAAACTTTTTACATGCCCCAATTATTTTGTTGGGTACGATTCT 519 |||||||||||||||| |||| || | | | ||||||||||||||||||||||||||||| Sbjct 386 AGTACAAAGAAGATCCAAAAAATTCTCA-ACGCCCCAATTATTTTGTTGGGTACGATTCT 444 Query 520 ATTGAAGATCAATACAAAGTGCTCGCAATTGATCGTTTTCATTTGAGAATGGAGCACAAG 579 ||||||||||||||||||||||| |||||||||||||| |||| |||||||||||| ||| Sbjct 445 ATTGAAGATCAATACAAAGTGCTAGCAATTGATCGTTTGCATTGGAGAATGGAGCATAAG 504 Query 580 ATTCTGTTATTGGGAAGAGAAGAAGCTTGGAGAGAGGCTCCATGTGTTGCATGTCCTCAT 639 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 505 ATTCTGTTATTGGGAAGAGAAGAAGCTTGGAGAGAGGCTCCATGTGTTGCATGTCCTCAT 564 Query 640 GTTTCTCATACCTCGGGGCTCTATATGAACGGTACCCTGTACTACGGGGCGTCTAGGACG 699 |||||||||||||||||| | ||||||||||| ||||||||||||||||||||| ||||| Sbjct 565 GTTTCTCATACCTCGGGGATGTATATGAACGGAACCCTGTACTACGGGGCGTCTCGGACG 624 Query 700 GATATCGATCCCTGGAATAACAATTCTGTAATTGTGAGTTTCGATGTTAGGCTTGAAACG 759 |||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||| Sbjct 625 GATATCGATCCCCCGAATAACAATTCTATAATTGTTAGTTTCGATGTTAGGCTTGAAACG 684 Query 760 TTCAAAATCATCAATGTACCAAGCAAAGTTCTACCAATGGGTTATGAAAATATGTGGCTT 819 ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 685 TTCAACATCATCAATGTACCAAGCAAAGTTCTACCAATGGGTTATGAGAATATGTGGCTT 744 Query 820 GCTGAGA-GGTGGAGGAATCTTACAGATAAAACTCTGATCAACTACAAAGGAAAAATCGG 878 ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 745 GCTGA-ACGGTGGAGGAATCTTACAGATAAAACTCTGATCAACTACAAAGGAAAAATTGG 803 Query 879 TGTGGTTGAGAATGCTCGTCAAGGTAGTTTTCGAATGTGGGTTGTGGAAGATGCTGAGAA 938 |||||| |||||||| ||| | |||||||||||||||||||||||||||||||||||||| Sbjct 804 TGTGGTCGAGAATGCACGTGAGGGTAGTTTTCGAATGTGGGTTGTGGAAGATGCTGAGAA 863 Query 939 AGAGGAATGGTCTATGAACACTTTTTATTTGCCCCAATCTGCTGCTGGCCTTGACTTCAA 998 |||||||||||| |||||||||||| ||||||| ||||||||| ||||||||||||||| Sbjct 864 AGAGGAATGGTCCATGAACACTTTTCATTTGCCTGAATCTGCTGTTGGCCTTGACTTCAA 923 Query 999 ---C-ATCATGGATACCTTTTATACCGGCGAGATTTGTCAGGTTCCGAAA-GAATT 1049 | |||||| || |||||||||| ||||||||||||| ||||| |||| ||||| Sbjct 924 GGTCGATCATGAATGCCTTTTATACAGGCGAGATTTGTCTGGTTC-GAAAAGAATT 978 > Ahg937413 jgi|Araly1|937413|scaffold_501604.1 Length=1018 Score = 399 bits (216), Expect = 2e-110 Identities = 534/680 (79%), Gaps = 52/680 (8%) Strand=Plus/Plus Query 395 TAAGTAGACTAAGTATGGGGATTTGTAACCCTAGCACAAGGCAGCTTCAGT-TTTTTCCC 453 |||||||| ||||| ||||||||||||||||||||||||||||||| || | ||| ||| Sbjct 238 TAAGTAGATTAAGTGTGGGGATTTGTAACCCTAGCACAAGGCAGCTGCA-TATTTATCCA 296 Query 454 CAACTCAAGTAC-AAAGAAGATCCA-AAACTTTTTACATGCCCCAAT-TA-TTTTGTTGG 509 ||| |||| | | ||| | |||||| || | | | || | || || |||| |||| Sbjct 297 CAAATCAAATTCGAAA-AGGATCCATGTAC-TGATCCCTGGATC-ATGTACTTTT-TTGG 352 Query 510 GTACGATTCTATTGAAGATCAATACAAAGTGCTCGCAATTGATCGTTTTCA-TTTGAGAA 568 ||| ||| || ||||||||||||||||||| || || ||| ||| ||| | | |||| Sbjct 353 GTATGATCCTGTTGAAGATCAATACAAAGTTCTAGCCATTCATC-ATTTGAGATGGAGAT 411 Query 569 TGGAGCACAAGATTCTGTTATTGGGAAGAGAAGAAGCTTGGAGAGAGGCTCCATGTGTTG 628 | ||||||||| || || || |||| || | || | ||||||||| ||||||| | Sbjct 412 TTGAGCACAAGGTTTTGGTAGTGGG-AG-G-AG--G-TTGGAGAGACGCTCCATATCCCA 465 Query 629 CATGTCCTCATGTT-TCTCATACCTCGGGGCTCTATATGAACGGTACCCTGTACTACGGG 687 | |||||||||||| | || |||| |||||| ||||||||||| ||||| ||||||||| Sbjct 466 CCTGTCCTCATGTTGT-TCGGACCTTGGGGCTGTATATGAACGGAACCCTATACTACGGG 524 Query 688 GCGTCTAGGACGGATATCGA-TCCCTGGAATAACAATTCTGTAATTGTGAGTTTCGATGT 746 || ||||||| ||| ||| | |||| |||||| |||||| ||||||||||||||||||| Sbjct 525 GCTTCTAGGATGGAAATCAAGTCCC-CGAATAATAATTCTATAATTGTGAGTTTCGATGT 583 Query 747 TAGGCTTGAAACGTTCAAAATCATCAATGTACCAAGCAAAGTTCTACCAATGGGTTATGA 806 |||| ||||||||||| || |||| | | ||| | | ||||| ||||||||| Sbjct 584 TAGGTTTGAAACGTTC--AA-CATC-A--T--CAA-C---G---TACCAGCGGGTTATGA 628 Query 807 AAATATGTGG-CTTGCTGAGAGGTGGAGGAATCTTACAGATAAAACTCTGATCAACTACA 865 || |||||| ||| | | | ||| | ||||||||| |||||||||| | Sbjct 629 GAAGATGTGGAATTG-T-TCA--T--CTGAA----GCGGATAAAACTTTGATCAACTATA 678 Query 866 AAGGAAAAATCGGTGTGGTTGAGAATGCTCGTCAAGGTAGTTTTCGAATGTGGGTTGTGG 925 ||| ||||| |||||||||||| | ||||| | ||||||||||||||||||||||||| Sbjct 679 GAGGGAAAATTGGTGTGGTTGAGCACCCTCGTGATGGTAGTTTTCGAATGTGGGTTGTGG 738 Query 926 AAGATGCTGAGAAAGAGGAAT-GGTCTATGAACACTTTTTATTTGCCCCAATCTGCTGCT 984 ||||||||||||||||| ||| |||| |||| ||||||| |||||||||||||||||||| Sbjct 739 AAGATGCTGAGAAAGAG-AATTGGTCCATGACCACTTTTCATTTGCCCCAATCTGCTGCT 797 Query 985 GGCCTTGACTTCAACATCATGGATACCTTTTATACCGGCGAGATTTGTC-AGGTTCCGAA 1043 || |||||||| | ||||||| ||| |||||| ||| |||||||||| | |||| || Sbjct 798 GGTCTTGACTTTGAGGTCATGGAAACCGTTTATAACGGTGAGATTTGTCTAC-TTCCAAA 856 Query 1044 AGAATTGTCAGATCCTTTTT 1063 ||||||| | ||||| |||| Sbjct 857 AGAATTGCCCGATCCGTTTT 876 Score = 86.1 bits (46), Expect = 5e-16 Identities = 50/52 (96%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 190 ATTACATCTTCCTCAGCTCCTCCACGTCTTCTCATTGCTTTTCAGGACTTTC 241 |||||||||||||||||| |||| |||||||||||||||||||||||||||| Sbjct 171 ATTACATCTTCCTCAGCTGCTCCTCGTCTTCTCATTGCTTTTCAGGACTTTC 222 > Ahg323341 jgi|Araly1|323341|fgenesh1_pm.C_scaffold_5000885 Length=1071 Score = 335 bits (181), Expect = 4e-91 Identities = 304/360 (84%), Gaps = 22/360 (6%) Strand=Plus/Plus Query 721 AATTCTGTAATTGTGAGTTTCGATGTTAGGCT-TGAAACGTTCAAAATCAT-CAATGTAC 778 |||||| ||||||||||||||||||||||| | |||||||| ||||||| | |||||||| Sbjct 574 AATTCTATAATTGTGAGTTTCGATGTTAGG-TCTGAAACGTACAAAATC-TCCAATGTAC 631 Query 779 CAAGCAAAGTTCTACCAAT-G--GGTTATGAAAATATGTGG-CTTGCTGAGAGGTG-GA- 832 |||||||| |||||| ||| | | || ||| ||| | ||| | |||| | | || | Sbjct 632 CAAGCAAACTTCTACAAATCGACGATTCTGATAATTTTTGGAC-TGCT-A-A-TTGCAAT 687 Query 833 -GGAATCTTACAGATAAAACTCTGATCAACTACAAAGGAAAAATCGGTGTGGTTGAGAAT 891 || | || |||||||||||||||||||||| || || || |||||||||||||| Sbjct 688 TGGTTTATTGGGGATAAAACTCTGATCAACTACAGCGGTAAGATTGGTGTGGTTGAGAAA 747 Query 892 GCTCGTCAAGGTAGT-TTTCGAATGTGGGTTGTGGAAGATGCTGAGAAAGAGGAATGGTC 950 |||| || |||| | ||||||||||||||||| |||||||||||||||||||||||||| Sbjct 748 CCTCGACATGGTA-TATTTCGAATGTGGGTTGTAGAAGATGCTGAGAAAGAGGAATGGTC 806 Query 951 TATGAACACTTTTTATTTGCCCCAATCTGCTGCTGGCCTTGACTTCAACA-TCATGGATA 1009 ||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||| Sbjct 807 TATGAACACTTTTTATTTGCCACAATCTGCTGCTGGCCTTGACTTCAA-AGTCATGGATA 865 Query 1010 CCTTTTATACCGGCGAGATTTGTCAGGTTCC-GAAAGAATTGTCAGATCCTTTTTCGTCT 1068 |||||||||||||||||||||||| |||| | |||| ||| || ||||| |||| |||| Sbjct 866 CCTTTTATACCGGCGAGATTTGTCTGGTTACAGAAAAAATA-TCTGATCCGTTTT-GTCT 923 > Ahg937412 jgi|Araly1|937412|scaffold_501603.1 Length=1377 Score = 126 bits (68), Expect = 3e-28 Identities = 120/144 (83%), Gaps = 7/144 (5%) Strand=Plus/Plus Query 929 ATGCTGAGAAAGAGGAATGGTCTATGAAC-ACTTTTTATTTGCCCCAATCTGCTGCTGGC 987 ||||||||||||| |||||||| ||| || |||||| ||||||||||||||||||||||| Sbjct 878 ATGCTGAGAAAGAAGAATGGTCCATG-ACTACTTTTCATTTGCCCCAATCTGCTGCTGGC 936 Query 988 CTTGACTTCAACATCAT-GGATACCTTTTATACCGGCGAGATTTGTCAGGTTCCGAAA-G 1045 ||||||| | |||| || || ||||||| ||||| ||| ||||||| | |||| ||| | Sbjct 937 CTTGACTACGACATTATCGG-TACCTTTAATACCTTCGACATTTGTCTGCTTCCAAAACG 995 Query 1046 AATTGTCAGATCCTTTTTCGTCTA 1069 | || | ||||| |||| ||||| Sbjct 996 ATTTTTT-GATCCGTTTT-GTCTA 1017 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40334046186 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5