BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G47150.1
Length=1083
Score E
Sequences producing significant alignments: (Bits) Value
Ahg323341 jgi|Araly1|323341|fgenesh1_pm.C_scaffold_5000885 1242 0.0
Ahg485089 jgi|Araly1|485089|fgenesh2_kg.5__1081__AT3G47130.1 320 1e-86
Ahg937413 jgi|Araly1|937413|scaffold_501604.1 226 3e-58
> Ahg323341 jgi|Araly1|323341|fgenesh1_pm.C_scaffold_5000885
Length=1071
Score = 1242 bits (672), Expect = 0.0
Identities = 973/1108 (88%), Gaps = 62/1108 (6%)
Strand=Plus/Plus
Query 1 ATGAAATTTGGTCCGAATACGACACAGATTTACATTCCTCTCGACCTCCAGATTAATATA 60
||||| ||||||||||||||||||| ||||||||||||||||||||||||||| || |||
Sbjct 1 ATGAAGTTTGGTCCGAATACGACACCGATTTACATTCCTCTCGACCTCCAGATCAACATA 60
Query 61 CTCTTAAGATTACCTGTCAAGTCTTTATTGAGATTTCGATGTGTCTCCAAGCTTTGGTGT 120
||||||||||| | ||| ||||||||||||||||||| |||||||||||||||||||| |
Sbjct 61 CTCTTAAGATTGCATGTGAAGTCTTTATTGAGATTTCAATGTGTCTCCAAGCTTTGGTAT 120
Query 121 TCTATTATCACCAGCCACGATTTTCGAAACCGTCACTTTAATATCACTTCTTCTTCAGCT 180
|||||||||||||||||||||||| |||||||||||||| |||| || ||||| ||||||
Sbjct 121 TCTATTATCACCAGCCACGATTTTGGAAACCGTCACTTTGATATTACATCTTCCTCAGCT 180
Query 181 CCTCCTCGTCTTCTCATTGCTTTTCAGGACTTTTACGGAGAAA--AGCTTC-TGCTAGTT 237
|||||||||||||||||||||||||||||||| || ||||| ||| || | ||||
Sbjct 181 GCTCCTCGTCTTCTCATTGCTTTTCAGGACTTTGAC--AGAAACGAGC-TCACGTTAGTC 237
Query 238 TCGTCGCCTAACCCAAACGTATCTTCCTCTTCCACTTCTTCATGTTGTGTACCCTATAAA 297
||||| |||||||||||| ||||||||||||| ||||||||||||||||||| || |||
Sbjct 238 TCGTCACCTAACCCAAACACATCTTCCTCTTCCCCTTCTTCATGTTGTGTACCTTACAAA 297
Query 298 GATCTGAGTAAAGTCGAA-ATAAATGGACGAAAGGTTTATAATGCGGTTTGGGGATTGAC 356
|||||||| | || || || |||||||||||||| ||||| || ||| |||||||||
Sbjct 298 GATCTGAGGCTACTC-AACATTAATGGACGAAAGGTGTATAACGCAGTTCGGGGATTGAT 356
Query 357 TTGCTTTGAAAGTAGATTAAAGGTTGGGATTTGTAACCCCAGCACGAGGGAGCTGCATAT 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 TTGCTTTGAAAGTAGATTAAAGGTTGGGATTTGTAACCCCAGCACGAGGGAGCTGCATAT 416
Query 417 GTTTCCCCAAATCAAATTCAAAA-ATTATCCAGACATTTTTCCATGCATCATGTACTTTC 475
||||||| | ||||| | |||| | ||||||||| |||||||||||||||||||||||
Sbjct 417 TTTTCCCCGAGTCAAACTGAAAAGAG-ATCCAGACACTTTTCCATGCATCATGTACTTTC 475
Query 476 TTGGGTACGATCGTATTGAAGATCAATACAAAGTGCTCGCCATTGATAATTTACCTTGGA 535
|||||||||||| ||||| |||| |||| |||||||| |||||||||||||| |||||||
Sbjct 476 TTGGGTACGATCCTATTGGAGATAAATATAAAGTGCTGGCCATTGATAATTTGCCTTGGA 535
Query 536 GATTGGAGTACAAAGTTGTGCCTATACTACGGGCCTCGAGGAAGGACAAGGGTTCTCCAA 595
||||||||||||| | || | | | | | | ||||||||| || |
Sbjct 536 GATTGGAGTACAA-G--------AT--T--G----T-G-G-A----CAAGGGTTCCCCCA 571
Query 596 ATATAT-CTATAATTGTGAGTTTTGATGTTAGGTCTGAAACGTACAAAAACTCCAATGTA 654
||| || |||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 572 ATA-ATTCTATAATTGTGAGTTTCGATGTTAGGTCTGAAACGTACAAAATCTCCAATGTA 630
Query 655 CCAAGCAAACTTCTACCAATGGAC-ACTTCTGATAATTTTTGGACTGCTAATTGCAATTG 713
|||||||||||||||| ||| ||| | |||||||||||||||||||||||||||||||||
Sbjct 631 CCAAGCAAACTTCTACAAATCGACGA-TTCTGATAATTTTTGGACTGCTAATTGCAATTG 689
Query 714 TTTTATTGGGGATAAAACTCTGATCAACTACAACGGTAAAATTGGTGTGGTTGAGAAACC 773
||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 690 GTTTATTGGGGATAAAACTCTGATCAACTACAGCGGTAAGATTGGTGTGGTTGAGAAACC 749
Query 774 TCAACATGGTAGATTTCGAATGTGGGTTGTTGAAGATGCTGAGAAAGAGGAATGGTCTAT 833
|| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 750 TCGACATGGTATATTTCGAATGTGGGTTGTAGAAGATGCTGAGAAAGAGGAATGGTCTAT 809
Query 834 GAACACTTTTTATTTGCCCCAATCTGCTTCTGGCCTTGACTTCAAGGTCATGAATACCTT 893
|||||||||||||||||| ||||||||| |||||||||||||||| |||||| |||||||
Sbjct 810 GAACACTTTTTATTTGCCACAATCTGCTGCTGGCCTTGACTTCAAAGTCATGGATACCTT 869
Query 894 TTATACCGGCGAGATCTGTCTAGTTACAGAAAAAATATCTGATCCGTTTTGTCTCTTCTA 953
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 870 TTATACCGGCGAGATTTGTCTGGTTACAGAAAAAATATCTGATCCGTTTTGTCTCTTCTA 929
Query 954 TTACAATTTGAAGACAAATAGCATGAGAAGTGTCACGTATGAA-GGACTACTACATATGG 1012
||||||||||||||| |||||||||||||||||| | || || ||||||| | |||
Sbjct 930 TTACAATTTGAAGACGAATAGCATGAGAAGTGTCGCA-ATTAAAGGACTAC--C-TATTT 985
Query 1013 CC-ACGTTTAAGCAA-GCGTTGCAATTC-A--G--T----GT-A-T----CATATCATTA 1055
|| | |||||||||| | |||||||||| | | | || | | || |||||||
Sbjct 986 CCGA-GTTTAAGCAAAG-GTTGCAATTCCACAGCCTTTCTGTGACTGTTTCAGATCATTA 1043
Query 1056 TGAGAGCTTGGTGTCCTTAGAAACTTGA 1083
||||||||||||||||||||||||||||
Sbjct 1044 TGAGAGCTTGGTGTCCTTAGAAACTTGA 1071
> Ahg485089 jgi|Araly1|485089|fgenesh2_kg.5__1081__AT3G47130.1
Length=984
Score = 320 bits (173), Expect = 1e-86
Identities = 334/408 (82%), Gaps = 26/408 (6%)
Strand=Plus/Plus
Query 147 AAACCGTCACTTTAATATCACTTCTTCTTCAGCTCCTCCTCGTCTTCTCATTGCTTTTCA 206
|||| | ||||| || || || ||||| ||||||||||| ||||| |||||| |||||||
Sbjct 106 AAACAG-CACTTGAACATTACATCTTCCTCAGCTCCTCCACGTCTCCTCATTTCTTTTCA 164
Query 207 GGACTTTTACGG-AGAAAAGCTTCTGCTAGTTTCGTCGCCTAACCCAAACGTATCTTCCT 265
||||||| |||| | |||| ||| || |||| ||||||||||||||| ||||||||||||
Sbjct 165 GGACTTTCACGGTA-AAAATCTTATGTTAGTCTCGTCGCCTAACCCATACGTATCTTCCT 223
Query 266 CTTCCACTTCTTCATGTTGTGTACCCTATAAAGATCTGAGTAAAGTCG--AAA-TAAATG 322
||||| ||||||||||||||||||||||||||||||||| | ||| ||| ||||||
Sbjct 224 CTTCCTCTTCTTCATGTTGTGTACCCTATAAAGATCTGA--AC-GTCTTTAAAATAAATG 280
Query 323 GACGAAAG--GTTTATAATGCGGTTTGGGGATTGA-CTTGCTTTGAAAGTAGATTAAAG- 378
| |||| || |||||||||||| |||| |||| || |||| || ||||||||| |
Sbjct 281 G--GAAACTAGTGTATAATGCGGTTCGGGGCTTGATCT-GCTT--AA-GTAGATTAA-GT 333
Query 379 GTTGGGATTTGTAACCCCAGCACGAGGGAGCTGCATATGTTTCCCCAAATCAAATTCAAA 438
|| |||||||||||||| ||||| ||| |||||||||| ||||||||| |||| | ||||
Sbjct 334 GTGGGGATTTGTAACCCTAGCACAAGGCAGCTGCATATTTTTCCCCAACTCAAGTACAAA 393
Query 439 -AATTATCCAGACATTTTTCCATGCATCA-TGTACTTTCTTGGGTACGAT-CGTATTGAA 495
|| ||||| | | || || | || || | || ||| ||||||||||| | |||||||
Sbjct 394 GAAG-ATCCAAAAAATTCTCAACGCCCCAAT-TATTTTGTTGGGTACGATTC-TATTGAA 450
Query 496 GATCAATACAAAGTGCTCGCCATTGATAATTTACCTTGGAGATTGGAG 543
||||||||||||||||| || |||||| ||| | ||||||| |||||
Sbjct 451 GATCAATACAAAGTGCTAGCAATTGATCGTTTGCATTGGAGAATGGAG 498
> Ahg937413 jgi|Araly1|937413|scaffold_501604.1
Length=1018
Score = 226 bits (122), Expect = 3e-58
Identities = 168/190 (88%), Gaps = 3/190 (2%)
Strand=Plus/Plus
Query 27 GATTTACATTCCTCTCGACCTCCAGATTAATATACTCTTAAGATTACCTGTCAAGTCTTT 86
|||| |||||||||| || ||||||||||||| |||||||||||||||||| ||| ||||
Sbjct 32 GATTGACATTCCTCTTGATCTCCAGATTAATACACTCTTAAGATTACCTGTAAAGCCTTT 91
Query 87 ATTGAGATTTCGATGTGTCTCCAAGCTTTGGTGTTCTATTATCACCAGCCACGATTTTCG 146
||||||||||||||| |||||||||||||||| || || ||||| ||||| ||||||
Sbjct 92 ATTGAGATTTCGATGCGTCTCCAAGCTTTGGTCCTCAATCATCACTAGCCAATATTTTCA 151
Query 147 AAACCGTCACTTTA--A-TATCACTTCTTCTTCAGCTCCTCCTCGTCTTCTCATTGCTTT 203
|||||||||||||| | ||| || ||||| |||||| ||||||||||||||||||||||
Sbjct 152 AAACCGTCACTTTATTATTATTACATCTTCCTCAGCTGCTCCTCGTCTTCTCATTGCTTT 211
Query 204 TCAGGACTTT 213
||||||||||
Sbjct 212 TCAGGACTTT 221
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40334046186
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5