BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G47160.2
Length=1260
Score E
Sequences producing significant alignments: (Bits) Value
Ahg485090 jgi|Araly1|485090|fgenesh2_kg.5__1082__AT3G47160.1 1070 0.0
> Ahg485090 jgi|Araly1|485090|fgenesh2_kg.5__1082__AT3G47160.1
Length=1095
Score = 1070 bits (579), Expect = 0.0
Identities = 638/666 (96%), Gaps = 5/666 (1%)
Strand=Plus/Plus
Query 597 GGTATCACAGACCTGGATGATCGTAAACAGAAAGAAGTCTGCAAAATACGGTACAGAAAT 656
|||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||
Sbjct 433 GGTATCACAGACCTGGATGACCGCAAACAGAAAGAGGTCTGCAAAATACGGTACAGAAAT 492
Query 657 -AAAGATGAGACTGAAAAGGTCAAGCTCTCGGAGATTGACATCGAGAGAGAAGAAGAATG 715
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 493 AAAAGATGAGACTGAAAAGGTCAAGCTCTCGGAGATTGACATCGAGAGAGAAGAAGAATG 552
Query 716 CGGGATTTGTATGGAGATGAACAACATGGTGGTTCTCCCTAATTGTACGCATTCTTTATG 775
|||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||
Sbjct 553 CGGGATTTGTATGGAGATGAACAACATGGTTGTTCTCCCCAATTGTACCCATTCTTTATG 612
Query 776 CATCAAGTGTTACCGCGATTGGCACGGGAGGTCAGAATCATGCCCTTTTTGCCGAGACAG 835
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 613 CATCAAGTGTTACCGCGATTGGCATGGGAGGTCAGAATCATGCCCTTTTTGCCGAGACAG 672
Query 836 TCTTAAGAGAGTAAACTCAGGGGACTTATGGATGTTAATGGAGAAATCCGATACGGTTAA 895
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||
Sbjct 673 TCTTAAGAGAGTAAACTCAGGGGACTTGTGGATGTTAATGGAGAAATCGGATACGGTCAA 732
Query 896 TATGTATACAATTGAGCGGGAGAATAAGAAGAGGTTGTTTGTGTATATAGAGAAGCTACC 955
|||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||
Sbjct 733 TATGTATACAATTGAGCGGGAGAATAAGAAGAGGCTGTTTGTGTACATAGAGAAACTACC 792
Query 956 TCTAGTGGTTCCAGATCAAGTGTTTGCTTCTTCTCCTTATGATTGCCATGTCAAGTAAAT 1015
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 793 TCTAGTGGTTCCAGATCAAGTGTTTGCGTCTTCTCCTTACGATTGCCATGTCAAGTAAAT 852
Query 1016 AAGACGGAGAAGAGCTTTGGCAAAAGCCGAAACCGGGTCTGGTAAACTTTTATCTGAATG 1075
|||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 853 AAGAAGAAGAAGAGCTTTGGCAAAAGCCGAAACCGGGTCCGGTAAACTTTTATCTGAAT- 911
Query 1076 TATATGTATATAATGTTTTAGAGTAGTAGTAAGTAATATAGTGTAA-CTATTTCTTGGGG 1134
||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||
Sbjct 912 -ATATGTATATAATGTTTTAGAGTAGTAGTAAGTAATATAGTGTAAAC-ATTTCTGGGGG 969
Query 1135 AAGTCCATTTCTACTTGCTTTTCTTTTTATCTGCATTTGGCTTTTGGTTCCCAAAAACTC 1194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 970 AAGTCCATTTCTACTTGCTTTTCTTTTTATCTGCATTTGGCTTTTGGTTCCCAAAAACTC 1029
Query 1195 TTATTTCTGTTGTACATTCATGTCTGAATTTAATAACCTCTTCTTCAAGAAATGGCTTTC 1254
|||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1030 TTATTTCTATTGTACATTCATGTCTGAATTTAAAAACCTCTTCTTCAAGAAGTGGCTTTT 1089
Query 1255 ACTCAC 1260
||||||
Sbjct 1090 ACTCAC 1095
Score = 353 bits (191), Expect = 1e-96
Identities = 209/218 (96%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 344 AGCTTTAGATTATCCTCGGGAGAAGGATGGAGCGCGTGTTCAAATGAGGCTATCGTACAC 403
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 214 AGCTTTAGATTATCCTCGGGAGAAGGATGGAGCGCGTGTTCAAATGAGGCTATCTTACAA 273
Query 404 TCCAGCTGCTCAGTTTTTACTTTTTCTTGTACAATGGACTGATTGCCATCTTGCTGGTAC 463
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 274 TCCGGCTGCTCAGTTTTTACTTTTTCTTGTACAATGGACTGATTGCCATCTTGCCGGTAC 333
Query 464 ACTCGGTCTGCTCAGAGTTCTGATTTACATGACCTATGCGGATGGGAAAACCACAATGTC 523
|||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 334 CCTCGGTTTGCTCAGAGTTCTTATTTACATGACATATGCGGATGGGAAAACCACAATGTC 393
Query 524 GGTTTATGAGAGAAAAACAAGTATTAAAGATTTCTATG 561
|||||||||||||||||| |||||||||||||||||||
Sbjct 394 GGTTTATGAGAGAAAAACCAGTATTAAAGATTTCTATG 431
Score = 289 bits (156), Expect = 4e-77
Identities = 210/232 (91%), Gaps = 20/232 (9%)
Strand=Plus/Plus
Query 77 TCTGATCATCGAATTTGGGTGAAGAAATATCTTTTCTATCTAATTGCTAAAAGGAAAAGC 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTGATCATCGAATTTGGGTGAAGAAATATCTTTTCTATCTAATTGCTAAAAGGAAAAGC 60
Query 137 ATCAAActttgttttc-tttgcttcttctatcttcttcttctttcttcttctCGCTTTAA 195
|||||||||||||||| ||||||||||||| ||||| | | | || |
Sbjct 61 ATCAAACTTTGTTTTCATTTGCTTCTTCTA-------------TCTTC-T-T--C-TT-A 101
Query 196 TACTCTTTGATTCCTCTGTTCGTTTGATGAGAATTAGATTTTAAATGGCAAAAGTTTCGT 255
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 102 TACTTTTTGATTCCTCTGTTCGTTTGATGAGAATTTGATTTTAAATGGCAAAAGTTTCGT 161
Query 256 TTAAGGATTCTCTGAAAGCTCTTGAAGCTGATATTCAACACGCTAACACTGT 307
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 162 TTAAGGATTCTCTGAAAGCTCTTGAAGCTGATATTCAACACGCTAACACTGT 213
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47081802495
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5