BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G47130.1
Length=1083
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485089 jgi|Araly1|485089|fgenesh2_kg.5__1081__AT3G47130.1 1312 0.0
Ahg937413 jgi|Araly1|937413|scaffold_501604.1 399 2e-110
Ahg323341 jgi|Araly1|323341|fgenesh1_pm.C_scaffold_5000885 335 4e-91
Ahg937412 jgi|Araly1|937412|scaffold_501603.1 126 3e-28
> Ahg485089 jgi|Araly1|485089|fgenesh2_kg.5__1081__AT3G47130.1
Length=984
Score = 1312 bits (710), Expect = 0.0
Identities = 878/956 (92%), Gaps = 23/956 (2%)
Strand=Plus/Plus
Query 105 CACCGATTTACATTCCTCTCGATCTTCAGATCT-ATACACTTTTAAGATTGCCTGTGAAG 163
||| ||| ||||||||||| ||||| || || | ||||||| |||||||||||||||||
Sbjct 35 CACGGATCTACATTCCTCTTGATCTCCAAAT-TAATACACTCTTAAGATTGCCTGTGAA- 92
Query 164 TCTTTA-TT-GAGATTCCGCACTTGAACATTACATCTTCCTCAGCTCCTCCACGTCTTCT 221
| || || | | | ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 93 CCAATATTTCAAAAAACAGCACTTGAACATTACATCTTCCTCAGCTCCTCCACGTCTCCT 152
Query 222 CATTGCTTTTCAGGACTTTCACGGTAAAAAGCTTATGTTAGTCTCGTCGCCTAACCCATA 281
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 153 CATTTCTTTTCAGGACTTTCACGGTAAAAATCTTATGTTAGTCTCGTCGCCTAACCCATA 212
Query 282 CGTATCTTCCTCTTCCTCTTCCTCTTCTTCATGTTGTGTACCTTATAAAGATCTGAACGT 341
|||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 213 CGTA------TCTTCCTCTTCCTCTTCTTCATGTTGTGTACCCTATAAAGATCTGAACGT 266
Query 342 CTTTAAAATTAATGGGAAACTAGTGTATAATGCGGTTCGGGGCTTGATCTGCATAAGTAG 401
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 267 CTTTAAAATAAATGGGAAACTAGTGTATAATGCGGTTCGGGGCTTGATCTGCTTAAGTAG 326
Query 402 ACTAAGTATGGGGATTTGTAACCCTAGCACAAGGCAGCTTCAGT-TTTTTCCCCAACTCA 460
| ||||| ||||||||||||||||||||||||||||||| || | |||||||||||||||
Sbjct 327 ATTAAGTGTGGGGATTTGTAACCCTAGCACAAGGCAGCTGCA-TATTTTTCCCCAACTCA 385
Query 461 AGTACAAAGAAGATCC-AAAACTTTTTACATGCCCCAATTATTTTGTTGGGTACGATTCT 519
|||||||||||||||| |||| || | | | |||||||||||||||||||||||||||||
Sbjct 386 AGTACAAAGAAGATCCAAAAAATTCTCA-ACGCCCCAATTATTTTGTTGGGTACGATTCT 444
Query 520 ATTGAAGATCAATACAAAGTGCTCGCAATTGATCGTTTTCATTTGAGAATGGAGCACAAG 579
||||||||||||||||||||||| |||||||||||||| |||| |||||||||||| |||
Sbjct 445 ATTGAAGATCAATACAAAGTGCTAGCAATTGATCGTTTGCATTGGAGAATGGAGCATAAG 504
Query 580 ATTCTGTTATTGGGAAGAGAAGAAGCTTGGAGAGAGGCTCCATGTGTTGCATGTCCTCAT 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 505 ATTCTGTTATTGGGAAGAGAAGAAGCTTGGAGAGAGGCTCCATGTGTTGCATGTCCTCAT 564
Query 640 GTTTCTCATACCTCGGGGCTCTATATGAACGGTACCCTGTACTACGGGGCGTCTAGGACG 699
|||||||||||||||||| | ||||||||||| ||||||||||||||||||||| |||||
Sbjct 565 GTTTCTCATACCTCGGGGATGTATATGAACGGAACCCTGTACTACGGGGCGTCTCGGACG 624
Query 700 GATATCGATCCCTGGAATAACAATTCTGTAATTGTGAGTTTCGATGTTAGGCTTGAAACG 759
|||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 625 GATATCGATCCCCCGAATAACAATTCTATAATTGTTAGTTTCGATGTTAGGCTTGAAACG 684
Query 760 TTCAAAATCATCAATGTACCAAGCAAAGTTCTACCAATGGGTTATGAAAATATGTGGCTT 819
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 685 TTCAACATCATCAATGTACCAAGCAAAGTTCTACCAATGGGTTATGAGAATATGTGGCTT 744
Query 820 GCTGAGA-GGTGGAGGAATCTTACAGATAAAACTCTGATCAACTACAAAGGAAAAATCGG 878
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 745 GCTGA-ACGGTGGAGGAATCTTACAGATAAAACTCTGATCAACTACAAAGGAAAAATTGG 803
Query 879 TGTGGTTGAGAATGCTCGTCAAGGTAGTTTTCGAATGTGGGTTGTGGAAGATGCTGAGAA 938
|||||| |||||||| ||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 804 TGTGGTCGAGAATGCACGTGAGGGTAGTTTTCGAATGTGGGTTGTGGAAGATGCTGAGAA 863
Query 939 AGAGGAATGGTCTATGAACACTTTTTATTTGCCCCAATCTGCTGCTGGCCTTGACTTCAA 998
|||||||||||| |||||||||||| ||||||| ||||||||| |||||||||||||||
Sbjct 864 AGAGGAATGGTCCATGAACACTTTTCATTTGCCTGAATCTGCTGTTGGCCTTGACTTCAA 923
Query 999 ---C-ATCATGGATACCTTTTATACCGGCGAGATTTGTCAGGTTCCGAAA-GAATT 1049
| |||||| || |||||||||| ||||||||||||| ||||| |||| |||||
Sbjct 924 GGTCGATCATGAATGCCTTTTATACAGGCGAGATTTGTCTGGTTC-GAAAAGAATT 978
> Ahg937413 jgi|Araly1|937413|scaffold_501604.1
Length=1018
Score = 399 bits (216), Expect = 2e-110
Identities = 534/680 (79%), Gaps = 52/680 (8%)
Strand=Plus/Plus
Query 395 TAAGTAGACTAAGTATGGGGATTTGTAACCCTAGCACAAGGCAGCTTCAGT-TTTTTCCC 453
|||||||| ||||| ||||||||||||||||||||||||||||||| || | ||| |||
Sbjct 238 TAAGTAGATTAAGTGTGGGGATTTGTAACCCTAGCACAAGGCAGCTGCA-TATTTATCCA 296
Query 454 CAACTCAAGTAC-AAAGAAGATCCA-AAACTTTTTACATGCCCCAAT-TA-TTTTGTTGG 509
||| |||| | | ||| | |||||| || | | | || | || || |||| ||||
Sbjct 297 CAAATCAAATTCGAAA-AGGATCCATGTAC-TGATCCCTGGATC-ATGTACTTTT-TTGG 352
Query 510 GTACGATTCTATTGAAGATCAATACAAAGTGCTCGCAATTGATCGTTTTCA-TTTGAGAA 568
||| ||| || ||||||||||||||||||| || || ||| ||| ||| | | ||||
Sbjct 353 GTATGATCCTGTTGAAGATCAATACAAAGTTCTAGCCATTCATC-ATTTGAGATGGAGAT 411
Query 569 TGGAGCACAAGATTCTGTTATTGGGAAGAGAAGAAGCTTGGAGAGAGGCTCCATGTGTTG 628
| ||||||||| || || || |||| || | || | ||||||||| ||||||| |
Sbjct 412 TTGAGCACAAGGTTTTGGTAGTGGG-AG-G-AG--G-TTGGAGAGACGCTCCATATCCCA 465
Query 629 CATGTCCTCATGTT-TCTCATACCTCGGGGCTCTATATGAACGGTACCCTGTACTACGGG 687
| |||||||||||| | || |||| |||||| ||||||||||| ||||| |||||||||
Sbjct 466 CCTGTCCTCATGTTGT-TCGGACCTTGGGGCTGTATATGAACGGAACCCTATACTACGGG 524
Query 688 GCGTCTAGGACGGATATCGA-TCCCTGGAATAACAATTCTGTAATTGTGAGTTTCGATGT 746
|| ||||||| ||| ||| | |||| |||||| |||||| |||||||||||||||||||
Sbjct 525 GCTTCTAGGATGGAAATCAAGTCCC-CGAATAATAATTCTATAATTGTGAGTTTCGATGT 583
Query 747 TAGGCTTGAAACGTTCAAAATCATCAATGTACCAAGCAAAGTTCTACCAATGGGTTATGA 806
|||| ||||||||||| || |||| | | ||| | | ||||| |||||||||
Sbjct 584 TAGGTTTGAAACGTTC--AA-CATC-A--T--CAA-C---G---TACCAGCGGGTTATGA 628
Query 807 AAATATGTGG-CTTGCTGAGAGGTGGAGGAATCTTACAGATAAAACTCTGATCAACTACA 865
|| |||||| ||| | | | ||| | ||||||||| |||||||||| |
Sbjct 629 GAAGATGTGGAATTG-T-TCA--T--CTGAA----GCGGATAAAACTTTGATCAACTATA 678
Query 866 AAGGAAAAATCGGTGTGGTTGAGAATGCTCGTCAAGGTAGTTTTCGAATGTGGGTTGTGG 925
||| ||||| |||||||||||| | ||||| | |||||||||||||||||||||||||
Sbjct 679 GAGGGAAAATTGGTGTGGTTGAGCACCCTCGTGATGGTAGTTTTCGAATGTGGGTTGTGG 738
Query 926 AAGATGCTGAGAAAGAGGAAT-GGTCTATGAACACTTTTTATTTGCCCCAATCTGCTGCT 984
||||||||||||||||| ||| |||| |||| ||||||| ||||||||||||||||||||
Sbjct 739 AAGATGCTGAGAAAGAG-AATTGGTCCATGACCACTTTTCATTTGCCCCAATCTGCTGCT 797
Query 985 GGCCTTGACTTCAACATCATGGATACCTTTTATACCGGCGAGATTTGTC-AGGTTCCGAA 1043
|| |||||||| | ||||||| ||| |||||| ||| |||||||||| | |||| ||
Sbjct 798 GGTCTTGACTTTGAGGTCATGGAAACCGTTTATAACGGTGAGATTTGTCTAC-TTCCAAA 856
Query 1044 AGAATTGTCAGATCCTTTTT 1063
||||||| | ||||| ||||
Sbjct 857 AGAATTGCCCGATCCGTTTT 876
Score = 86.1 bits (46), Expect = 5e-16
Identities = 50/52 (96%), Gaps = 0/52 (0%)
Strand=Plus/Plus
Query 190 ATTACATCTTCCTCAGCTCCTCCACGTCTTCTCATTGCTTTTCAGGACTTTC 241
|||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 171 ATTACATCTTCCTCAGCTGCTCCTCGTCTTCTCATTGCTTTTCAGGACTTTC 222
> Ahg323341 jgi|Araly1|323341|fgenesh1_pm.C_scaffold_5000885
Length=1071
Score = 335 bits (181), Expect = 4e-91
Identities = 304/360 (84%), Gaps = 22/360 (6%)
Strand=Plus/Plus
Query 721 AATTCTGTAATTGTGAGTTTCGATGTTAGGCT-TGAAACGTTCAAAATCAT-CAATGTAC 778
|||||| ||||||||||||||||||||||| | |||||||| ||||||| | ||||||||
Sbjct 574 AATTCTATAATTGTGAGTTTCGATGTTAGG-TCTGAAACGTACAAAATC-TCCAATGTAC 631
Query 779 CAAGCAAAGTTCTACCAAT-G--GGTTATGAAAATATGTGG-CTTGCTGAGAGGTG-GA- 832
|||||||| |||||| ||| | | || ||| ||| | ||| | |||| | | || |
Sbjct 632 CAAGCAAACTTCTACAAATCGACGATTCTGATAATTTTTGGAC-TGCT-A-A-TTGCAAT 687
Query 833 -GGAATCTTACAGATAAAACTCTGATCAACTACAAAGGAAAAATCGGTGTGGTTGAGAAT 891
|| | || |||||||||||||||||||||| || || || ||||||||||||||
Sbjct 688 TGGTTTATTGGGGATAAAACTCTGATCAACTACAGCGGTAAGATTGGTGTGGTTGAGAAA 747
Query 892 GCTCGTCAAGGTAGT-TTTCGAATGTGGGTTGTGGAAGATGCTGAGAAAGAGGAATGGTC 950
|||| || |||| | ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 748 CCTCGACATGGTA-TATTTCGAATGTGGGTTGTAGAAGATGCTGAGAAAGAGGAATGGTC 806
Query 951 TATGAACACTTTTTATTTGCCCCAATCTGCTGCTGGCCTTGACTTCAACA-TCATGGATA 1009
||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||
Sbjct 807 TATGAACACTTTTTATTTGCCACAATCTGCTGCTGGCCTTGACTTCAA-AGTCATGGATA 865
Query 1010 CCTTTTATACCGGCGAGATTTGTCAGGTTCC-GAAAGAATTGTCAGATCCTTTTTCGTCT 1068
|||||||||||||||||||||||| |||| | |||| ||| || ||||| |||| ||||
Sbjct 866 CCTTTTATACCGGCGAGATTTGTCTGGTTACAGAAAAAATA-TCTGATCCGTTTT-GTCT 923
> Ahg937412 jgi|Araly1|937412|scaffold_501603.1
Length=1377
Score = 126 bits (68), Expect = 3e-28
Identities = 120/144 (83%), Gaps = 7/144 (5%)
Strand=Plus/Plus
Query 929 ATGCTGAGAAAGAGGAATGGTCTATGAAC-ACTTTTTATTTGCCCCAATCTGCTGCTGGC 987
||||||||||||| |||||||| ||| || |||||| |||||||||||||||||||||||
Sbjct 878 ATGCTGAGAAAGAAGAATGGTCCATG-ACTACTTTTCATTTGCCCCAATCTGCTGCTGGC 936
Query 988 CTTGACTTCAACATCAT-GGATACCTTTTATACCGGCGAGATTTGTCAGGTTCCGAAA-G 1045
||||||| | |||| || || ||||||| ||||| ||| ||||||| | |||| ||| |
Sbjct 937 CTTGACTACGACATTATCGG-TACCTTTAATACCTTCGACATTTGTCTGCTTCCAAAACG 995
Query 1046 AATTGTCAGATCCTTTTTCGTCTA 1069
| || | ||||| |||| |||||
Sbjct 996 ATTTTTT-GATCCGTTTT-GTCTA 1017
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40334046186
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5